Free for academic non-profit institutions. Other users need a Commercial license

Aliases for TRIM31-AS1 Gene

Subcategory (RNA class) for TRIM31-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TRIM31-AS1 Gene

  • TRIM31 Antisense RNA 1 2 3 5
  • TRIM31 Antisense RNA 1 (Non-Protein Coding) 2 3
  • XXbac-BPG250I8.13 3

External Ids for TRIM31-AS1 Gene

Previous GeneCards Identifiers for TRIM31-AS1 Gene

  • GC06P030076
  • GC06P030089
  • GC00U934725
  • GC06P030273
  • GC06P030305
  • GC06P030363
  • GC06P030515
  • GC06P030718

Summaries for TRIM31-AS1 Gene

GeneCards Summary for TRIM31-AS1 Gene

TRIM31-AS1 (TRIM31 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRIM31-AS1 Gene

Genomics for TRIM31-AS1 Gene

Regulatory Elements for TRIM31-AS1 Gene

Enhancers for TRIM31-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06G030100 1.7 FANTOM5 Ensembl ENCODE 20 -3.2 -3160 3.9 FOXA2 MLX ARNT AGO1 WRNIP1 ARID4B SIN3A DMAP1 SLC30A9 ZNF143 HLA-K RPL23AP1 TRIM31-AS1 HCG4 MICD ZNRD1ASP ETF1P1 PPP1R10 HCG18 PAIP1P1
GH06G030129 1.3 Ensembl ENCODE 13.1 +25.7 25668 3.1 HDGF PKNOX1 MLX ARNT SIN3A ARID4B FEZF1 ZNF2 ZNF143 DEK TRIM40 TRIM31 TRIM31-AS1 TRIM10 TRIM15 HLA-A HCG18 ENSG00000252228 GC06M030273
GH06G030153 1.3 Ensembl ENCODE 11.9 +50.2 50181 3.8 PKNOX1 ATF1 ARID4B FEZF1 ZNF2 GLIS2 ZNF143 KLF7 FOS ZNF263 HLA-U TRIM31 HCG18 HCG4P7 ETF1P1 PPP1R10 HLA-A PAIP1P1 TRIM31-AS1 GTF2H4
GH06G030065 1.2 ENCODE 11.5 -38.4 -38435 3.0 CREB3L1 ZFP64 DMAP1 YBX1 YY1 SLC30A9 ZNF143 ZNF263 SP3 NFYC HCG4P3 PPP1R10 HLA-A TRIM26 PAIP1P1 IFITM4P ETF1P1 ZNRD1 HCG18 GTF2H4
GH06G030133 1.1 ENCODE 12.5 +30.4 30372 4.2 FOXA2 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ZNF143 ZNF263 TRIM31 HLA-K HLA-A TRIM31-AS1 TRIM10 TRIM15 HCG17 LINC00243 TRIM40 RPL23AP1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TRIM31-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for TRIM31-AS1 Gene

Chromosome:
6
Start:
30,105,240 bp from pter
End:
30,114,724 bp from pter
Size:
9,485 bases
Orientation:
Plus strand

Genomic View for TRIM31-AS1 Gene

Genes around TRIM31-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRIM31-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRIM31-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for TRIM31-AS1 Gene

Post-translational modifications for TRIM31-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRIM31-AS1 Gene

Domains & Families for TRIM31-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRIM31-AS1 Gene

Function for TRIM31-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRIM31-AS1 Gene

Localization for TRIM31-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TRIM31-AS1 Gene

Pathways & Interactions for TRIM31-AS1 Gene

SuperPathways for TRIM31-AS1 Gene

No Data Available

Interacting Proteins for TRIM31-AS1 Gene

Gene Ontology (GO) - Biological Process for TRIM31-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRIM31-AS1 Gene

Drugs & Compounds for TRIM31-AS1 Gene

No Compound Related Data Available

Transcripts for TRIM31-AS1 Gene

mRNA/cDNA for TRIM31-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TRIM31-AS1 Gene

No ASD Table

Relevant External Links for TRIM31-AS1 Gene

GeneLoc Exon Structure for
TRIM31-AS1
ECgene alternative splicing isoforms for
TRIM31-AS1

Expression for TRIM31-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TRIM31-AS1 Gene

genes like me logo Genes that share expression patterns with TRIM31-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRIM31-AS1 Gene

Orthologs for TRIM31-AS1 Gene

Evolution for TRIM31-AS1 Gene

ENSEMBL:
Gene Tree for TRIM31-AS1 (if available)
TreeFam:
Gene Tree for TRIM31-AS1 (if available)

No data available for Orthologs for TRIM31-AS1 Gene

Paralogs for TRIM31-AS1 Gene

No data available for Paralogs for TRIM31-AS1 Gene

Variants for TRIM31-AS1 Gene

Sequence variations from dbSNP and Humsavar for TRIM31-AS1 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1000056229 -- 30,114,386(+) TGAAG(A/G)CATTT intron-variant, upstream-variant-2KB
rs1000968488 -- 30,109,589(+) TAAAT(C/T)AAAAA intron-variant
rs1002050978 -- 30,103,292(+) GGGCG(G/T)GTGGC intron-variant, nc-transcript-variant, upstream-variant-2KB, utr-variant-3-prime
rs1002200034 -- 30,108,882(+) TTCCC(C/T)GGCTG intron-variant
rs1002286891 -- 30,109,682(+) TCGAG(A/T)CCATC intron-variant

Relevant External Links for TRIM31-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRIM31-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRIM31-AS1 Gene

Disorders for TRIM31-AS1 Gene

Relevant External Links for TRIM31-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TRIM31-AS1

No disorders were found for TRIM31-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TRIM31-AS1 Gene

Publications for TRIM31-AS1 Gene

No publications were found for TRIM31-AS1 Gene.

Products for TRIM31-AS1 Gene

Sources for TRIM31-AS1 Gene

Content
Loading form....