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Aliases for TRIM34 Gene

Aliases for TRIM34 Gene

  • Tripartite Motif Containing 34 2 3 5
  • Interferon-Responsive Finger Protein 1 3 4
  • RNF21 3 4
  • IFP1 3 4
  • Ring Finger Protein 21, Interferon-Responsive 3
  • Tripartite Motif-Containing Protein 34 3
  • Tripartite Motif-Containing 34 2
  • RING Finger Protein 21 4
  • EC 6.3.2 61

External Ids for TRIM34 Gene

Previous HGNC Symbols for TRIM34 Gene

  • RNF21

Previous GeneCards Identifiers for TRIM34 Gene

  • GC11P006372
  • GC11P005920
  • GC11P005583
  • GC11P005582
  • GC11P005584
  • GC11P005574
  • GC11P005602
  • GC11P005300
  • GC11P005619

Summaries for TRIM34 Gene

Entrez Gene Summary for TRIM34 Gene

  • The protein encoded by this gene is a member of the tripartite motif (TRIM) family. The TRIM motif includes three zinc-binding domains, a RING, B-box type 1 and B-box type 2 domain, and a coiled-coil region. Expression of this gene is up-regulated by interferon. This gene is mapped to chromosome 11p15, where it resides within a TRIM gene cluster. Alternative splicing results in multiple transcript variants. A read-through transcript from the upstream TRIM6 gene has also been observed, which results in a fusion product from these neighboring family members. [provided by RefSeq, Oct 2010]

GeneCards Summary for TRIM34 Gene

TRIM34 (Tripartite Motif Containing 34) is a Protein Coding gene. Among its related pathways are Interferon gamma signaling and Immune System. An important paralog of this gene is TRIM6-TRIM34.

UniProtKB/Swiss-Prot for TRIM34 Gene

  • May function as antiviral protein and may contribute to the defense against retroviral infections.

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRIM34 Gene

Genomics for TRIM34 Gene

Regulatory Elements for TRIM34 Gene

Enhancers for TRIM34 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11F006479 1.1 ENCODE 9.9 +861.7 861669 3.6 HDGF PKNOX1 CREB3L1 MLX WRNIP1 ARID4B SIN3A DMAP1 YY1 SP3 PRKCDBP TIMM10B FAM160A2 APBB1 SMPD1 TRIM34 TRIM3
GH11F006233 1.1 ENCODE 9.9 +615.1 615086 2.5 HDGF PKNOX1 CREB3L1 MLX ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143 FAM160A2 CNGA4 CCKBR TRIM34 GC11M006236
GH11F005623 1.2 FANTOM5 ENCODE 8 +5.7 5672 3.2 TBP HDAC1 PKNOX1 TBL1XR1 WRNIP1 SIN3A RAD21 RFX5 YY1 FOS TRIM5 TRIM34 TRIM22 OR51B2 OR56B4 OR56A1 OR56A3 OR52N4 OR51Q1 OR52E6
GH11F005504 0.9 ENCODE 10 -114.6 -114610 2.2 HDGF HDAC1 PKNOX1 CREB3L1 NFRKB ZBTB40 CHAMP1 GATA2 BCLAF1 SMAD5 FAM160A2 TRIM34 UBQLNL HBE1 OR52D1
GH11F005815 1.3 FANTOM5 Ensembl ENCODE 3 +195.9 195910 0.5 HDAC1 CBX3 EBF1 CHAMP1 ZNF316 CBX5 NFE2 TRIM24 MAFK MTA2 OR52N3P TRIM22 TRIM34 TRIM5 FAM160A2 OR52N5 OR52N2 OR52E6
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TRIM34 on UCSC Golden Path with GeneCards custom track

Genomic Location for TRIM34 Gene

Chromosome:
11
Start:
5,619,764 bp from pter
End:
5,644,398 bp from pter
Size:
24,635 bases
Orientation:
Plus strand

Genomic View for TRIM34 Gene

Genes around TRIM34 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRIM34 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRIM34 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRIM34 Gene

