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Aliases for TRIM31-AS1 Gene

Subcategory (RNA class) for TRIM31-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TRIM31-AS1 Gene

  • TRIM31 Antisense RNA 1 2 3 5
  • TRIM31 Antisense RNA 1 (Non-Protein Coding) 2 3
  • XXbac-BPG250I8.13 3

External Ids for TRIM31-AS1 Gene

Previous GeneCards Identifiers for TRIM31-AS1 Gene

  • GC06P030076
  • GC06P030089
  • GC00U934725
  • GC06P030273
  • GC06P030305
  • GC06P030363
  • GC06P030515

Summaries for TRIM31-AS1 Gene

GeneCards Summary for TRIM31-AS1 Gene

TRIM31-AS1 (TRIM31 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRIM31-AS1 Gene

Genomics for TRIM31-AS1 Gene

Regulatory Elements for TRIM31-AS1 Gene

Enhancers for TRIM31-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06F030100 1.7 FANTOM5 Ensembl ENCODE 20 -3.2 -3160 3.9 MLX WRNIP1 ARID4B DMAP1 SLC30A9 ZNF143 ZNF263 SP3 SP5 ZHX2 HLA-K RPL23AP1 TRIM31-AS1 HCG4 MICD ZNRD1ASP ETF1P1 PPP1R10 HCG18 PAIP1P1
GH06F030129 1.3 Ensembl ENCODE 13.1 +25.7 25668 3.1 HDGF PKNOX1 MLX SIN3A ARID4B FEZF1 ZNF48 ZNF2 ZNF143 ZMIZ1 TRIM40 TRIM31 TRIM31-AS1 TRIM10 TRIM15 HLA-A HCG18 ENSG00000252228 GC06M030229
GH06F030153 1.3 Ensembl ENCODE 11.9 +50.0 50024 4.1 PKNOX1 ATF1 ARID4B FEZF1 ZNF2 GLIS2 ZNF143 KLF7 FOS ZNF263 TRIM31 HLA-U TRIM40 HCG18 HCG4P7 GTF2H4 ETF1P1 PPP1R10 HLA-A PAIP1P1
GH06F030065 1.2 ENCODE 11.5 -38.4 -38435 3.0 HDGF PKNOX1 ARNT CREB3L1 ZFP64 ARID4B SIN3A DMAP1 YBX1 ZNF2 HCG4P3 PPP1R10 IFITM4P HLA-A TRIM26 PAIP1P1 RPL7P4 HCG4P7 HLA-P UBQLN1P1
GH06F030133 1.1 ENCODE 12.5 +30.4 30372 4.2 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ZNF143 ZNF263 PAF1 TRIM31 HLA-K HLA-A TRIM31-AS1 TRIM10 TRIM15 LINC00243 TRIM40 RPL23AP1 HLA-G
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TRIM31-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for TRIM31-AS1 Gene

Chromosome:
6
Start:
30,105,240 bp from pter
End:
30,114,724 bp from pter
Size:
9,485 bases
Orientation:
Plus strand

Genomic View for TRIM31-AS1 Gene

Genes around TRIM31-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRIM31-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRIM31-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for TRIM31-AS1 Gene

Post-translational modifications for TRIM31-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRIM31-AS1 Gene

Domains & Families for TRIM31-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRIM31-AS1 Gene

Function for TRIM31-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRIM31-AS1 Gene

Localization for TRIM31-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TRIM31-AS1 Gene

Pathways & Interactions for TRIM31-AS1 Gene

SuperPathways for TRIM31-AS1 Gene

No Data Available

Interacting Proteins for TRIM31-AS1 Gene

Gene Ontology (GO) - Biological Process for TRIM31-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRIM31-AS1 Gene

Transcripts for TRIM31-AS1 Gene

mRNA/cDNA for TRIM31-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TRIM31-AS1 Gene

No ASD Table

Relevant External Links for TRIM31-AS1 Gene

GeneLoc Exon Structure for
TRIM31-AS1
ECgene alternative splicing isoforms for
TRIM31-AS1

Expression for TRIM31-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TRIM31-AS1 Gene

genes like me logo Genes that share expression patterns with TRIM31-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for TRIM31-AS1 Gene

Orthologs for TRIM31-AS1 Gene

Evolution for TRIM31-AS1 Gene

ENSEMBL:
Gene Tree for TRIM31-AS1 (if available)
TreeFam:
Gene Tree for TRIM31-AS1 (if available)

No data available for Orthologs for TRIM31-AS1 Gene

Paralogs for TRIM31-AS1 Gene

No data available for Paralogs for TRIM31-AS1 Gene

Variants for TRIM31-AS1 Gene

Sequence variations from dbSNP and Humsavar for TRIM31-AS1 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs10714364 -- 30,109,332(+) GGGAG(-/C)CCTGC intron-variant
rs10947053 -- 30,109,807(+) tagtg(C/T)gccaa intron-variant
rs111260969 -- 30,112,534(+) CCTCT(C/T)TCCTT intron-variant, nc-transcript-variant, reference, missense
rs111288156 -- 30,107,848(+) GGCAG(A/C)TAAAT intron-variant, downstream-variant-500B
rs111537560 -- 30,105,031(+) AACCA(C/T)ATGCC intron-variant, upstream-variant-2KB

Relevant External Links for TRIM31-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRIM31-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRIM31-AS1 Gene

Disorders for TRIM31-AS1 Gene

Relevant External Links for TRIM31-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TRIM31-AS1

No disorders were found for TRIM31-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TRIM31-AS1 Gene

Publications for TRIM31-AS1 Gene

No publications were found for TRIM31-AS1 Gene.

Products for TRIM31-AS1 Gene

Sources for TRIM31-AS1 Gene

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