Free for academic non-profit institutions. Other users need a Commercial license

Aliases for TRIM49 Gene

Aliases for TRIM49 Gene

  • Tripartite Motif Containing 49 2 3
  • RNF18 3 4 6
  • Tripartite Motif-Containing 49 2 3
  • Ring Finger Protein 18 2 3
  • Tripartite Motif-Containing Protein 49 3
  • Testis-Specific RING Finger Protein 3
  • Testis-Specific Ring-Finger Protein 3
  • Testis-Specific RING-Finger Protein 4
  • RING Finger Protein 18 4
  • TRIM49L2 3
  • TRIM49A 3

External Ids for TRIM49 Gene

Previous Symbols for TRIM49 Gene

  • RNF18

Summaries for TRIM49 Gene

Entrez Gene Summary for TRIM49 Gene

  • The protein encoded by this gene contains a RING zinc finger, a motif known to be involved in protein-protein interactions. This gene has been found to be preferentially expressed in testis. Related pseudogenes and gene duplicates have also been identified on chromosome 11. [provided by RefSeq, Aug 2010]

GeneCards Summary for TRIM49 Gene

TRIM49 (Tripartite Motif Containing 49) is a Protein Coding gene. An important paralog of this gene is TRIM77.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRIM49 Gene

Genomics for TRIM49 Gene

Genomic Location for TRIM49 Gene

Start:
89,797,655 bp from pter
End:
89,808,575 bp from pter
Size:
10,921 bases
Orientation:
Minus strand

Genomic View for TRIM49 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TRIM49 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRIM49 Gene

Regulatory Elements for TRIM49 Gene

Proteins for TRIM49 Gene

  • Protein details for TRIM49 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P0CI25-TRI49_HUMAN
    Recommended name:
    Tripartite motif-containing protein 49
    Protein Accession:
    P0CI25
    Secondary Accessions:
    • A0AVR7
    • A0AVR9
    • Q6DJV1
    • Q9NS80

    Protein attributes for TRIM49 Gene

    Size:
    452 amino acids
    Molecular mass:
    52888 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TRIM49 Gene

Proteomics data for TRIM49 Gene at MOPED

Post-translational modifications for TRIM49 Gene

No Post-translational modifications

Other Protein References for TRIM49 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for TRIM49 Gene

Domains for TRIM49 Gene

Gene Families for TRIM49 Gene

HGNC:
  • RNF :RING-type (C3HC4) zinc fingers
  • TRIM :Tripartite motif containing / Tripartite motif containing

Protein Domains for TRIM49 Gene

UniProtKB/Swiss-Prot:

TRI49_HUMAN
Domain:
  • Contains 1 B30.2/SPRY domain.:
    • P0CI25
Family:
  • Belongs to the TRIM/RBCC family.:
    • P0CI25
Similarity:
  • Contains 1 B box-type zinc finger.:
    • P0CI25
  • Contains 1 RING-type zinc finger.:
    • P0CI25
genes like me logo Genes that share domains with TRIM49: view

Function for TRIM49 Gene

Gene Ontology (GO) - Molecular Function for TRIM49 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding --
GO:0005515 protein binding --
GO:0008270 zinc ion binding IEA --
genes like me logo Genes that share ontologies with TRIM49: view
genes like me logo Genes that share phenotypes with TRIM49: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for TRIM49 Gene

Localization for TRIM49 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for TRIM49 Gene COMPARTMENTS Subcellular localization image for TRIM49 gene
Compartment Confidence
cytosol 2
nucleus 2
mitochondrion 1

Gene Ontology (GO) - Cellular Components for TRIM49 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular IEA --
genes like me logo Genes that share ontologies with TRIM49: view

Pathways for TRIM49 Gene

SuperPathways for TRIM49 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TRIM49 Gene

None

No data available for Pathways by source for TRIM49 Gene

Transcripts for TRIM49 Gene

mRNA/cDNA for TRIM49 Gene

(1) REFSEQ mRNAs :
(4) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TRIM49 Gene

No ASD Table

Relevant External Links for TRIM49 Gene

GeneLoc Exon Structure for
TRIM49
ECgene alternative splicing isoforms for
TRIM49

Expression for TRIM49 Gene

mRNA expression in normal human tissues for TRIM49 Gene

mRNA differential expression in normal tissues according to GTEx for TRIM49 Gene

This gene is overexpressed in Testis (27.1) and Brain - Substantia nigra (6.9).