Proteins for TRIM34 Gene

  • Protein details for TRIM34 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BYJ4-TRI34_HUMAN
    Recommended name:
    Tripartite motif-containing protein 34
    Protein Accession:
    Q9BYJ4
    Secondary Accessions:
    • D3DQS7
    • Q9C016
    • Q9HCR0
    • Q9HCR1
    • Q9HCR2

    Protein attributes for TRIM34 Gene

    Size:
    488 amino acids
    Molecular mass:
    56864 Da
    Quaternary structure:
    • Homotrimer. Interacts (via the B30.2/SPRY domain) with HIV-1 capsid complexes (PubMed:17156811). Interacts (via B-box and SPRY domain) with TRIM5 (PubMed:21680743, PubMed:17156811).
    SequenceCaution:
    • Sequence=AAG53517.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=BAB17050.1; Type=Miscellaneous discrepancy; Note=The in vivo relevance of this transcript of the TRIM6 (AC Q9C030) and TRIM34 genes creating a chimeric protein of 842 residues is uncertain.; Evidence={ECO:0000305};

    Three dimensional structures from OCA and Proteopedia for TRIM34 Gene

    Alternative splice isoforms for TRIM34 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for TRIM34 Gene

Selected DME Specific Peptides for TRIM34 Gene

Q9BYJ4:
  • CPICLEL
  • ICWLCERSQEHRGH
  • RVGVFLDYEA
  • AEKLEAD
  • GYWVIGL

Post-translational modifications for TRIM34 Gene

  • Ubiquitination at Lys 173
  • Modification sites at PhosphoSitePlus

Other Protein References for TRIM34 Gene

Domains & Families for TRIM34 Gene

Gene Families for TRIM34 Gene

Suggested Antigen Peptide Sequences for TRIM34 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9BYJ4

UniProtKB/Swiss-Prot:

TRI34_HUMAN :
  • Contains 1 B30.2/SPRY domain.
  • Belongs to the TRIM/RBCC family.
  • Contains 1 B box-type zinc finger.
Domain:
  • Contains 1 B30.2/SPRY domain.
Family:
  • Belongs to the TRIM/RBCC family.
Similarity:
  • Contains 1 B box-type zinc finger.
  • Contains 1 RING-type zinc finger.
genes like me logo Genes that share domains with TRIM34: view

Function for TRIM34 Gene

Molecular function for TRIM34 Gene

UniProtKB/Swiss-Prot Function:
May function as antiviral protein and may contribute to the defense against retroviral infections.
UniProtKB/Swiss-Prot Induction:
Isoform 1 is up-regulated by interferons.

Enzyme Numbers (IUBMB) for TRIM34 Gene

Gene Ontology (GO) - Molecular Function for TRIM34 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003674 molecular_function ND --
GO:0008270 zinc ion binding IEA --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with TRIM34: view
genes like me logo Genes that share phenotypes with TRIM34: view

Animal Model Products

  • Taconic Biosciences Mouse Models for TRIM34

Inhibitory RNA Products

Flow Cytometry Products

No data available for Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRIM34 Gene

Localization for TRIM34 Gene

Subcellular locations from UniProtKB/Swiss-Prot for TRIM34 Gene

Cytoplasm.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for TRIM34 gene
Compartment Confidence
cytosol 4

Gene Ontology (GO) - Cellular Components for TRIM34 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular IEA --
GO:0005737 cytoplasm IEA,IDA 17156811
GO:0005829 cytosol TAS --
genes like me logo Genes that share ontologies with TRIM34: view

Pathways & Interactions for TRIM34 Gene

genes like me logo Genes that share pathways with TRIM34: view

Pathways by source for TRIM34 Gene

Gene Ontology (GO) - Biological Process for TRIM34 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0051091 positive regulation of sequence-specific DNA binding transcription factor activity IDA 23077300
GO:0051607 defense response to virus IEA --
GO:0060333 interferon-gamma-mediated signaling pathway TAS --
GO:0070206 protein trimerization IDA 17156811
genes like me logo Genes that share ontologies with TRIM34: view

No data available for SIGNOR curated interactions for TRIM34 Gene

Transcripts for TRIM34 Gene

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRIM34 Gene

No ASD Table

Relevant External Links for TRIM34 Gene

GeneLoc Exon Structure for
TRIM34
ECgene alternative splicing isoforms for
TRIM34

