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TRIM51 Gene

protein-coding   GIFtS: 37
GCID: GC11P055651

Tripartite Motif-Containing 51

(Previous name: SPRY domain containing 5)
(Previous symbol: SPRYD5)
  Search for TRIM51
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Tripartite Motif-Containing 511 2
SPRYD51 2 3
SPRY Domain Containing 51 2
SPRY Domain-Containing Protein 52 3
TRIM51A2
Tripartite Motif-Containing Protein 512

External Ids:    HGNC: 190231   Entrez Gene: 847672   Ensembl: ENSG000001249007   UniProtKB: Q9BSJ13   

Export aliases for TRIM51 gene to outside databases

Previous GC identifers: GC11P057166 GC11P055904 GC11P055428 GC11P055410


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for TRIM51 Gene:
TRIM51 (tripartite motif-containing 51) is a protein-coding gene. An important paralog of this gene is TRIM43.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence:
NC_000011.10  NC_018922.2  NT_167190.2  
Regulatory elements:
   Search for regulatory transcription factor binding sites for TRIM51
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidTRIM51 promoter sequence
   Search Chromatin IP Primers for TRIM51

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat TRIM51


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 11q11   Ensembl cytogenetic band:  11q11   HGNC cytogenetic band: 11p11

TRIM51 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
TRIM51 gene location

GeneLoc information about chromosome 11         GeneLoc Exon Structure

GeneLoc location for GC11P055651:  view genomic region     (about GC identifiers)

Start:
55,650,773 bp from pter      End:
55,659,286 bp from pter
Size:
8,514 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB/Swiss-Prot: TRI51_HUMAN, Q9BSJ1 (See protein sequence)
Recommended Name: Tripartite motif-containing protein 51  
Size: 452 amino acids; 52285 Da
Sequence caution: Sequence=AAH05014.1; Type=Erroneous initiation; Note=Translation N-terminally extended;
Secondary accessions: A6NMG2
Alternative splicing: 2 isoforms:  Q9BSJ1-1   Q9BSJ1-2   

Explore the universe of human proteins at neXtProt for TRIM51: NX_Q9BSJ1

Explore proteomics data for TRIM51 at MOPED


See TRIM51 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

REFSEQ proteins: NP_116070.2  
ENSEMBL proteins: 
 ENSP00000395086   ENSP00000244891  

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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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HGNC Gene Families:
TRIM: Tripartite motif containing / Tripartite motif containing
RNF: RING-type (C3HC4) zinc fingers

Selected InterPro protein domains (see all 8):
 IPR017907 Znf_RING_CS
 IPR001841 Znf_RING
 IPR001870 B30.2/SPRY
 IPR003877 SPRY_rcpt
 IPR000315 Znf_B-box

Graphical View of Domain Structure for InterPro Entry Q9BSJ1

ProtoNet protein and cluster: Q9BSJ1

1 Blocks protein domain: IPB003879 Butyrophylin C-terminal DUF signature

UniProtKB/Swiss-Prot: TRI51_HUMAN, Q9BSJ1
Similarity: Belongs to the TRIM/RBCC family
Similarity: Contains 1 B box-type zinc finger
Similarity: Contains 1 B30.2/SPRY domain
Similarity: Contains 1 RING-type zinc finger


TRIM51 for domains           About GeneDecksing


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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     Gene Ontology (GO): 3 molecular function terms:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005515protein binding ----
GO:0008270zinc ion binding IEA--
GO:0046872metal ion binding ----
     
TRIM51 for ontologies           About GeneDecksing


Phenotypes:
     1 GenomeRNAi human phenotype for TRIM51:
 Increased HPV18 LCR reporter a 

Animal Models:
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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Gene Ontology (GO): 1 cellular component term:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005622intracellular IEA--

TRIM51 for ontologies           About GeneDecksing


(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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    Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for TRIM51
Interactions:

