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Aliases for TRIB3 Gene

Aliases for TRIB3 Gene

  • Tribbles Pseudokinase 3 2 3 5
  • P65-Interacting Inhibitor Of NF-Kappa-B 3 4
  • C20orf97 3 4
  • SKIP3 3 4
  • TRB-3 3 4
  • TRB3 3 4
  • NIPK 3 4
  • SINK 3 4
  • Neuronal Cell Death Inducible Putative Kinase 3
  • Neuronal Cell Death-Inducible Putative Kinase 4
  • P65-Interacting Inhibitor Of NF-KappaB 3
  • Chromosome 20 Open Reading Frame 97 2
  • Tribbles Homolog 3 (Drosophila) 2
  • Tribbles Homolog 3 3

External Ids for TRIB3 Gene

Previous HGNC Symbols for TRIB3 Gene

  • C20orf97

Previous GeneCards Identifiers for TRIB3 Gene

  • GC20P000357
  • GC20P000309

Summaries for TRIB3 Gene

Entrez Gene Summary for TRIB3 Gene

  • The protein encoded by this gene is a putative protein kinase that is induced by the transcription factor NF-kappaB. The encoded protein is a negative regulator of NF-kappaB and can also sensitize cells to TNF- and TRAIL-induced apoptosis. In addition, this protein can negatively regulate the cell survival serine-threonine kinase AKT1. Differential promoter usage and alternate splicing result in multiple transcript variants. [provided by RefSeq, Jul 2014]

GeneCards Summary for TRIB3 Gene

TRIB3 (Tribbles Pseudokinase 3) is a Protein Coding gene. Diseases associated with TRIB3 include Diabetes Mellitus, Noninsulin-Dependent. Among its related pathways are CD28 co-stimulation and RET signaling. GO annotations related to this gene include transferase activity, transferring phosphorus-containing groups and protein kinase binding. An important paralog of this gene is TRIB1.

UniProtKB/Swiss-Prot for TRIB3 Gene

  • Disrupts insulin signaling by binding directly to Akt kinases and blocking their activation. May bind directly to and mask the Thr-308 phosphorylation site in AKT1. Binds to ATF4 and inhibits its transcriptional activation activity. Interacts with the NF-kappa-B transactivator p65 RELA and inhibits its phosphorylation and thus its transcriptional activation activity. Interacts with MAPK kinases and regulates activation of MAP kinases. May play a role in programmed neuronal cell death but does not appear to affect non-neuronal cells. Does not display kinase activity. Inhibits the transcriptional activity of DDIT3/CHOP and is involved in DDIT3/CHOP-dependent cell death during ER stress. Can inhibit APOBEC3A editing of nuclear DNA.

Gene Wiki entry for TRIB3 Gene

Additional gene information for TRIB3 Gene

No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRIB3 Gene

Genomics for TRIB3 Gene

Regulatory Elements for TRIB3 Gene

Enhancers for TRIB3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20H000368 2 FANTOM5 Ensembl ENCODE dbSUPER 21 +9.7 9686 7 HDGF PKNOX1 FOXA2 MLX ARNT ZFP64 ARID4B SIN3A DMAP1 YY1 TBC1D20 TRIB3 CSNK2A1 ENSG00000272874 DEFB129 DEFB126 DEFB125 RBCK1 SRXN1 ENSG00000206797
GH20H000377 1.4 ENCODE dbSUPER 25.3 +18.2 18231 6 PKNOX1 MLX ARNT ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 TRIB3 SOX12 TBC1D20 RBCK1 NRSN2 NRSN2-AS1 ACTG1P3 GC20P000385 GC20P000387
GH20H000330 1.4 Ensembl ENCODE dbSUPER 10.8 -32.0 -31987 1 ELF3 ARID4B KLF17 THRB RAD21 RFX5 ZNF143 ZNF207 MIXL1 THAP11 ZCCHC3 C20orf96 RBCK1 TRIB3 DEFB132 DEFB129 GC20P000328 GC20M000330
GH20H000432 1.1 Ensembl ENCODE 12 +71.8 71783 3 PKNOX1 RB1 ZFP64 BATF RAD21 ETV6 RUNX3 CREM IKZF2 EGR2 RBCK1 NRSN2 NRSN2-AS1 TRIB3 CSNK2A1 TBC1D20 GC20P000435
GH20H000477 0.8 ENCODE 11.7 +115.5 115485 1 ELF3 SOX13 CTCF ZNF792 ARNT ARID4B ZNF175 CEBPG DNMT3B KMT2B ENSG00000206797 RBCK1 NRSN2 NRSN2-AS1 TRIB3 TBC1D20 CSNK2A1 GC20P000482 GC20P000462
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TRIB3 on UCSC Golden Path with GeneCards custom track