Expression for TRIM34 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TRIM34 Gene

Protein differential expression in normal tissues from HIPED for TRIM34 Gene

This gene is overexpressed in Fetal testis (36.4) and Fetal heart (21.9).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for TRIM34 Gene



Protein tissue co-expression partners for TRIM34 Gene

NURSA nuclear receptor signaling pathways regulating expression of TRIM34 Gene:

TRIM34

mRNA Expression by UniProt/SwissProt for TRIM34 Gene:

Q9BYJ4-TRI34_HUMAN
Tissue specificity: Isoform 1 is the most abundant form. It is highly expressed in the placenta, spleen, colon and peripheral blood leukocytes.
genes like me logo Genes that share expression patterns with TRIM34: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA differential expression in normal tissues for TRIM34 Gene

Orthologs for TRIM34 Gene

This gene was present in the common ancestor of chordates.

Orthologs for TRIM34 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TRIM34 34 35
  • 99.52 (n)
cow
(Bos Taurus)
Mammalia -- 35
  • 42 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Trim34a 35
  • 28 (a)
ManyToMany
chicken
(Gallus gallus)
Aves -- 35
  • 14 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 35
  • 14 (a)
OneToMany
Species where no ortholog for TRIM34 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for TRIM34 Gene

ENSEMBL:
Gene Tree for TRIM34 (if available)
TreeFam:
Gene Tree for TRIM34 (if available)

Paralogs for TRIM34 Gene

(18) SIMAP similar genes for TRIM34 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with TRIM34: view

Variants for TRIM34 Gene

Sequence variations from dbSNP and Humsavar for TRIM34 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs193920907 Uncertain significance 5,632,327(+) AAGCA(A/G)TGCAA intron-variant, reference, missense, utr-variant-5-prime
rs10400260 -- 5,621,745(+) AATGC(A/C)TATCT intron-variant
rs10400261 -- 5,621,782(+) AGAAA(C/G)TCAAA intron-variant
rs10400271 -- 5,618,643(+) AATTA(A/G)CCTAG intron-variant, upstream-variant-2KB
rs10400272 -- 5,618,792(+) CTATG(A/G)GAGGA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for TRIM34 Gene

Variant ID Type Subtype PubMed ID
esv3625239 CNV loss 21293372
esv3625241 CNV loss 21293372
esv3891920 CNV loss 25118596
nsv1041568 CNV loss 25217958
nsv1046068 CNV gain 25217958
nsv1048455 CNV gain 25217958
nsv1048608 CNV gain 25217958
nsv1053414 CNV gain 25217958
nsv1122581 CNV deletion 24896259
nsv553241 CNV gain 21841781
nsv553273 CNV gain 21841781

Variation tolerance for TRIM34 Gene

Residual Variation Intolerance Score: 74.2% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for TRIM34 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRIM34

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TRIM34 Gene

Disorders for TRIM34 Gene

Relevant External Links for TRIM34

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TRIM34

No disorders were found for TRIM34 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TRIM34 Gene

Publications for TRIM34 Gene

  1. Unique features of TRIM5alpha among closely related human TRIM family members. (PMID: 17156811) Li X. … Sodroski J. (Virology 2007) 3 4 22 64
  2. Molecular cloning of ring finger protein 21 (RNF21)/interferon- responsive finger protein (ifp1), which possesses two RING-B box- coiled coil domains in tandem. (PMID: 11013086) Orimo A. … Muramatsu M. (Genomics 2000) 3 4 22 64
  3. Determinants of the higher order association of the restriction factor TRIM5alpha and other tripartite motif (TRIM) proteins. (PMID: 21680743) Li X. … Sodroski J. (J. Biol. Chem. 2011) 3 4 64
  4. Functional replacement of the RING, B-box 2, and coiled-coil domains of tripartite motif 5alpha (TRIM5alpha) by heterologous TRIM domains. (PMID: 16775307) Li X. … Sodroski J. (J. Virol. 2006) 3 22 64
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64

Products for TRIM34 Gene

Sources for TRIM34 Gene

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