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Aliases for TRIM41 Gene

Aliases for TRIM41 Gene

  • Tripartite Motif Containing 41 2 3
  • RING-Finger Protein That Interacts With C Kinase 2 3
  • RING Finger-Interacting Protein With C Kinase 3 4
  • RINCK 3 4
  • Tripartite Motif-Containing Protein 41 4
  • E3 Ubiquitin-Protein Ligase TRIM41 3
  • Tripartite Motif-Containing 41 2
  • EC 6.3.2.- 4

External Ids for TRIM41 Gene

Summaries for TRIM41 Gene

Entrez Gene Summary for TRIM41 Gene

  • This gene encodes a member of the tripartite motif (TRIM) family. The TRIM family is characterized by a signature motif composed of a RING finger, one or more B-box domains, and a coiled-coil region. This encoded protein may play a role in protein kinase C signaling. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Oct 2011]

GeneCards Summary for TRIM41 Gene

TRIM41 (Tripartite Motif Containing 41) is a Protein Coding gene. GO annotations related to this gene include ligase activity. An important paralog of this gene is TRIM50.

UniProtKB/Swiss-Prot for TRIM41 Gene

  • Functions as an E3 ligase that catalyzes the ubiquitin-mediated degradation of protein kinase C.

Gene Wiki entry for TRIM41 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRIM41 Gene

Genomics for TRIM41 Gene

Genomic Location for TRIM41 Gene

Start:
181,222,499 bp from pter
End:
181,235,809 bp from pter
Size:
13,311 bases
Orientation:
Plus strand

Genomic View for TRIM41 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TRIM41 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRIM41 Gene

Regulatory Elements for TRIM41 Gene

Proteins for TRIM41 Gene

  • Protein details for TRIM41 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8WV44-TRI41_HUMAN
    Recommended name:
    E3 ubiquitin-protein ligase TRIM41
    Protein Accession:
    Q8WV44
    Secondary Accessions:
    • B3KNJ6
    • D3DWR9
    • Q5BKT0
    • Q7L484
    • Q96Q10
    • Q9BSL8

    Protein attributes for TRIM41 Gene

    Size:
    630 amino acids
    Molecular mass:
    71670 Da
    Quaternary structure:
    • Interacts with PRKCA.

    Three dimensional structures from OCA and Proteopedia for TRIM41 Gene

    Alternative splice isoforms for TRIM41 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for TRIM41 Gene

Proteomics data for TRIM41 Gene at MOPED

Post-translational modifications for TRIM41 Gene

Other Protein References for TRIM41 Gene

No data available for DME Specific Peptides for TRIM41 Gene

Domains for TRIM41 Gene

Gene Families for TRIM41 Gene

HGNC:
  • RNF :RING-type (C3HC4) zinc fingers
  • TRIM :Tripartite motif containing / Tripartite motif containing

UniProtKB/Swiss-Prot:

TRI41_HUMAN
Domain:
  • Contains 1 B30.2/SPRY domain.:
    • Q8WV44
Family:
  • Belongs to the TRIM/RBCC family.:
    • Q8WV44
Similarity:
  • Contains 1 B box-type zinc finger.:
    • Q8WV44
  • Contains 1 RING-type zinc finger.:
    • Q8WV44
genes like me logo Genes that share domains with TRIM41: view

Function for TRIM41 Gene

Molecular function for TRIM41 Gene

UniProtKB/Swiss-Prot Function: Functions as an E3 ligase that catalyzes the ubiquitin-mediated degradation of protein kinase C.

Enzyme Numbers (IUBMB) for TRIM41 Gene

Gene Ontology (GO) - Molecular Function for TRIM41 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 17893151
GO:0008270 zinc ion binding IEA --
GO:0016874 ligase activity IEA --
GO:0046872 metal ion binding --
genes like me logo Genes that share ontologies with TRIM41: view

Phenotypes for TRIM41 Gene

genes like me logo Genes that share phenotypes with TRIM41: view

No data available for Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for TRIM41 Gene

Localization for TRIM41 Gene

Subcellular locations from UniProtKB/Swiss-Prot for TRIM41 Gene

Cytoplasm. Nucleus.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for TRIM41 Gene COMPARTMENTS Subcellular localization image for TRIM41 gene
Compartment Confidence
nucleus 5
cytosol 2

Gene Ontology (GO) - Cellular Components for TRIM41 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular --
GO:0005730 nucleolus IDA --
GO:0005737 cytoplasm IEA --
genes like me logo Genes that share ontologies with TRIM41: view

