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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

TRIM35 Gene

protein-coding   GIFtS: 45
GCID: GC08M027142

tripartite motif containing 35

(Previous name: tripartite motif-containing 35 )
  Search for TRIM35
in our new
 Human Malady Compendium 
Biological research products
for TRIM35
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
Tripartite Motif Containing 351 2     KIAA10981 3
HLS51 2 3     Hemopoietic Lineage Switch Protein 52 3
MAIR1 2     Tripartite Motif-Containing Protein 352
Tripartite Motif-Containing 351 2     

External Ids:    HGNC: 162851   Entrez Gene: 230872   Ensembl: ENSG000001042287   UniProtKB: Q9UPQ43   

Export aliases for TRIM35 gene to outside databases

Previous GC identifers: GC08M026944 GC08M027647 GC08M027164 GC08M027198 GC08M025687


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for TRIM35:
The protein encoded by this gene is a member of the tripartite motif (TRIM) family. The TRIM motif includes three
zinc-binding domains, a RING, a B-box type 1 and a B-box type 2, and a coiled-coil region. The function of this
protein has not been identified. (provided by RefSeq, Jul 2008)

UniProtKB/Swiss-Prot: TRI35_HUMAN, Q9UPQ4
Function: May play a role as a tumor suppressor. Implicated in the cell death mechanism (By similarity)




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000008.10  NC_018919.1  NT_167187.1  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the TRIM35 gene promoter:
         STAT1   NRSF form 1   STAT3   NRSF form 2   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidTRIM35 promoter sequence
   Search SABiosciences Chromatin IP Primers for TRIM35

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat TRIM35


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 8p21.2   Ensembl cytogenetic band:  8p21.2   HGNC cytogenetic band: 8p21.2

TRIM35 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
TRIM35 gene location

GeneLoc information about chromosome 8         GeneLoc Exon Structure

GeneLoc location for GC08M027142:  view genomic region     (about GC identifiers)

Start:
27,142,404 bp from pter      End:
27,168,836 bp from pter
Size:
26,433 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: TRI35_HUMAN, Q9UPQ4 (See protein sequence)
Recommended Name: Tripartite motif-containing protein 35  
Size: 493 amino acids; 56540 Da
Subcellular location: Cytoplasm (By similarity). Nucleus (By similarity). Note=Found predominantly in cytoplasm with a
granular distribution. Found in punctuate nuclear bodies (By similarity)
Sequence caution: Sequence=BAA83050.1; Type=Erroneous initiation;
Secondary accessions: Q86XQ0 Q8WVA4
Alternative splicing: 2 isoforms:  Q9UPQ4-1   Q9UPQ4-2   (No experimental confirmation available)

Explore the universe of human proteins at neXtProt for TRIM35: NX_Q9UPQ4

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q9UPQ4

  • TRIM35 Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins: NP_741983.2  
    ENSEMBL proteins: 
     ENSP00000301924   ENSP00000429356   ENSP00000428770  

    Human Recombinant Protein Products: 
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    Novus Biologicals TRIM35 Lysate
    Browse Sino Biological Recombinant Proteins
    Browse ProSpec Recombinant Proteins
    Uscn Proteins for TRIM35

    Gene Ontology (GO): 3 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005634nucleus ISS--
    GO:0005730NOT nucleolus IDA--
    GO:0005737cytoplasm ISS--


    TRIM35 for ontologies           About GeneDecksing



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    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    TRIM35 for domains           About GeneDecksing

    5/9 InterPro domains/families (see all 9):
     IPR006574 PRY
     IPR017907 Znf_RING_CS
     IPR001841 Znf_RING
     IPR001870 B30.2/SPRY
     IPR003877 SPRY_rcpt

    Graphical View of Domain Structure for InterPro Entry Q9UPQ4

    ProtoNet protein and cluster: Q9UPQ4

    4 Blocks protein families:
    IPB000315 B-box zinc finger signature
    IPB001841 Zn-finger
    IPB003879 Butyrophylin C-terminal DUF signature
    IPB006574 SPRY-associated domain


    UniProtKB/Swiss-Prot: TRI35_HUMAN, Q9UPQ4
    Domain: The RING finger domain and the coiled-coil region are required for the apoptosis-inducing activity (By
    similarity)
    Similarity: Belongs to the TRIM/RBCC family
    Similarity: Contains 1 B box-type zinc finger
    Similarity: Contains 1 B30.2/SPRY domain
    Similarity: Contains 1 RING-type zinc finger


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Function Summary:

         UniProtKB/Swiss-Prot: TRI35_HUMAN, Q9UPQ4
    Function: May play a role as a tumor suppressor. Implicated in the cell death mechanism (By similarity)

    miRNA
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    hsa-miR-424 hsa-miR-187* hsa-miR-15a hsa-miR-561 hsa-miR-205* hsa-miR-16 hsa-miR-195 hsa-miR-497
    SwitchGear 3'UTR luciferase reporter plasmidTRIM35 3' UTR sequence
    Inhib. RNA
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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TRIM35

    Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003674molecular_function ND--
    GO:0008270zinc ion binding IEA--


    TRIM35 for ontologies           About GeneDecksing



    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for TRIM35

    STRING Interaction Network Preview (showing 5 interactants - click image to see 9)

    5/19 Interacting proteins for TRIM35 (Q9UPQ43 ENSP000003019244) via UniProtKB, MINT, STRING, and/or I2D (see all 19)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    TSG101Q998163, ENSP000002519684I2D: score=2 STRING: ENSP00000251968
    UBE2D2P628373, ENSP000003817174I2D: score=2 STRING: ENSP00000381717
    UBE2D3P610773, ENSP000003497224I2D: score=2 STRING: ENSP00000349722
    UBE2UQ5VVX93, ENSP000003601164I2D: score=2 STRING: ENSP00000360116
    UBE2WQ96B023, ENSP000003974534I2D: score=2 STRING: ENSP00000397453
    About this table

    Gene Ontology (GO): 5 biological process terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006915apoptotic process IEA--
    GO:0006917induction of apoptosis ISS--
    GO:0008285negative regulation of cell proliferation IEA--
    GO:0043065positive regulation of apoptotic process IDA14662771
    GO:0045930negative regulation of mitotic cell cycle IDA14662771


    TRIM35 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for TRIM35
    Search CenterWatch for drugs/clinical trials and news about TRIM35 / TRI35 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for TRIM35 gene: 
    NM_171982.3  

    Unigene Cluster for TRIM35:

    Tripartite motif containing 35
    Hs.104223  [show with all ESTs]
    Unigene Representative Sequence: NM_171982
    4 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000305364(uc003xfl.1 uc010lup.1 uc003xfm.1) ENST00000521283
    ENST00000521253 ENST00000519219

    miRNA
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    hsa-miR-424 hsa-miR-187* hsa-miR-15a hsa-miR-561 hsa-miR-205* hsa-miR-16 hsa-miR-195 hsa-miR-497
    SwitchGear 3'UTR luciferase reporter plasmidTRIM35 3' UTR sequence
    Inhib. RNA
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      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat TRIM35
      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat TRIM35

    Additional cDNA sequence: 

    AB029021.1 AF492463.1 AK308236.1 BC018337.1 BC069226.1 

    5 DOTS entries:

    DT.443640  DT.100021843  DT.205310  DT.95369680  DT.40263284 

    24/98 AceView cDNA sequences (see all 98):

    AA700796 BE670832 AA861940 BM931950 AI272949 NM_171982 BM454208 BQ931984 
    AA614569 AA115933 NM_015066 BU607501 BM977174 BM090689 BE674344 BQ877812 
    BQ184595 BQ060736 CB178062 BU622420 AF492463 AI075822 CF125208 AB029021 

    GeneLoc Exon Structure

    5 Alternative Splicing Database (ASD) splice patterns (SP) for TRIM35    About this scheme

    ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4a · 4b ^ 5 ^ 6a · 6b ^ 7
    SP1:                                                        -         
    SP2:                    -                                             
    SP3:                                                                  
    SP4:                                                                  
    SP5:                    -     -                                       


    ECgene alternative splicing isoforms for TRIM35

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    TRIM35 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: CACCTGGTTG

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)

    About this image

    TRIM35 expression in embryonic tissues and stem cells
    Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine    About this table
    1 LifeMap In Vivo Development Anatomical Compartment/Cell 
    Tissue Anatomical Compartment CellCategory (developmental path)
    Reproductive SystemMesonephrosReproductive System
    Expression: Positive    Negative     Selective marker
    Experimental details: Curated     Microarrays     In-situ hybridization

    See TRIM35 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for TRIM35

    SOURCE GeneReport for Unigene cluster: Hs.104223
        SABiosciences Custom PCR Arrays for TRIM35
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TRIM35

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of chordates.