    Search GeneGlobe Interaction Network for TRIM51

Selected Interacting proteins for TRIM51 (Q9BSJ12, 3) via UniProtKB, MINT, STRING, and/or I2D (see all 6)
InteractantInteraction Details
GeneCardExternal ID(s)
MAGEA11P433642, 3MINT-67278 I2D: score=5 
RNF40O751502, 3MINT-66497 I2D: score=5 
SPRY2O435973I2D: score=4 
MEAF6Q9HAF13I2D: score=1 
--Q7Z7833, 2MINT-66269 I2D: score=1 
About this table

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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Browse Small Molecules at EMD Millipore
   Browse drugs & compounds from Enzo Life Sciences
  Browse compounds at ApexBio 

Browse Tocris compounds for TRIM51 (TRI51)



(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, and/or QIAGEN )
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REFSEQ mRNAs for TRIM51 gene: 
NM_032681.3  

Unigene Cluster for TRIM51:

Tripartite motif-containing 51
Hs.326734  [show with all ESTs]
Unigene Representative Sequence: NM_032681
2 Ensembl transcripts including schematic representations, and UCSC links where relevant:
ENST00000449290(uc010rip.2) ENST00000244891(uc010riq.2)
miRNA
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  QuantiFast Probe-based Assays in human, mouse, rat TRIM51

Additional mRNA sequence: 

BC005014.1 JF968454.1 

2 DOTS entries:

DT.91663774  DT.120721154 

5 AceView cDNA sequences:

BX281820 BC005014 NM_032681 BE409094 BE892280 

GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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TRIM51 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: --
TRIM51 Expression
About this image

TRIM51 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

TRIM51 Protein Expression

SOURCE GeneReport for Unigene cluster: Hs.326734
    Custom PCR Arrays for TRIM51
Primer
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In Situ
Assay Products:
 

 
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TRIM51

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of chordates.

Orthologs for TRIM51 gene from Selected species (see all 5)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
oppossum
(Monodelphis domestica)
Mammalia --
--
(see all 14)
Uncharacterized protein
(see all 14)
33(a)
30(a)
(see all 14)
many ↔ many
many ↔ many
(see all 14)
1(154122154-154123065)
4(353528928-353537955)
lizard
(Anolis carolinensis)
Reptilia --
--
(see all 7)
Uncharacterized protein
(see all 7)
31(a)
30(a)
(see all 7)
many ↔ many
many ↔ many
(see all 7)
2(193472385-193473600)
GL344228.1(12866-17397)
zebrafish
(Danio rerio)
Actinopterygii trim1096
tripartite motif containing 109
20(a)
many ↔ many
16(15829385-15839582) ENSDARG00000062429


ENSEMBL Gene Tree for TRIM51 (if available)
TreeFam Gene Tree for TRIM51 (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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Paralogs for TRIM51 gene
TRIM432  TRIM772  TRIM612  TRIM492  TRIM64B2  TRIM49B2  TRIM64C2  TRIM49C2  
TRIM49D12  TRIM482  
Selected SIMAP similar genes for TRIM51 using alignment to 1 protein entry:     TRI51_HUMAN(see all similar genes):
TRIM49B    TRIM49D1    TRIM49D2P    TRIM48    TRIM49C    TRIM49
TRIM43    TRIM43B    TRIM41    TRIM64    TRIM64B    TRIM64C
TRIM77    MEFV    TRIM61    TRIM39    TRIML1    TRIM21

TRIM51 for paralogs           About GeneDecksing


Selected Pseudogenes.org Pseudogenes for TRIM51 (see all 16)
PGOHUM00000257809 PGOHUM00000257816 PGOHUM00000257821 PGOHUM00000242406 PGOHUM00000258574


