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Aliases for TRIM26 Gene

Aliases for TRIM26 Gene

  • Tripartite Motif Containing 26 2 3 5
  • Zinc Finger Protein 173 3 4
  • RING Finger Protein 95 3 4
  • Acid Finger Protein 3 4
  • ZNF173 3 4
  • RNF95 3 4
  • AFP 3 4
  • Widely Expressed Acid Zinc Finger Protein 3
  • Tripartite Motif-Containing Protein 26 3
  • Tripartite Motif-Containing 26 2

External Ids for TRIM26 Gene

Previous HGNC Symbols for TRIM26 Gene

  • ZNF173

Previous GeneCards Identifiers for TRIM26 Gene

  • GC06M030236
  • GC06M029922
  • GC06M030258
  • GC06M030260
  • GC06M030152
  • GC06M029951

Summaries for TRIM26 Gene

Entrez Gene Summary for TRIM26 Gene

  • The protein encoded by this gene is a member of the tripartite motif (TRIM) family. The TRIM motif includes three zinc-binding domains, a RING, a B-box type 1 and a B-box type 2, and a coiled-coil region. The protein localizes to cytoplasmic bodies. Although the function of the protein is unknown, the RING domain suggests that the protein may have DNA-binding activity. The gene localizes to the major histocompatibility complex (MHC) class I region on chromosome 6. Alternatively spliced transcript variants encoding the same protein have been found for this gene. [provided by RefSeq, Jun 2011]

GeneCards Summary for TRIM26 Gene

TRIM26 (Tripartite Motif Containing 26) is a Protein Coding gene. Diseases associated with TRIM26 include Neural Tube Defects. Among its related pathways are Interferon gamma signaling and Immune System. An important paralog of this gene is TRIM10.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRIM26 Gene

Genomics for TRIM26 Gene

Regulatory Elements for TRIM26 Gene

Enhancers for TRIM26 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06F030488 1.1 ENCODE 25.3 -277.4 -277386 4.2 HDGF PKNOX1 ARNT CREB3L1 WRNIP1 ARID4B SIN3A DMAP1 ZNF2 YY1 PPP1R10 TRIM26 PAIP1P1 DHX16 ETF1P1 ABCF1 RPL3P2 GNL1 TCF19 HLA-K
GH06F030875 1.3 FANTOM5 ENCODE 25.3 -663.3 -663326 3.5 HDGF PKNOX1 ARNT CREB3L1 SIN3A ARID4B ZNF2 YY1 ZNF143 KLF13 VARS2 PPP1R10 GTF2H4 ABCF1 TRIM26 DDX39B LSM2 LY6G5B PAIP1P1 VARS
GH06F030065 0.6 ENCODE 22.4 +146.7 146689 3.0 HDGF PKNOX1 ARNT CREB3L1 ZFP64 ARID4B SIN3A DMAP1 YBX1 ZNF2 HCG4P3 PPP1R10 IFITM4P HLA-A TRIM26 PAIP1P1 RPL7P4 HCG4P7 HLA-P UBQLN1P1
GH06F030907 1 ENCODE 22.3 -695.0 -694964 2.2 CREB3L1 YBX1 DMAP1 YY1 ZNF416 ZNF143 ZNF548 ZNF263 SP3 NFYC HCG18 GTF2H4 DDX39B LY6G5B DHX16 ABCF1 VARS2 LSM2 PPP1R10 NFKBIL1
GH06F030715 1 ENCODE 21.6 -506.0 -506033 7.7 MLX CREB3L1 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF548 ZNF263 DDX39B LY6G5B PPP1R10 DHX16 MICA HLA-F-AS1 PAIP1P1 HCG9P5 HLA-K MICE
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around TRIM26 on UCSC Golden Path with GeneCards custom track

Promoters for TRIM26 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000487623 -6 3001 PKNOX1 MLX ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143 FOS ZNF263

