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Aliases for TRIM41 Gene

Aliases for TRIM41 Gene

  • Tripartite Motif Containing 41 2 3 5
  • RING-Finger Protein That Interacts With C Kinase 2 3
  • RING Finger-Interacting Protein With C Kinase 3 4
  • RING-Type E3 Ubiquitin Transferase TRIM41 3 4
  • RINCK 3 4
  • Tripartite Motif-Containing Protein 41 4
  • E3 Ubiquitin-Protein Ligase TRIM41 3
  • Tripartite Motif-Containing 41 2
  • EC 2.3.2.27 4

External Ids for TRIM41 Gene

Previous GeneCards Identifiers for TRIM41 Gene

  • GC05M181702
  • GC05P180712
  • GC05P180759
  • GC05P180582
  • GC05P180649
  • GC05P175377

Summaries for TRIM41 Gene

Entrez Gene Summary for TRIM41 Gene

  • This gene encodes a member of the tripartite motif (TRIM) family. The TRIM family is characterized by a signature motif composed of a RING finger, one or more B-box domains, and a coiled-coil region. This encoded protein may play a role in protein kinase C signaling. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Oct 2011]

GeneCards Summary for TRIM41 Gene

TRIM41 (Tripartite Motif Containing 41) is a Protein Coding gene. Among its related pathways are Innate Immune System and Class I MHC mediated antigen processing and presentation. GO annotations related to this gene include ligase activity. An important paralog of this gene is TRIM52.

UniProtKB/Swiss-Prot for TRIM41 Gene

  • Functions as an E3 ligase that catalyzes the ubiquitin-mediated degradation of protein kinase C.

Gene Wiki entry for TRIM41 Gene

No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRIM41 Gene

Genomics for TRIM41 Gene

Regulatory Elements for TRIM41 Gene

Enhancers for TRIM41 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05G181280 1.2 Ensembl ENCODE 10.9 +58.9 58900 2.2 HDGF PKNOX1 ATF1 CREB3L1 ARNT ARID4B SIN3A YY1 FOS NFYC TRIM52-AS1 RACK1 TRIM52 ENSG00000233937 ENSG00000247049 TRIM41 TRIM7 ENSG00000250900 ENSG00000248103 ENSG00000274525
GH05G181184 0.9 ENCODE 11.9 -40.4 -40364 0.2 ELF3 HDGF RB1 ARID4B RAD21 ZNF143 RELB IKZF2 MIXL1 THAP11 ENSG00000248514 TRIM7 TRIM41 ENSG00000247049 GC05P181179 TRL-AAG2-1
GH05G181179 0.7 dbSUPER 11.9 -42.7 -42671 1.2 CTCF PKNOX1 BHLHE40 TRIM22 REST ZNF2 RAD21 ZNF579 RAD51 IKZF1 TRIM7 TRIM41 ENSG00000247049 ENSG00000248514 ENSG00000233937 RACK1 MGAT1 ENSG00000248103 GC05P181179 TRL-AAG2-1
GH05G181182 0.5 ENCODE 11.9 -39.9 -39903 0.3 E2F1 MLLT1 ZXDB ENSG00000248514 TRIM7 TRIM41 ENSG00000247049 GC05P181179 TRL-AAG2-1
GH05G181187 1.8 FANTOM5 ENCODE dbSUPER 2.2 -32.3 -32269 6.5 MLX CREB3L1 AGO1 FEZF1 DMAP1 YY1 ZNF143 ZNF263 SP3 TBX21 ENSG00000248514 TRIM52 TRIM7 ENSG00000233937 ENSG00000248367 SNORD96A RACK1 TRIM52-AS1 TRIM41 ZFP62
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TRIM41 on UCSC Golden Path with GeneCards custom track

Promoters for TRIM41 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000191738 601 2601 CREB3L1 ZFP64 YBX1 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF548 ZNF263

Genomic Location for TRIM41 Gene

Chromosome:
5
Start:
181,222,499 bp from pter
End:
181,235,809 bp from pter
Size:
13,311 bases
Orientation:
Plus strand