(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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Selected SNPs for TRIM51 (see all 273)    About this table    
Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 11 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs1822298901,2
C--55648803(+) ATCAAA/GCAGGA 1 -- us2k10--------
rs1869650681,2
--55648875(+) GTTACA/TATTAA 1 -- us2k10--------
rs1901624161,2
--55648909(+) TATGTA/TTTGGT 1 -- us2k10--------
rs1816347201,2
--55648940(+) ATCATC/TATTCA 1 -- us2k10--------
rs1855848451,2
--55648941(+) TCATCA/GTTCAT 1 -- us2k10--------
rs124175341,2
C,F,H--55648948(+) TCATGA/GTCATG 1 -- us2k1 tfbs37Minor allele frequency- G:0.09NS EA NA 644
rs1903004531,2
--55648958(+) GGCATA/GAAATA 1 -- us2k10--------
rs2014959481,2
--55648970(+) TTCTG-/TTTTTT 1 -- us2k10--------
rs49395371,2
C,F,A,H--55648971(+) TTCTGG/TTTTTT 1 -- us2k1 trp35Minor allele frequency- T:0.46NA WA 128
rs1822041741,2
--55649014(+) AATAGA/TTGACA 1 -- us2k10--------

HapMap Linkage Disequilibrium report for TRIM51 (55650773 - 55659286 bp)

Structural Variations
      Database of Genomic Variants (DGV) variations for TRIM51: --
Site Specific Mutation Identification with PCR Assays
Search QIAGEN SeqTarget long-range PCR primers for resequencing TRIM51
DNA2.0 Custom Variant and Variant Library Synthesis for TRIM51

(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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  --

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for TRIM51 gene integrated from 10 sources:
(articles sorted by number of sources associating them with TRIM51)
    Utopia: connect your pdf to the dynamic
world of online information

  1. Mass spectrometric analysis of lysine ubiquitylation reveals promiscuity at site level. (PubMed id 21139048)1 Danielsen J.M....Nielsen M.L. (amp 2011)
  2. Identification of a genomic reservoir for new TRIM genes in primate genomes. (PubMed id 22144910)1 Han K.... Sawyer S.L. (PLoS Genet. 2011)
  3. Human chromosome 11 DNA sequence and analysis including novel gene identification. (PubMed id 16554811)2 Taylor T.D....Sakaki Y. (Nature 2006)
  4. Towards a proteome-scale map of the human protein-protein interaction network. (PubMed id 16189514)1 Rual J.F....Vidal M. (Nature 2005)
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S.... Malek J. (Genome Res. 2004)
  6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 84767 HGNC: 19023 AceView: TRIM51 Ensembl:ENSG00000124900 euGenes: HUgn84767
ECgene: TRIM51 H-InvDB: TRIM51

(According to HUGE)
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  --

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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NameDescription
PharmGKB entry for TRIM51 Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for TRIM51 gene:
Search GeneIP for patents involving TRIM51

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, and ESI BIO, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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 Browse Proteins at Cloud-Clone Corp.
 Browse Antibodies at Cloud-Clone Corp.
 Browse ELISAs at Cloud-Clone Corp.
 Browse CLIAs at Cloud-Clone Corp.



 Browse ESI BIO Cell Lines and PureStem Progenitors for TRIM51
 Gene Synthesis
 Protein Engineering
 Variant Library Synthesis
 Codon Optimization
 Protein Production and Purification
 Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TRIM51
 SwitchGear 3'UTR luciferase reporter plasmids for TRIM51
 SwitchGear Promoter luciferase reporter plasmids for TRIM51
 ThermoFisher Antibodies for TRIM51
 Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat TRIM51
 inGenious Targeting Laboratory: Let us create your new Knockout/Knockin mouse model for TRIM51
 inGenious Targeting Laboratory: Contact us about creating complex and humanized mouse models for TRIM51
 LSBio Antibodies in human, mouse, rat for TRIM51
Customized transgenic rodents for:
 Humanization
 Biomarker expression
 Off-target effect monitoring
 Translational medicine
 Tissue-specific gene expresssion
 Time-controlled gene expresssion
 Browse compounds at ApexBio
       
GeneCards Homepage - Last full update: 7 May 2014 - Incrementals: 9 May 2014 , 2 Jun 2014 , 26 Jun 2014 , 30 Jun 2014

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