Genomic Location for TRIM26 Gene

Chromosome:
6
Start:
30,184,453 bp from pter
End:
30,213,494 bp from pter
Size:
29,042 bases
Orientation:
Minus strand

Genomic View for TRIM26 Gene

Genes around TRIM26 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRIM26 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRIM26 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for TRIM26 Gene

  • Protein details for TRIM26 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q12899-TRI26_HUMAN
    Recommended name:
    Tripartite motif-containing protein 26
    Protein Accession:
    Q12899
    Secondary Accessions:
    • A6NG96
    • Q5SRL2

    Protein attributes for TRIM26 Gene

    Size:
    539 amino acids
    Molecular mass:
    62166 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TRIM26 Gene

Post-translational modifications for TRIM26 Gene

  • Ubiquitination at Lys 245 and Lys 449
  • Modification sites at PhosphoSitePlus

No data available for DME Specific Peptides for TRIM26 Gene

Domains & Families for TRIM26 Gene

Gene Families for TRIM26 Gene

Suggested Antigen Peptide Sequences for TRIM26 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q12899

UniProtKB/Swiss-Prot:

TRI26_HUMAN :
  • Contains 1 B30.2/SPRY domain.
  • Belongs to the TRIM/RBCC family.
  • Contains 1 B box-type zinc finger.
Domain:
  • Contains 1 B30.2/SPRY domain.
Family:
  • Belongs to the TRIM/RBCC family.
Similarity:
  • Contains 1 B box-type zinc finger.
  • Contains 1 RING-type zinc finger.
genes like me logo Genes that share domains with TRIM26: view

Function for TRIM26 Gene

Gene Ontology (GO) - Molecular Function for TRIM26 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding NAS 8530076
GO:0005515 protein binding IPI 21516116
GO:0008270 zinc ion binding IEA --
GO:0046872 metal ion binding IEA,NAS 8530076
genes like me logo Genes that share ontologies with TRIM26: view
genes like me logo Genes that share phenotypes with TRIM26: view

Animal Model Products

miRNA for TRIM26 Gene

miRTarBase miRNAs that target TRIM26

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for TRIM26 Gene

Localization for TRIM26 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for TRIM26 Gene COMPARTMENTS Subcellular localization image for TRIM26 gene
Compartment Confidence
nucleus 3
cytosol 2
cytoskeleton 1

Gene Ontology (GO) - Cellular Components for TRIM26 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005575 cellular_component ND --
GO:0005622 intracellular IEA --
GO:0005737 cytoplasm IEA --
GO:0005829 cytosol TAS --
genes like me logo Genes that share ontologies with TRIM26: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for TRIM26 Gene

Pathways & Interactions for TRIM26 Gene

genes like me logo Genes that share pathways with TRIM26: view

Pathways by source for TRIM26 Gene

Gene Ontology (GO) - Biological Process for TRIM26 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0045087 innate immune response IDA 18248090
GO:0046597 negative regulation of viral entry into host cell IDA 18248090
GO:0051091 positive regulation of sequence-specific DNA binding transcription factor activity IDA 23077300
GO:0060333 interferon-gamma-mediated signaling pathway TAS --
GO:1902187 negative regulation of viral release from host cell IDA 18248090
genes like me logo Genes that share ontologies with TRIM26: view

No data available for SIGNOR curated interactions for TRIM26 Gene

Transcripts for TRIM26 Gene

Unigene Clusters for TRIM26 Gene

Tripartite motif containing 26:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRIM26 Gene

No ASD Table

Relevant External Links for TRIM26 Gene

GeneLoc Exon Structure for
TRIM26
ECgene alternative splicing isoforms for
TRIM26

Expression for TRIM26 Gene

mRNA expression in normal human tissues for TRIM26 Gene

Protein differential expression in normal tissues from HIPED for TRIM26 Gene

This gene is overexpressed in Pancreas (8.6), NK cells (7.1), Peripheral blood mononuclear cells (6.6), and CD8 Tcells (6.4).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for TRIM26 Gene



Protein tissue co-expression partners for TRIM26 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of TRIM26 Gene:

TRIM26

SOURCE GeneReport for Unigene cluster for TRIM26 Gene:

Hs.731863
genes like me logo Genes that share expression patterns with TRIM26: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for TRIM26 Gene

Orthologs for TRIM26 Gene

This gene was present in the common ancestor of mammals.