Genomic View for TRIM41 Gene

Genes around TRIM41 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRIM41 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRIM41 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRIM41 Gene

Proteins for TRIM41 Gene

  • Protein details for TRIM41 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8WV44-TRI41_HUMAN
    Recommended name:
    E3 ubiquitin-protein ligase TRIM41
    Protein Accession:
    Q8WV44
    Secondary Accessions:
    • B3KNJ6
    • D3DWR9
    • Q5BKT0
    • Q7L484
    • Q96Q10
    • Q9BSL8

    Protein attributes for TRIM41 Gene

    Size:
    630 amino acids
    Molecular mass:
    71670 Da
    Quaternary structure:
    • Interacts with PRKCA.

    Three dimensional structures from OCA and Proteopedia for TRIM41 Gene

    Alternative splice isoforms for TRIM41 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for TRIM41 Gene

Post-translational modifications for TRIM41 Gene

No data available for DME Specific Peptides for TRIM41 Gene

Domains & Families for TRIM41 Gene

Gene Families for TRIM41 Gene

Suggested Antigen Peptide Sequences for TRIM41 Gene

Graphical View of Domain Structure for InterPro Entry

Q8WV44

UniProtKB/Swiss-Prot:

TRI41_HUMAN :
  • Belongs to the TRIM/RBCC family.
Family:
  • Belongs to the TRIM/RBCC family.
genes like me logo Genes that share domains with TRIM41: view

Function for TRIM41 Gene

Molecular function for TRIM41 Gene

UniProtKB/Swiss-Prot CatalyticActivity:
S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine + [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-cysteine + N(6)-ubiquitinyl-[acceptor protein]-L-lysine.
UniProtKB/Swiss-Prot Function:
Functions as an E3 ligase that catalyzes the ubiquitin-mediated degradation of protein kinase C.

Enzyme Numbers (IUBMB) for TRIM41 Gene

Gene Ontology (GO) - Molecular Function for TRIM41 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 16189514
GO:0008270 zinc ion binding IEA --
GO:0016740 transferase activity IEA --
GO:0042802 identical protein binding IPI 22493164
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with TRIM41: view
genes like me logo Genes that share phenotypes with TRIM41: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

No data available for Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRIM41 Gene

Localization for TRIM41 Gene

Subcellular locations from UniProtKB/Swiss-Prot for TRIM41 Gene

Cytoplasm. Nucleus.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for TRIM41 gene
Compartment Confidence
nucleus 5
cytosol 2

Gene Ontology (GO) - Cellular Components for TRIM41 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular IEA --
GO:0005634 nucleus IEA --
GO:0005730 nucleolus IDA --
GO:0005737 cytoplasm IEA --
GO:0016604 nuclear body IDA --
genes like me logo Genes that share ontologies with TRIM41: view

Pathways & Interactions for TRIM41 Gene

genes like me logo Genes that share pathways with TRIM41: view

UniProtKB/Swiss-Prot Q8WV44-TRI41_HUMAN

  • Pathway: Protein modification; protein ubiquitination.

Gene Ontology (GO) - Biological Process for TRIM41 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016567 protein ubiquitination IEA --
genes like me logo Genes that share ontologies with TRIM41: view

No data available for SIGNOR curated interactions for TRIM41 Gene

Drugs & Compounds for TRIM41 Gene

No Compound Related Data Available

Transcripts for TRIM41 Gene

Unigene Clusters for TRIM41 Gene

Tripartite motif containing 41:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRIM41 Gene

No ASD Table

Relevant External Links for TRIM41 Gene

GeneLoc Exon Structure for
TRIM41
ECgene alternative splicing isoforms for
TRIM41

Expression for TRIM41 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TRIM41 Gene

mRNA differential expression in normal tissues according to GTEx for TRIM41 Gene

This gene is overexpressed in Brain - Spinal cord (cervical c-1) (x4.1).

