Free for academic non-profit institutions. Other users need a Commercial license

TRIM41 Gene(Protein Coding)

Tripartite Motif Containing 41

GCID:
GC05P181222
GIFtS:
51
Genes Participants
UDN Logo

Aliases for TRIM41 Gene

Aliases for TRIM41 Gene

  • Tripartite Motif Containing 41 2 3 5
  • RING-Finger Protein That Interacts With C Kinase 2 3
  • RING Finger-Interacting Protein With C Kinase 3 4
  • RINCK 3 4
  • Tripartite Motif-Containing Protein 41 4
  • Tripartite Motif-Containing 41 2
  • EC 6.3.2.- 4

External Ids for TRIM41 Gene

Previous GeneCards Identifiers for TRIM41 Gene

  • GC05M181702
  • GC05P180712
  • GC05P180759
  • GC05P180582
  • GC05P180649
  • GC05P175377

Summaries for TRIM41 Gene

Entrez Gene Summary for TRIM41 Gene

  • This gene encodes a member of the tripartite motif (TRIM) family. The TRIM family is characterized by a signature motif composed of a RING finger, one or more B-box domains, and a coiled-coil region. This encoded protein may play a role in protein kinase C signaling. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Oct 2011]

GeneCards Summary for TRIM41 Gene

TRIM41 (Tripartite Motif Containing 41) is a Protein Coding gene. Among its related pathways are Antigen processing- Ubiquitination and Proteasome degradation and Immune System. GO annotations related to this gene include ligase activity. An important paralog of this gene is TRIM52.

UniProtKB/Swiss-Prot for TRIM41 Gene

  • Functions as an E3 ligase that catalyzes the ubiquitin-mediated degradation of protein kinase C.

Gene Wiki entry for TRIM41 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRIM41 Gene

Genomics for TRIM41 Gene

Products:

  1. Regulatory Element

Regulatory Elements for TRIM41 Gene

Enhancers for TRIM41 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around TRIM41 on UCSC Golden Path with GeneCards custom track

Promoters for TRIM41 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around TRIM41 on UCSC Golden Path with GeneCards custom track

Transcription factor binding sites by QIAGEN in the TRIM41 gene promoter:

Genomic Location for TRIM41 Gene

Chromosome:
5
Start:
181,222,499 bp from pter
End:
181,235,809 bp from pter
Size:
13,311 bases
Orientation:
Plus strand

Genomic View for TRIM41 Gene

Genes around TRIM41 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRIM41 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRIM41 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for TRIM41 Gene

Proteins for TRIM41 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

  • Protein details for TRIM41 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8WV44-TRI41_HUMAN
    Recommended name:
    E3 ubiquitin-protein ligase TRIM41
    Protein Accession:
    Q8WV44
    Secondary Accessions:
    • B3KNJ6
    • D3DWR9
    • Q5BKT0
    • Q7L484
    • Q96Q10
    • Q9BSL8

    Protein attributes for TRIM41 Gene

    Size:
    630 amino acids
    Molecular mass:
    71670 Da
    Quaternary structure:
    • Interacts with PRKCA.

    Three dimensional structures from OCA and Proteopedia for TRIM41 Gene

    Alternative splice isoforms for TRIM41 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for TRIM41 Gene

Proteomics data for TRIM41 Gene at MOPED

Protein Expression for TRIM41 Gene

See protein expression from ProteomicsDB, MOPED, PaxDb, and MaxQB

Post-translational modifications for TRIM41 Gene

Other Protein References for TRIM41 Gene

ENSEMBL proteins:
REFSEQ proteins:

Antibody Products

  • Santa Cruz Biotechnology (SCBT) Antibodies for TRIM41

No data available for DME Specific Peptides for TRIM41 Gene

Domains & Families for TRIM41 Gene

Gene Families for TRIM41 Gene

HGNC:

Protein Domains for TRIM41 Gene

InterPro:
Blocks:
ProtoNet:

Suggested Antigen Peptide Sequences for TRIM41 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8WV44