Orthologs for TRIM26 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TRIM26 34 35
  • 99.26 (n)
cow
(Bos Taurus)
Mammalia TRIM26 34 35
  • 92.15 (n)
mouse
(Mus musculus)
Mammalia Trim26 34 16 35
  • 85.28 (n)
dog
(Canis familiaris)
Mammalia TRIM26 34 35
  • 84.91 (n)
rat
(Rattus norvegicus)
Mammalia Trim26 34
  • 84.29 (n)
oppossum
(Monodelphis domestica)
Mammalia TRIM26 35
  • 74 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia -- 35
  • 42 (a)
OneToMany
-- 35
  • 42 (a)
OneToMany
Species where no ortholog for TRIM26 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for TRIM26 Gene

ENSEMBL:
Gene Tree for TRIM26 (if available)
TreeFam:
Gene Tree for TRIM26 (if available)

Paralogs for TRIM26 Gene

Variants for TRIM26 Gene

Sequence variations from dbSNP and Humsavar for TRIM26 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1042338 -- 30,185,012(-) TGACC(A/G)GGTTC utr-variant-3-prime
rs1042398 -- 30,184,668(-) CGGCT(C/T)TGGGC utr-variant-3-prime
rs1060914 -- 30,204,541(-) AACCT(A/C)ATTTC intron-variant
rs1060916 -- 30,204,145(-) AAGGG(A/G)AGGGA intron-variant
rs10654563 -- 30,203,047(+) CTTTC(-/T)TTTTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TRIM26 Gene

Variant ID Type Subtype PubMed ID
esv2731777 CNV deletion 23290073
esv3411275 CNV duplication 20981092
nsv1074389 CNV deletion 25765185
nsv1122126 CNV deletion 24896259
nsv1144137 CNV deletion 24896259
nsv601264 CNV loss 21841781

Variation tolerance for TRIM26 Gene

Residual Variation Intolerance Score: 47.6% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 4.27; 62.55% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for TRIM26 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRIM26

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TRIM26 Gene

Disorders for TRIM26 Gene

MalaCards: The human disease database

(1) MalaCards diseases for TRIM26 Gene - From: DISEASES and GeneCards

Disorder Aliases PubMed IDs
neural tube defects
  • spina bifida
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for TRIM26

Genetic Association Database (GAD)
TRIM26
Human Genome Epidemiology (HuGE) Navigator
TRIM26
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TRIM26
genes like me logo Genes that share disorders with TRIM26: view

No data available for UniProtKB/Swiss-Prot and Genatlas for TRIM26 Gene

Publications for TRIM26 Gene

  1. Cloning of a new 'finger' protein gene (ZNF173) within the class I region of the human MHC. (PMID: 8530076) Chu T.W. … Gruen J.R. (Genomics 1995) 2 3 4 22 64
  2. Genome-wide association study identifies five new schizophrenia loci. (PMID: 21926974) (Nat. Genet. 2011) 3 46 64
  3. A major histocompatibility Class I locus contributes to multiple sclerosis susceptibility independently from HLA-DRB1*15:01. (PMID: 20593013) Cree B.A. … . (PLoS ONE 2010) 3 46 64
  4. High-density SNP screening of the major histocompatibility complex in systemic lupus erythematosus demonstrates strong evidence for independent susceptibility regions. (PMID: 19851445) Barcellos L.F. … Criswell L.A. (PLoS Genet. 2009) 3 46 64
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64

Products for TRIM26 Gene

Sources for TRIM26 Gene

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