Free for academic non-profit institutions. Other users need a Commercial license

Aliases for TRIM43 Gene

Aliases for TRIM43 Gene

  • Tripartite Motif Containing 43 2 3
  • Tripartite Motif-Containing 43 2 3
  • Tripartite Motif-Containing Protein 43 3
  • TRIM43A 3

External Ids for TRIM43 Gene

Summaries for TRIM43 Gene

GeneCards Summary for TRIM43 Gene

TRIM43 (Tripartite Motif Containing 43) is a Protein Coding gene. An important paralog of this gene is TRIM77.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRIM43 Gene

Genomics for TRIM43 Gene

Genomic Location for TRIM43 Gene

Start:
95,592,018 bp from pter
End:
95,599,778 bp from pter
Size:
7,761 bases
Orientation:
Plus strand

Genomic View for TRIM43 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TRIM43 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRIM43 Gene

Regulatory Elements for TRIM43 Gene

Transcription factor binding sites by QIAGEN in the TRIM43 gene promoter:

Proteins for TRIM43 Gene

  • Protein details for TRIM43 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96BQ3-TRI43_HUMAN
    Recommended name:
    Tripartite motif-containing protein 43
    Protein Accession:
    Q96BQ3
    Secondary Accessions:
    • Q53TJ7

    Protein attributes for TRIM43 Gene

    Size:
    446 amino acids
    Molecular mass:
    52265 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TRIM43 Gene

Proteomics data for TRIM43 Gene at MOPED

Post-translational modifications for TRIM43 Gene

No Post-translational modifications

Other Protein References for TRIM43 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for TRIM43 Gene

Domains for TRIM43 Gene

Gene Families for TRIM43 Gene

HGNC:
  • RNF :RING-type (C3HC4) zinc fingers
  • TRIM :Tripartite motif containing / Tripartite motif containing

UniProtKB/Swiss-Prot:

TRI43_HUMAN
Domain:
  • Contains 1 B30.2/SPRY domain.:
    • Q96BQ3
Family:
  • Belongs to the TRIM/RBCC family.:
    • Q96BQ3
Similarity:
  • Contains 1 B box-type zinc finger.:
    • Q96BQ3
  • Contains 1 RING-type zinc finger.:
    • Q96BQ3
genes like me logo Genes that share domains with TRIM43: view

Function for TRIM43 Gene

Gene Ontology (GO) - Molecular Function for TRIM43 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
GO:0008270 zinc ion binding IEA --
genes like me logo Genes that share ontologies with TRIM43: view

Phenotypes for TRIM43 Gene

GenomeRNAi human phenotypes for TRIM43:
genes like me logo Genes that share phenotypes with TRIM43: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for TRIM43 Gene

Localization for TRIM43 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for TRIM43 Gene COMPARTMENTS Subcellular localization image for TRIM43 gene
Compartment Confidence
nucleus 3
cytosol 2
golgi apparatus 1

Gene Ontology (GO) - Cellular Components for TRIM43 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular IEA --
genes like me logo Genes that share ontologies with TRIM43: view

Pathways for TRIM43 Gene

SuperPathways for TRIM43 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TRIM43 Gene

None

No data available for Pathways by source for TRIM43 Gene

Transcripts for TRIM43 Gene

mRNA/cDNA for TRIM43 Gene

(3) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(7) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TRIM43 Gene

Tripartite motif containing 43:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TRIM43 Gene

No ASD Table

Relevant External Links for TRIM43 Gene

GeneLoc Exon Structure for
TRIM43
ECgene alternative splicing isoforms for
TRIM43

Expression for TRIM43 Gene

mRNA expression in normal human tissues for TRIM43 Gene

mRNA differential expression in normal tissues according to GTEx for TRIM43 Gene

This gene is overexpressed in Testis (17.3), Brain - Cerebellar Hemisphere (7.2), Brain - Cerebellum (6.2), Brain - Nucleus accumbens (basal ganglia) (5.0), and Brain - Amygdala (4.1).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for TRIM43 Gene

SOURCE GeneReport for Unigene cluster for TRIM43 Gene Hs.232026

genes like me logo Genes that share expressions with TRIM43: view

Orthologs for TRIM43 Gene

This gene was present in the common ancestor of chordates.

