Free for academic non-profit institutions. Other users need a Commercial license

Aliases for TRIM15 Gene

Aliases for TRIM15 Gene

  • Tripartite Motif Containing 15 2 3 5
  • Zinc Finger Protein 178 2 3 4
  • Zinc Finger Protein B7 3 4
  • RING Finger Protein 93 3 4
  • ZNF178 3 4
  • RNF93 3 4
  • ZNFB7 3 4
  • Tripartite Motif-Containing Protein 15 3
  • Tripartite Motif-Containing 15 2

External Ids for TRIM15 Gene

Previous HGNC Symbols for TRIM15 Gene

  • ZNF178

Previous GeneCards Identifiers for TRIM15 Gene

  • GC06P030215
  • GC06P029901
  • GC06P030237
  • GC06P030238
  • GC06P030130
  • GC06P029929
  • GC06P030282
  • GC06P030318
  • GC06P030368
  • GC06P030518

Summaries for TRIM15 Gene

Entrez Gene Summary for TRIM15 Gene

  • The protein encoded by this gene is a member of the tripartite motif (TRIM) family. The TRIM motif includes three zinc-binding domains, a RING, a B-box type 1 and a B-box type 2, and a coiled-coil region. The protein localizes to the cytoplasm. Alternatively spliced transcript variants have been described, but their biological validity has not been determined. [provided by RefSeq, Jul 2008]

GeneCards Summary for TRIM15 Gene

TRIM15 (Tripartite Motif Containing 15) is a Protein Coding gene. An important paralog of this gene is TRIM10.

Gene Wiki entry for TRIM15 Gene

No data available for UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRIM15 Gene

Genomics for TRIM15 Gene

Regulatory Elements for TRIM15 Gene

Enhancers for TRIM15 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06F030129 0.8 Ensembl ENCODE 12.1 -32.3 -32299 3.1 HDGF PKNOX1 MLX SIN3A ARID4B FEZF1 ZNF48 ZNF2 ZNF143 ZMIZ1 TRIM40 TRIM31 TRIM31-AS1 TRIM10 TRIM15 HLA-A HCG18 ENSG00000252228 GC06M030229
GH06F030133 0.4 ENCODE 12 -27.6 -27595 4.2 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ZNF143 ZNF263 PAF1 TRIM31 HLA-K HLA-A TRIM31-AS1 TRIM10 TRIM15 LINC00243 TRIM40 RPL23AP1 HLA-G
GH06F030153 1 Ensembl ENCODE 0.4 -7.9 -7943 4.1 PKNOX1 ATF1 ARID4B FEZF1 ZNF2 GLIS2 ZNF143 KLF7 FOS ZNF263 TRIM31 HLA-U TRIM40 HCG18 HCG4P7 GTF2H4 ETF1P1 PPP1R10 HLA-A PAIP1P1
GH06F030151 0.4 Ensembl 0.4 -11.5 -11506 0.6 CBX3 ETV1 INSM2 ZNF2 ZBTB40 HIC1 ELK1 TRIM24 ZSCAN29 ETV6 TRIM31 TRIM40 TRIM31-AS1 ABCF1 TRIM15
GH06F030143 0.4 ENCODE 0.3 -18.7 -18674 1.8 ATF1 FEZF1 BMI1 CEBPG ZNF644 RARA SCRT2 HNF4G ZNF600 NR2F6 HLA-U TRIM40 TRIM31 ZFP57 HCG4P3 IFITM4P TRIM15
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around TRIM15 on UCSC Golden Path with GeneCards custom track

Genomic Location for TRIM15 Gene

Chromosome:
6
Start:
30,163,206 bp from pter
End:
30,172,696 bp from pter
Size:
9,491 bases
Orientation:
Plus strand

Genomic View for TRIM15 Gene

Genes around TRIM15 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRIM15 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRIM15 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for TRIM15 Gene

  • Protein details for TRIM15 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9C019-TRI15_HUMAN
    Recommended name:
    Tripartite motif-containing protein 15
    Protein Accession:
    Q9C019
    Secondary Accessions:
    • A2BEC9
    • O95604
    • Q8IUX9
    • Q9C018

    Protein attributes for TRIM15 Gene

    Size:
    465 amino acids
    Molecular mass:
    52113 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for TRIM15 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for TRIM15 Gene

Post-translational modifications for TRIM15 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for TRIM15 Gene

No data available for DME Specific Peptides for TRIM15 Gene

Domains & Families for TRIM15 Gene

Gene Families for TRIM15 Gene

Graphical View of Domain Structure for InterPro Entry

Q9C019

UniProtKB/Swiss-Prot:

TRI15_HUMAN :
  • Contains 1 B30.2/SPRY domain.
  • Belongs to the TRIM/RBCC family.
  • Contains 1 B box-type zinc finger.
Domain:
  • Contains 1 B30.2/SPRY domain.
Family:
  • Belongs to the TRIM/RBCC family.
Similarity:
  • Contains 1 B box-type zinc finger.
  • Contains 1 RING-type zinc finger.
genes like me logo Genes that share domains with TRIM15: view

Function for TRIM15 Gene

Gene Ontology (GO) - Molecular Function for TRIM15 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
GO:0008270 zinc ion binding IEA --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with TRIM15: view
genes like me logo Genes that share phenotypes with TRIM15: view

Animal Model Products

Inhibitory RNA Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRIM15 Gene

Localization for TRIM15 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for TRIM15 Gene COMPARTMENTS Subcellular localization image for TRIM15 gene
Compartment Confidence
nucleus 3
cytosol 2