Pathways for TRIM41 Gene

SuperPathways for TRIM41 Gene

No Data Available

UniProtKB/Swiss-Prot Q8WV44-TRI41_HUMAN

  • Pathway: Protein modification; protein ubiquitination

Gene Ontology (GO) - Biological Process for TRIM41 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016567 protein ubiquitination IEA --
genes like me logo Genes that share ontologies with TRIM41: view

No data available for Pathways by source for TRIM41 Gene

Transcripts for TRIM41 Gene

Unigene Clusters for TRIM41 Gene

Tripartite motif containing 41:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TRIM41 Gene

No ASD Table

Relevant External Links for TRIM41 Gene

GeneLoc Exon Structure for
TRIM41
ECgene alternative splicing isoforms for
TRIM41

Expression for TRIM41 Gene

mRNA expression in normal human tissues for TRIM41 Gene

mRNA differential expression in normal tissues according to GTEx for TRIM41 Gene

This gene is overexpressed in Brain - Spinal cord (cervical c-1) (4.1).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for TRIM41 Gene

SOURCE GeneReport for Unigene cluster for TRIM41 Gene Hs.441488

mRNA Expression by UniProt/SwissProt for TRIM41 Gene

Q8WV44-TRI41_HUMAN
Tissue specificity: Expressed in multiple tissues with the highest levels in heart and skeletal muscle.
genes like me logo Genes that share expressions with TRIM41: view

Orthologs for TRIM41 Gene

This gene was present in the common ancestor of chordates.

Orthologs for TRIM41 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TRIM41 36
  • 99.33 (n)
  • 99.17 (a)
cow
(Bos Taurus)
Mammalia TRIM41 36
  • 91.04 (n)
  • 93.64 (a)
TRIM41 37
  • 97 (a)
OneToOne
dog
(Canis familiaris)
Mammalia TRIM41 36
  • 91.2 (n)
  • 94.28 (a)
TRIM41 37
  • 98 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Trim41 36
  • 87.39 (n)
  • 91.41 (a)
Trim41 16
Trim41 37
  • 94 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia -- 37
  • 28 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 37
  • 81 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia Trim41 36
  • 88.16 (n)
  • 92.04 (a)
chicken
(Gallus gallus)
Aves TRIM41 36
  • 64.21 (n)
  • 61.28 (a)
TRIM41 37
  • 56 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 37
  • 54 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii trim105 37
  • 25 (a)
ManyToMany
Species with no ortholog for TRIM41:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for TRIM41 Gene

ENSEMBL:
Gene Tree for TRIM41 (if available)
TreeFam:
Gene Tree for TRIM41 (if available)

Paralogs for TRIM41 Gene

genes like me logo Genes that share paralogs with TRIM41: view

Variants for TRIM41 Gene

Sequence variations from dbSNP and Humsavar for TRIM41 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type MAF
rs185272 -- 181,234,256(+) GAGCG(C/G)CGGCA synonymous-codon, reference, nc-transcript-variant
rs1044207 -- 181,235,517(+) CCCCA(A/C)ACCCC utr-variant-3-prime, nc-transcript-variant
rs2241371 - 181,234,195(-) CCGTG(C/T)CAGGG reference, missense, nc-transcript-variant
rs2241372 -- 181,233,340(-) ACAGC(A/G)TTCCC intron-variant
rs2259749 -- 181,225,241(+) AATGC(C/T)CTGCA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TRIM41 Gene

Variant ID Type Subtype PubMed ID
nsv428133 CNV Gain 18775914
nsv883305 CNV Gain 21882294
nsv830567 CNV Loss 17160897
dgv6408n71 CNV Loss 21882294
nsv517697 CNV Loss 19592680
dgv6409n71 CNV Loss 21882294
nsv462591 CNV Loss 19166990

Relevant External Links for TRIM41 Gene

HapMap Linkage Disequilibrium report
TRIM41

Disorders for TRIM41 Gene

No disorders were found for TRIM41 Gene.

No data available for UniProtKB/Swiss-Prot for TRIM41 Gene

Publications for TRIM41 Gene

  1. Intracellular localization and domain organization of human TRIM41 proteins. (PMID: 16022281) Tanaka M. … Hanai R. (Mol. Biol. Rep. 2005) 2 3 4
  2. M phase-specific association of human topoisomerase IIIbeta with chromosomes. (PMID: 11549288) Kobayashi M. … Hanai R. (Biochem. Biophys. Res. Commun. 2001) 3 4
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  5. Large-scale cDNA transfection screening for genes related to cancer development and progression. (PMID: 15498874) Wan D. … Gu J. (Proc. Natl. Acad. Sci. U.S.A. 2004) 3 4

Products for TRIM41 Gene

Sources for TRIM41 Gene

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