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Aliases for TRIM51 Gene

Aliases for TRIM51 Gene

  • Tripartite Motif-Containing 51 2 3
  • SPRY Domain-Containing Protein 5 3 4
  • SPRY Domain Containing 5 2 3
  • SPRYD5 3 4
  • Tripartite Motif-Containing Protein 51 3
  • TRIM51A 3

External Ids for TRIM51 Gene

Previous HGNC Symbols for TRIM51 Gene

  • SPRYD5

Previous GeneCards Identifiers for TRIM51 Gene

  • GC11P057166
  • GC11P055428
  • GC11P055410
  • GC11P055651

Summaries for TRIM51 Gene

GeneCards Summary for TRIM51 Gene

TRIM51 (Tripartite Motif-Containing 51) is a Protein Coding gene. An important paralog of this gene is TRIM77.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRIM51 Gene

Genomics for TRIM51 Gene

Genomic Location for TRIM51 Gene

Start:
55,883,297 bp from pter
End:
55,891,810 bp from pter
Size:
8,514 bases
Orientation:
Plus strand

Genomic View for TRIM51 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TRIM51 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRIM51 Gene

No data available for Regulatory Elements for TRIM51 Gene

Proteins for TRIM51 Gene

  • Protein details for TRIM51 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BSJ1-TRI51_HUMAN
    Recommended name:
    Tripartite motif-containing protein 51
    Protein Accession:
    Q9BSJ1
    Secondary Accessions:
    • A6NMG2

    Protein attributes for TRIM51 Gene

    Size:
    452 amino acids
    Molecular mass:
    52285 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH05014.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305};

    Alternative splice isoforms for TRIM51 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for TRIM51 Gene

Proteomics data for TRIM51 Gene at MOPED

Post-translational modifications for TRIM51 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for TRIM51 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for TRIM51 Gene

Domains for TRIM51 Gene

Gene Families for TRIM51 Gene

HGNC:
  • RNF :RING-type (C3HC4) zinc fingers
  • TRIM :Tripartite motif containing / Tripartite motif containing

Graphical View of Domain Structure for InterPro Entry

Q9BSJ1

UniProtKB/Swiss-Prot:

TRI51_HUMAN :
  • Q9BSJ1
Domain:
  • Contains 1 B30.2/SPRY domain.
Family:
  • Belongs to the TRIM/RBCC family.
Similarity:
  • Contains 1 B box-type zinc finger.
  • Contains 1 RING-type zinc finger.
genes like me logo Genes that share domains with TRIM51: view

No data available for Suggested Antigen Peptide Sequences for TRIM51 Gene

Function for TRIM51 Gene

Gene Ontology (GO) - Molecular Function for TRIM51 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding --
GO:0008270 zinc ion binding IEA --
GO:0046872 metal ion binding --
genes like me logo Genes that share ontologies with TRIM51: view

Phenotypes for TRIM51 Gene

GenomeRNAi human phenotypes for TRIM51:
genes like me logo Genes that share phenotypes with TRIM51: view

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for TRIM51

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for TRIM51 Gene

Localization for TRIM51 Gene

Gene Ontology (GO) - Cellular Components for TRIM51 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular IEA --
genes like me logo Genes that share ontologies with TRIM51: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from COMPARTMENTS for TRIM51 Gene

Pathways for TRIM51 Gene

SuperPathways for TRIM51 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TRIM51 Gene

None

No data available for Pathways by source for TRIM51 Gene

Transcripts for TRIM51 Gene

mRNA/cDNA for TRIM51 Gene

(2) Additional mRNA sequences :
(5) Selected AceView cDNA sequences:
(1) REFSEQ mRNAs :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TRIM51 Gene

Tripartite motif-containing 51:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for TRIM51

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRIM51 Gene

No ASD Table

Relevant External Links for TRIM51 Gene

GeneLoc Exon Structure for
TRIM51
ECgene alternative splicing isoforms for
TRIM51

Expression for TRIM51 Gene

mRNA expression in normal human tissues for TRIM51 Gene

mRNA differential expression in normal tissues according to GTEx for TRIM51 Gene

This gene is overexpressed in Testis (29.1), Brain - Anterior cingulate cortex (BA24) (5.3), Brain - Frontal Cortex (BA9) (5.2), and Brain - Cortex (5.1).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for TRIM51 Gene

SOURCE GeneReport for Unigene cluster for TRIM51 Gene Hs.326734

genes like me logo Genes that share expressions with TRIM51: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for TRIM51 Gene

Orthologs for TRIM51 Gene

This gene was present in the common ancestor of chordates.

Orthologs for TRIM51 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TRIM51 36
  • 93 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia -- 36
  • 33 (a)
ManyToMany
-- 36
  • 28 (a)
ManyToMany
-- 36
  • 28 (a)
ManyToMany
-- 36
  • 29 (a)
ManyToMany
-- 36
  • 19 (a)
ManyToMany
-- 36
  • 28 (a)
ManyToMany
-- 36
  • 29 (a)
ManyToMany
-- 36
  • 29 (a)
ManyToMany
-- 36
  • 30 (a)
ManyToMany
-- 36
  • 26 (a)
ManyToMany
-- 36
  • 25 (a)
ManyToMany
-- 36
  • 29 (a)
ManyToMany
-- 36
  • 28 (a)
ManyToMany
-- 36
  • 28 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 16 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 26 (a)
ManyToMany
-- 36
  • 31 (a)
ManyToMany
-- 36
  • 20 (a)
ManyToMany
-- 36
  • 21 (a)
ManyToMany
-- 36
  • 23 (a)
ManyToMany
-- 36
  • 24 (a)
ManyToMany
-- 36
  • 30 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii trim109 36
  • 20 (a)
ManyToMany
Species with no ortholog for TRIM51:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for TRIM51 Gene

ENSEMBL:
Gene Tree for TRIM51 (if available)
TreeFam:
Gene Tree for TRIM51 (if available)

Paralogs for TRIM51 Gene

genes like me logo Genes that share paralogs with TRIM51: view

Variants for TRIM51 Gene

Sequence variations from dbSNP and Humsavar for TRIM51 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type MAF
rs2063276 -- 55,885,487(+) CATGA(A/G)CTACT reference, missense
rs2063277 -- 55,885,495(+) ACTTC(A/C)TAGAC missense, reference
rs3862669 -- 55,887,680(+) CCCCA(A/G)TTCTC intron-variant
rs3862670 -- 55,888,456(+) TACTT(C/T)ATCCA intron-variant
rs4107303 -- 55,889,189(+) GCTCA(A/G)TGAAA intron-variant

Relevant External Links for TRIM51 Gene

HapMap Linkage Disequilibrium report
TRIM51

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for TRIM51 Gene

Disorders for TRIM51 Gene

No disorders were found for TRIM51 Gene.

No data available for UniProtKB/Swiss-Prot for TRIM51 Gene

Publications for TRIM51 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  2. Towards a proteome-scale map of the human protein-protein interaction network. (PMID: 16189514) Rual J.F. … Vidal M. (Nature 2005) 3
  3. Mass spectrometric analysis of lysine ubiquitylation reveals promiscuity at site level. (PMID: 21139048) Danielsen J.M. … Nielsen M.L. (Mol. Cell Proteomics 2011) 3
  4. Identification of a genomic reservoir for new TRIM genes in primate genomes. (PMID: 22144910) Han K. … Sawyer S.L. (PLoS Genet. 2011) 3
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4

Products for TRIM51 Gene

Sources for TRIM51 Gene

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