    Orthologs for TRIM35 gene from 3/10 species (see all 10)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    chicken
    (Gallus gallus)
    Aves TRIM351 tripartite motif containing 35 66.81(n)
    57.08(a)
      771180  XM_001234475.2  XP_001234476.2 
    lizard
    (Anolis carolinensis)
    Reptilia --
    --
    (see all 5)
    --
    43(a)
    41(a)
    (see all 5)
    1 ↔ many
    1 ↔ many
    (see all 5)
    GL343547.1(451227-467507)
    5(63148378-63149698)
    zebrafish
    (Danio rerio)
    Actinopterygii trim35-361 tripartite motif containing 35-36 47.27(n)
    37.62(a)
      445068  NM_001003462.1  NP_001003462.1 


    ENSEMBL Gene Tree for TRIM35 (if available)
    TreeFam Gene Tree for TRIM35 (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for TRIM35 gene
    TRIM502  TRIM312  TRIM522  TRIM732  TRIM692  TRIM742  TRIM622  TRIM412  
    TRIM722  
    8 SIMAP similar genes for TRIM35 using alignment to 3 protein entries:     TRI35_HUMAN (see all proteins):
    TRIM41    TRIM39    BMI1    RAD18    TRIM26    TRIM5
    TRIM22    TRIM60

    TRIM35 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/439 NCBI SNPs in TRIM35 are shown (see all 439    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 8 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1921133741,2
    --27141919(+) CAGGTA/GGCCTA 1 -- ds50010--------
    rs558377921,2
    C,--27141970(+) TGTGAC/TGGGAC 1 -- ds50013Minor allele frequency- T:0.07NA EA 242
    rs736815121,2
    C,--27141987(+) GACTCC/TGGGTA 1 -- ds50012Minor allele frequency- T:0.05WA 120
    rs1834388911,2
    --27142009(+) TGCAGC/TGACAA 1 -- ds50010--------
    rs1869547981,2
    --27142049(+) CACTGC/TAGCGG 1 -- ds50010--------
    rs47330471,2
    C,F,A,H,--27142157(+) AGAGAG/ACTGCT 1 -- ds500125Minor allele frequency- A:0.39NA NS EA WA 2670
    rs1442629261,2
    --27142271(+) CGCTTC/TCTGCC 1 -- ds50010--------
    rs101042511,2
    C,H,--27142300(+) TCCCTG/AAGCCA 1 -- ds50014Minor allele frequency- A:0.00NS EA 412
    rs1177499141,2
    C,F,--27142319(+) AACTTA/CCATGG 1 -- ds50011Minor allele frequency- C:0.02NA 120
    rs1396336141,2
    --27142356(+) TTTCTA/GGGATA 1 -- ds50010--------

    HapMap Linkage Disequilibrium report for TRIM35 (27142404 - 27168836 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
          Database of Genomic Variants (DGV) variations for TRIM35: --

    SABiosciences Cancer Mutation PCR Assays
    QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing TRIM35
    DNA2.0 Custom Variant and Variant Library Synthesis for TRIM35

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section
      --

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for TRIM35 gene, integrated from 9 sources (see all 12):
    (articles sorted by number of sources associating them with TRIM35)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. HLS5, a novel RBCC (ring finger, B box, coiled-coil) family member isolated from a hemopoietic lineage switch, is a candidate tumor suppressor. (PubMed id 14662771)1, 2, 3 Lalonde J.P....Klinken S.P. (2004)
    2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    3. Cloning and characterization of a novel RING-B-box-coiled-coil protein with apoptotic function. (PubMed id 12692137)1, 3 Kimura F....Motoyoshi K. (2003)
    4. The tripartite motif family identifies cell compartments. (PubMed id 11331580)1, 3 Reymond A.... Ballabio A. (2001)
    5. Prediction of the coding sequences of unidentified human genes. XIV. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. (PubMed id 10470851)1, 2 Kikuno R....Ohara O. (1999)
    6. Systematic analysis of dimeric E3-RING interactions re veals increased combinatorial complexity in human ubiquitination networks. (PubMed id 22493164)1 Woodsmith J....Sanderson C.M. (2012)
    7. System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation. (PubMed id 21406692)2 Rigbolt K.T....Blagoev B. (2011)
    8. Analysis of the human E2 ubiquitin conjugating enzyme protein interaction network. (PubMed id 19549727)1 Markson G....Sanderson C.M. (2009)
    9. A comprehensive framework of E2-RING E3 interactions of the human ubiquitin-proteasome system. (PubMed id 19690564)1 van Wijk S.J....Timmers H.T. (2009)
    10. Toward a confocal subcellular atlas of the human proteome. (PubMed id 18029348)1 Barbe L....Andersson-Svahn H. (2008)

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    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 23087 HGNC: 16285 AceView: TRIM35 Ensembl:ENSG00000104228 euGenes: HUgn23087
    ECgene: TRIM35 H-InvDB: TRIM35

    (According to HUGE)
    About This Section
    HUGE: KIAA1098

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for TRIM35 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for TRIM35 gene:
    Search GeneIP for patents involving TRIM35

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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