SOURCE GeneReport for Unigene cluster for TRIM49 Gene Hs.534218

mRNA Expression by UniProt/SwissProt for TRIM49 Gene

P0CI25-TRI49_HUMAN
Tissue specificity: Preferentially expressed in testis
genes like me logo Genes that share expressions with TRIM49: view

Orthologs for TRIM49 Gene

This gene was present in the common ancestor of chordates.

Orthologs for TRIM49 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 37
  • 97 (a)
ManyToMany
-- 37
  • 97 (a)
ManyToMany
-- 37
  • 98 (a)
ManyToMany
TRIM48 36
  • 98.89 (n)
  • 97.57 (a)
dog
(Canis familiaris)
Mammalia -- 37
  • 49 (a)
ManyToMany
LOC485140 36
  • 63.84 (n)
  • 50 (a)
oppossum
(Monodelphis domestica)
Mammalia -- 37
  • 33 (a)
ManyToMany
-- 37
  • 28 (a)
ManyToMany
-- 37
  • 28 (a)
ManyToMany
-- 37
  • 29 (a)
ManyToMany
-- 37
  • 21 (a)
ManyToMany
-- 37
  • 28 (a)
ManyToMany
-- 37
  • 28 (a)
ManyToMany
-- 37
  • 29 (a)
ManyToMany
-- 37
  • 29 (a)
ManyToMany
-- 37
  • 26 (a)
ManyToMany
-- 37
  • 24 (a)
ManyToMany
-- 37
  • 29 (a)
ManyToMany
-- 37
  • 29 (a)
ManyToMany
-- 37
  • 28 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 37
  • 17 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 37
  • 27 (a)
ManyToMany
-- 37
  • 29 (a)
ManyToMany
-- 37
  • 19 (a)
ManyToMany
-- 37
  • 21 (a)
ManyToMany
-- 37
  • 23 (a)
ManyToMany
-- 37
  • 24 (a)
ManyToMany
-- 37
  • 28 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii FP015862.1 37
  • 17 (a)
ManyToMany
Species with no ortholog for TRIM49:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for TRIM49 Gene

ENSEMBL:
Gene Tree for TRIM49 (if available)
TreeFam:
Gene Tree for TRIM49 (if available)

Paralogs for TRIM49 Gene

Pseudogenes.org Pseudogenes for TRIM49 Gene

genes like me logo Genes that share paralogs with TRIM49: view

Variants for TRIM49 Gene

Sequence variations from dbSNP and Humsavar for TRIM49 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type MAF
rs511376 -- 89,804,651(-) TGTTA(G/T)AAAGC intron-variant
rs548763 -- 89,802,883(-) CAAAT(G/T)GTCAA intron-variant
rs560294 -- 89,800,154(-) CCCCA(A/G)AACCC intron-variant
rs561966 -- 89,806,575(+) CTAAT(A/T)TGGTA intron-variant
rs582974 -- 89,798,735(+) TAAAA(A/T)GTTTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TRIM49 Gene

Variant ID Type Subtype PubMed ID
nsv898094 CNV Gain 21882294
dgv412e1 CNV Complex 17122850
nsv508644 CNV Loss 20534489
nsv426 CNV Insertion 18451855
nsv826025 CNV Gain 20364138
dgv233n67 CNV Gain 20364138
dgv1256n71 CNV Loss 21882294
dgv1257n71 CNV Loss 21882294
nsv832225 CNV Gain 17160897

Relevant External Links for TRIM49 Gene

HapMap Linkage Disequilibrium report
TRIM49

Disorders for TRIM49 Gene

No disorders were found for TRIM49 Gene.

No data available for UniProtKB/Swiss-Prot for TRIM49 Gene

Publications for TRIM49 Gene

  1. Isolation of a cDNA for a novel human RING finger protein gene, RNF18, by the virtual transcribed sequence (VTS) approach. (PMID: 11018261) Yoshikawa T. … Saito T. (Biochim. Biophys. Acta 2000) 2 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. Human chromosome 11 DNA sequence and analysis including novel gene identification. (PMID: 16554811) Taylor T.D. … Sakaki Y. (Nature 2006) 3 4
  4. Identification of a genomic reservoir for new TRIM genes in primate genomes. (PMID: 22144910) Han K. … Sawyer S.L. (PLoS Genet. 2011) 3
  5. Quantitative analysis of HSP90-client interactions reveals principles of substrate recognition. (PMID: 22939624) Taipale M. … Lindquist S. (Cell 2012) 3

Products for TRIM49 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate TRIM49
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for TRIM49
    • Block miRNA regulation of TRIM49 using miScript Target Protectors

    Sources for TRIM49 Gene

    Back to Top

    Content