Gene Ontology (GO) - Cellular Components for TRIM15 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular IEA --
genes like me logo Genes that share ontologies with TRIM15: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for TRIM15 Gene

Pathways & Interactions for TRIM15 Gene

SuperPathways for TRIM15 Gene

No Data Available

Interacting Proteins for TRIM15 Gene

Gene Ontology (GO) - Biological Process for TRIM15 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007500 mesodermal cell fate determination TAS 10207104
GO:0032481 positive regulation of type I interferon production IMP 23077300
GO:0045087 innate immune response IMP 18248090
GO:0051091 positive regulation of sequence-specific DNA binding transcription factor activity IMP 23077300
GO:0051092 positive regulation of NF-kappaB transcription factor activity IDA 23077300
genes like me logo Genes that share ontologies with TRIM15: view

No data available for Pathways by source and SIGNOR curated interactions for TRIM15 Gene

Transcripts for TRIM15 Gene

mRNA/cDNA for TRIM15 Gene

(4) REFSEQ mRNAs :
(6) Additional mRNA sequences :
(4) Selected AceView cDNA sequences:
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TRIM15 Gene

Tripartite motif containing 15:
Representative Sequences:

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRIM15 Gene

No ASD Table

Relevant External Links for TRIM15 Gene

GeneLoc Exon Structure for
TRIM15
ECgene alternative splicing isoforms for
TRIM15

Expression for TRIM15 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TRIM15 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for TRIM15 Gene

This gene is overexpressed in Colon - Transverse (x18.0), Liver (x16.0), Small Intestine - Terminal Ileum (x10.5), and Kidney - Cortex (x5.6).

Protein differential expression in normal tissues from HIPED for TRIM15 Gene

This gene is overexpressed in Oral epithelium (28.4), Kidney (25.3), and Ovary (15.3).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for TRIM15 Gene



Protein tissue co-expression partners for TRIM15 Gene

NURSA nuclear receptor signaling pathways regulating expression of TRIM15 Gene:

TRIM15

SOURCE GeneReport for Unigene cluster for TRIM15 Gene:

Hs.591789
genes like me logo Genes that share expression patterns with TRIM15: view

Primer Products

No data available for mRNA Expression by UniProt/SwissProt for TRIM15 Gene

Orthologs for TRIM15 Gene

This gene was present in the common ancestor of mammals.

Orthologs for TRIM15 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TRIM15 34 35
  • 99.07 (n)
cow
(Bos Taurus)
Mammalia TRIM15 34 35
  • 86.98 (n)
rat
(Rattus norvegicus)
Mammalia LOC100910806 34
  • 79.6 (n)
mouse
(Mus musculus)
Mammalia Trim15 34 16 35
  • 78.75 (n)
oppossum
(Monodelphis domestica)
Mammalia TRIM15 35
  • 63 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia TRIM15 35
  • 53 (a)
OneToOne
Species where no ortholog for TRIM15 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for TRIM15 Gene

ENSEMBL:
Gene Tree for TRIM15 (if available)
TreeFam:
Gene Tree for TRIM15 (if available)

Paralogs for TRIM15 Gene

(8) SIMAP similar genes for TRIM15 Gene using alignment to 4 proteins:

genes like me logo Genes that share paralogs with TRIM15: view

Variants for TRIM15 Gene

Sequence variations from dbSNP and Humsavar for TRIM15 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1008403 -- 30,165,050(-) GAGGA(A/G)GGGAG intron-variant, upstream-variant-2KB
rs1018846 -- 30,169,872(-) CTGCA(C/T)GGGAA intron-variant
rs1029237 -- 30,170,885(-) GTGAA(A/G)ATGAG intron-variant
rs1029238 -- 30,170,868(-) AGACT(C/T)GGCTT intron-variant
rs1029239 -- 30,170,385(-) ATAAT(C/G)AAATT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TRIM15 Gene

Variant ID Type Subtype PubMed ID
esv2731777 CNV deletion 23290073
esv3411275 CNV duplication 20981092
nsv1074389 CNV deletion 25765185
nsv1122126 CNV deletion 24896259
nsv1144137 CNV deletion 24896259
nsv601264 CNV loss 21841781

Variation tolerance for TRIM15 Gene

Residual Variation Intolerance Score: 84.8% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 7.63; 82.73% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for TRIM15 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRIM15

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TRIM15 Gene

Disorders for TRIM15 Gene

Relevant External Links for TRIM15

Genetic Association Database (GAD)
TRIM15
Human Genome Epidemiology (HuGE) Navigator
TRIM15
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TRIM15

No disorders were found for TRIM15 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TRIM15 Gene

Publications for TRIM15 Gene

  1. The tripartite motif family identifies cell compartments. (PMID: 11331580) Reymond A. … Ballabio A. (EMBO J. 2001) 2 3 4 64
  2. Isolation of novel non-HLA gene fragments from the hemochromatosis region (6p21.3) by cDNA hybridization selection. (PMID: 8304341) Goei V.L. … Gruen J.R. (Am. J. Hum. Genet. 1994) 2 3 4 64
  3. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 46 64
  4. Refining the association of MHC with multiple sclerosis in African Americans. (PMID: 20466734) McElroy J.P. … Gourraud P.A. (Hum. Mol. Genet. 2010) 3 46 64
  5. High-density SNP screening of the major histocompatibility complex in systemic lupus erythematosus demonstrates strong evidence for independent susceptibility regions. (PMID: 19851445) Barcellos L.F. … Criswell L.A. (PLoS Genet. 2009) 3 46 64

Products for TRIM15 Gene

Sources for TRIM15 Gene

Content
Loading form....