Protein differential expression in normal tissues from HIPED for TRIM41 Gene

This gene is overexpressed in Peripheral blood mononuclear cells (35.8), Pancreas (9.9), Blymphocyte (7.5), and CD8 Tcells (6.5).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for TRIM41 Gene



Protein tissue co-expression partners for TRIM41 Gene

NURSA nuclear receptor signaling pathways regulating expression of TRIM41 Gene:

TRIM41

SOURCE GeneReport for Unigene cluster for TRIM41 Gene:

Hs.441488

mRNA Expression by UniProt/SwissProt for TRIM41 Gene:

Q8WV44-TRI41_HUMAN
Tissue specificity: Expressed in multiple tissues with the highest levels in heart and skeletal muscle.

Evidence on tissue expression from TISSUES for TRIM41 Gene

  • Pancreas(4.5)
  • Liver(4.4)
  • Lung(4.2)
  • Nervous system(3.8)
  • Eye(2)
genes like me logo Genes that share expression patterns with TRIM41: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRIM41 Gene

Orthologs for TRIM41 Gene

This gene was present in the common ancestor of chordates.

Orthologs for TRIM41 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TRIM41 34
  • 99.33 (n)
dog
(Canis familiaris)
Mammalia TRIM41 34 35
  • 91.2 (n)
cow
(Bos Taurus)
Mammalia TRIM41 34 35
  • 91.04 (n)
rat
(Rattus norvegicus)
Mammalia Trim41 34
  • 88.16 (n)
mouse
(Mus musculus)
Mammalia Trim41 34 16 35
  • 87.39 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia -- 35
  • 81 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia -- 35
  • 28 (a)
ManyToMany
chicken
(Gallus gallus)
Aves TRIM41 34 35
  • 64.21 (n)
lizard
(Anolis carolinensis)
Reptilia -- 35
  • 54 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii trim105 35
  • 25 (a)
ManyToMany
Species where no ortholog for TRIM41 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for TRIM41 Gene

ENSEMBL:
Gene Tree for TRIM41 (if available)
TreeFam:
Gene Tree for TRIM41 (if available)

Paralogs for TRIM41 Gene

Variants for TRIM41 Gene

Sequence variations from dbSNP and Humsavar for TRIM41 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs1000123221 -- 181,231,791(+) TCACG(C/T)GTCTG intron-variant
rs1000433535 -- 181,222,227(+) CTTCA(A/G)AAGGG downstream-variant-500B, upstream-variant-2KB
rs1000508332 -- 181,222,143(+) AGCGC(C/T)TGCGC downstream-variant-500B, upstream-variant-2KB
rs1000781107 -- 181,227,359(+) TTTTA(-/T)TTTTT intron-variant
rs1000859379 -- 181,232,013(+) GGACC(A/T)TCACA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TRIM41 Gene

Variant ID Type Subtype PubMed ID
dgv5862n100 CNV gain 25217958
nsv428133 CNV gain 18775914
nsv462591 CNV loss 19166990
nsv517697 CNV loss 19592680
nsv600731 CNV loss 21841781
nsv830567 CNV loss 17160897
nsv950745 CNV deletion 24416366

Variation tolerance for TRIM41 Gene

Residual Variation Intolerance Score: 48.8% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 7.09; 80.47% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for TRIM41 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRIM41

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TRIM41 Gene

Disorders for TRIM41 Gene

Relevant External Links for TRIM41

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TRIM41

No disorders were found for TRIM41 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TRIM41 Gene

Publications for TRIM41 Gene

  1. Intracellular localization and domain organization of human TRIM41 proteins. (PMID: 16022281) Tanaka M. … Hanai R. (Mol. Biol. Rep. 2005) 2 3 4 64
  2. Amplitude control of protein kinase C by RINCK, a novel E3 ubiquitin ligase. (PMID: 17893151) Chen D. … Newton A.C. (J. Biol. Chem. 2007) 3 4 64
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  5. Large-scale cDNA transfection screening for genes related to cancer development and progression. (PMID: 15498874) Wan D. … Gu J. (Proc. Natl. Acad. Sci. U.S.A. 2004) 3 4 64

Products for TRIM41 Gene

Sources for TRIM41 Gene

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