UniProtKB/Swiss-Prot:

TRI41_HUMAN :
  • Contains 1 B30.2/SPRY domain.
  • Belongs to the TRIM/RBCC family.
  • Contains 1 B box-type zinc finger.
Domain:
  • Contains 1 B30.2/SPRY domain.
Family:
  • Belongs to the TRIM/RBCC family.
Similarity:
  • Contains 1 B box-type zinc finger.
  • Contains 1 RING-type zinc finger.
genes like me logo Genes that share domains with TRIM41: view

Function for TRIM41 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Molecular function for TRIM41 Gene

UniProtKB/Swiss-Prot Function:
Functions as an E3 ligase that catalyzes the ubiquitin-mediated degradation of protein kinase C.

Enzyme Numbers (IUBMB) for TRIM41 Gene

Gene Ontology (GO) - Molecular Function for TRIM41 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 17893151
GO:0016874 ligase activity IEA --
genes like me logo Genes that share ontologies with TRIM41: view

Phenotypes for TRIM41 Gene

GenomeRNAi human phenotypes for TRIM41:
genes like me logo Genes that share phenotypes with TRIM41: view

Animal Model Products

Inhibitory RNA Products

Flow Cytometry Products

No data available for Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRIM41 Gene

Localization for TRIM41 Gene

Subcellular locations from UniProtKB/Swiss-Prot for TRIM41 Gene

Cytoplasm. Nucleus.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for TRIM41 Gene COMPARTMENTS Subcellular localization image for TRIM41 gene
Compartment Confidence
nucleus 5
cytosol 2

Gene Ontology (GO) - Cellular Components for TRIM41 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular IEA --
GO:0005737 cytoplasm IEA --
genes like me logo Genes that share ontologies with TRIM41: view

Pathways & Interactions for TRIM41 Gene

genes like me logo Genes that share pathways with TRIM41: view

UniProtKB/Swiss-Prot Q8WV44-TRI41_HUMAN

  • Pathway: Protein modification; protein ubiquitination.

Gene Ontology (GO) - Biological Process for TRIM41 Gene

None

No data available for SIGNOR curated interactions for TRIM41 Gene

Drugs & Compounds for TRIM41 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for TRIM41 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for TRIM41 Gene

(6) REFSEQ mRNAs :
(18) Additional mRNA sequences :
(177) Selected AceView cDNA sequences:
(10) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TRIM41 Gene

Tripartite motif containing 41:
Representative Sequences:

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRIM41 Gene

No ASD Table

Relevant External Links for TRIM41 Gene

GeneLoc Exon Structure for
TRIM41
ECgene alternative splicing isoforms for
TRIM41

Expression for TRIM41 Gene

Products:

  1. Primer

mRNA expression in normal human tissues for TRIM41 Gene

mRNA expression in normal human tissues for TRIM41 Gene
mRNA expression by BioGPS for TRIM41 GenemRNA expression by GTEx for TRIM41 Gene

mRNA differential expression in normal tissues according to GTEx for TRIM41 Gene

This gene is overexpressed in Brain - Spinal cord (cervical c-1) (x4.1).

Protein differential expression in normal tissues from HIPED for TRIM41 Gene

This gene is overexpressed in Peripheral blood mononuclear cells (35.8), Pancreas (9.9), Blymphocyte (7.5), and CD8 Tcells (6.5).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for TRIM41 Gene



SOURCE GeneReport for Unigene cluster for TRIM41 Gene Hs.441488

mRNA Expression by UniProt/SwissProt for TRIM41 Gene

Q8WV44-TRI41_HUMAN
Tissue specificity: Expressed in multiple tissues with the highest levels in heart and skeletal muscle.
genes like me logo Genes that share expression patterns with TRIM41: view

Protein tissue co-expression partners for TRIM41 Gene

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery for TRIM41 Gene

Orthologs for TRIM41 Gene

This gene was present in the common ancestor of chordates.