Orthologs for TRIM43 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia LOC739911 36
  • 98.88 (n)
  • 97.76 (a)
TRIM43 37
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia LOC528629 36
  • 69.56 (n)
  • 52.05 (a)
TRIM43 37
  • 49 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Trim43a 37
  • 41 (a)
OneToMany
Trim43b 37
  • 41 (a)
OneToMany
Trim43c 37
  • 42 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia -- 37
  • 36 (a)
ManyToMany
-- 37
  • 27 (a)
ManyToMany
-- 37
  • 27 (a)
ManyToMany
-- 37
  • 30 (a)
ManyToMany
-- 37
  • 22 (a)
ManyToMany
-- 37
  • 29 (a)
ManyToMany
-- 37
  • 30 (a)
ManyToMany
-- 37
  • 30 (a)
ManyToMany
-- 37
  • 30 (a)
ManyToMany
-- 37
  • 29 (a)
ManyToMany
-- 37
  • 24 (a)
ManyToMany
-- 37
  • 32 (a)
ManyToMany
-- 37
  • 32 (a)
ManyToMany
-- 37
  • 29 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 37
  • 19 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia Trim43a 36
  • 65.01 (n)
  • 47.74 (a)
lizard
(Anolis carolinensis)
Reptilia -- 37
  • 29 (a)
ManyToMany
-- 37
  • 31 (a)
ManyToMany
-- 37
  • 19 (a)
ManyToMany
-- 37
  • 22 (a)
ManyToMany
-- 37
  • 24 (a)
ManyToMany
-- 37
  • 26 (a)
ManyToMany
-- 37
  • 28 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii trim109 37
  • 20 (a)
ManyToMany
Species with no ortholog for TRIM43:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for TRIM43 Gene

ENSEMBL:
Gene Tree for TRIM43 (if available)
TreeFam:
Gene Tree for TRIM43 (if available)

Paralogs for TRIM43 Gene

genes like me logo Genes that share paralogs with TRIM43: view

Variants for TRIM43 Gene

Sequence variations from dbSNP and Humsavar for TRIM43 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type MAF
rs1834137 -- 95,593,335(+) TTAAC(C/T)AGTAT intron-variant
rs1834139 -- 95,593,412(+) CATAG(C/T)AGCCT intron-variant
rs2463901 -- 95,595,546(-) TGCTA(C/T)CAGAT intron-variant
rs2551233 -- 95,592,571(+) tttca(C/T)tatgt intron-variant, upstream-variant-2KB
rs2551234 -- 95,592,623(+) acctc(C/G)gcctc intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for TRIM43 Gene

Variant ID Type Subtype PubMed ID
nsv7320 OTHER Inversion 18451855
nsv834300 CNV Gain 17160897
nsv874660 CNV Gain 21882294
nsv222 OTHER Inversion 15895083
nsv516044 CNV Gain+Loss 19592680

Relevant External Links for TRIM43 Gene

HapMap Linkage Disequilibrium report
TRIM43

Disorders for TRIM43 Gene

No disorders were found for TRIM43 Gene.

No data available for UniProtKB/Swiss-Prot for TRIM43 Gene

Publications for TRIM43 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  2. Analysis of the human E2 ubiquitin conjugating enzyme protein interaction network. (PMID: 19549727) Markson G. … Sanderson C.M. (Genome Res. 2009) 3
  3. A comprehensive framework of E2-RING E3 interactions of the human ubiquitin-proteasome system. (PMID: 19690564) van Wijk S.J. … Timmers H.T. (Mol. Syst. Biol. 2009) 3
  4. Mass spectrometric analysis of lysine ubiquitylation reveals promiscuity at site level. (PMID: 21139048) Danielsen J.M. … Nielsen M.L. (Mol. Cell Proteomics 2011) 3
  5. Toward an understanding of the protein interaction network of the human liver. (PMID: 21988832) Wang J. … Yang X. (Mol. Syst. Biol. 2011) 3

Products for TRIM43 Gene

Sources for TRIM43 Gene

Back to Top

Content