Orthologs for TRIM41 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
 Mammalia TRIM41 35
  • 91.04 (n)
  • 93.64 (a)
TRIM41 36
  • 97 (a)
 OneToOne
dog
(Canis familiaris)
 Mammalia TRIM41 35
  • 91.2 (n)
  • 94.28 (a)
TRIM41 36
  • 98 (a)
 OneToOne
mouse
(Mus musculus)
 Mammalia Trim41 35
  • 87.39 (n)
  • 91.41 (a)
Trim41 16
Trim41 36
  • 94 (a)
 OneToOne
chimpanzee
(Pan troglodytes)
 Mammalia TRIM41 35
  • 99.33 (n)
  • 99.17 (a)
rat
(Rattus norvegicus)
 Mammalia Trim41 35
  • 88.16 (n)
  • 92.04 (a)
oppossum
(Monodelphis domestica)
 Mammalia -- 36
  • 28 (a)
 ManyToMany
platypus
(Ornithorhynchus anatinus)
 Mammalia -- 36
  • 81 (a)
 OneToMany
chicken
(Gallus gallus)
 Aves TRIM41 35
  • 64.21 (n)
  • 61.28 (a)
TRIM41 36
  • 56 (a)
 OneToMany
lizard
(Anolis carolinensis)
 Reptilia -- 36
  • 54 (a)
 OneToMany
zebrafish
(Danio rerio)
 Actinopterygii trim105 36
  • 25 (a)
 ManyToMany
Species with no ortholog for TRIM41:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for TRIM41 Gene

ENSEMBL:
Gene Tree for TRIM41 (if available)
TreeFam:
Gene Tree for TRIM41 (if available)

Paralogs for TRIM41 Gene

Paralogs for TRIM41 Gene

(33) SIMAP similar genes for TRIM41 Gene using alignment to 5 proteins:

genes like me logo Genes that share paralogs with TRIM41: view

Variants for TRIM41 Gene

Sequence variations from dbSNP and Humsavar for TRIM41 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
VAR_027914 -
rs2241371 - 181,234,195(-) CCGTG(C/T)CAGGG nc-transcript-variant, reference, missense
rs2770957 -- 181,229,734(+) GGGAA(C/G)TCATG intron-variant
rs1044207 -- 181,235,517(+) CCCCA(A/C)ACCCC nc-transcript-variant, downstream-variant-500B, utr-variant-3-prime
rs185272 -- 181,234,256(+) GAGCG(C/G)CGGCA nc-transcript-variant, reference, synonymous-codon

Structural Variations from Database of Genomic Variants (DGV) for TRIM41 Gene

Variant ID Type Subtype PubMed ID
nsv428133 CNV Gain 18775914
nsv883305 CNV Gain 21882294
nsv830567 CNV Loss 17160897
dgv6408n71 CNV Loss 21882294
nsv517697 CNV Loss 19592680
dgv6409n71 CNV Loss 21882294
nsv462591 CNV Loss 19166990

Variation tolerance for TRIM41 Gene

Residual Variation Intolerance Score: 48.8% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 7.09; 80.47% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Relevant External Links for TRIM41 Gene

Disorders for TRIM41 Gene

Relevant External Links for TRIM41

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TRIM41

No disorders were found for TRIM41 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TRIM41 Gene

Publications for TRIM41 Gene

  1. Intracellular localization and domain organization of human TRIM41 proteins. (PMID: 16022281) Tanaka M. … Hanai R. (Mol. Biol. Rep. 2005) 2 3 4 67
  2. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3
  3. A human interactome in three quantitative dimensions organized by stoichiometries and abundances. (PMID: 26496610) Hein M.Y. … Mann M. (Cell 2015) 3
  4. A Dynamic Protein Interaction Landscape of the Human Centrosome-Cilium Interface. (PMID: 26638075) Gupta G.D. … Pelletier L. (Cell 2015) 3
  5. The central role of EED in the orchestration of polycomb group complexes. (PMID: 24457600) Cao Q. … Chinnaiyan A.M. (Nat Commun 2014) 3

Products for TRIM41 Gene

Sources for TRIM41 Gene

Content