Genomic Location for TRIB3 Gene

Chromosome:
20
Start:
362,835 bp from pter
End:
397,559 bp from pter
Size:
34,725 bases
Orientation:
Plus strand

Genomic View for TRIB3 Gene

Genes around TRIB3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRIB3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRIB3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRIB3 Gene

Proteins for TRIB3 Gene

  • Protein details for TRIB3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96RU7-TRIB3_HUMAN
    Recommended name:
    Tribbles homolog 3
    Protein Accession:
    Q96RU7
    Secondary Accessions:
    • Q53GU4
    • Q53ZW7
    • Q6I9Y9
    • Q8TAI6
    • Q9H5M8
    • Q9NUD2

    Protein attributes for TRIB3 Gene

    Size:
    358 amino acids
    Molecular mass:
    39578 Da
    Quaternary structure:
    • Interacts with AKT1, AKT2, ATF4, MAP2K1 and MAP2K7. Interacts with DDIT3/CHOP and inhibits its interaction with EP300/P300. Interacts (via N-terminus) with APOBEC3A. Interacts with APOBEC3C.

neXtProt entry for TRIB3 Gene

Post-translational modifications for TRIB3 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for TRIB3 Gene

Domains & Families for TRIB3 Gene

Gene Families for TRIB3 Gene

IUPHAR :
Human Protein Atlas (HPA):
  • Enzymes
  • Predicted intracellular proteins

Protein Domains for TRIB3 Gene

Suggested Antigen Peptide Sequences for TRIB3 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q96RU7

UniProtKB/Swiss-Prot:

TRIB3_HUMAN :
  • The protein kinase domain is predicted to be catalytically inactive.
  • Belongs to the protein kinase superfamily. CAMK Ser/Thr protein kinase family. Tribbles subfamily.
Domain:
  • The protein kinase domain is predicted to be catalytically inactive.
Family:
  • Belongs to the protein kinase superfamily. CAMK Ser/Thr protein kinase family. Tribbles subfamily.
genes like me logo Genes that share domains with TRIB3: view

Function for TRIB3 Gene

Molecular function for TRIB3 Gene

UniProtKB/Swiss-Prot Function:
Disrupts insulin signaling by binding directly to Akt kinases and blocking their activation. May bind directly to and mask the Thr-308 phosphorylation site in AKT1. Binds to ATF4 and inhibits its transcriptional activation activity. Interacts with the NF-kappa-B transactivator p65 RELA and inhibits its phosphorylation and thus its transcriptional activation activity. Interacts with MAPK kinases and regulates activation of MAP kinases. May play a role in programmed neuronal cell death but does not appear to affect non-neuronal cells. Does not display kinase activity. Inhibits the transcriptional activity of DDIT3/CHOP and is involved in DDIT3/CHOP-dependent cell death during ER stress. Can inhibit APOBEC3A editing of nuclear DNA.
UniProtKB/Swiss-Prot Induction:
By hypoxia, TNF, and by nutrient starvation. Expression is PI 3-kinase and/or NF-kappa-B-dependent. Induced by ER stress via ATF4-DDIT3/CHOP pathway and can downregulate its own induction by repression of ATF4-DDIT3/CHOP functions.

Phenotypes From GWAS Catalog for TRIB3 Gene

Gene Ontology (GO) - Molecular Function for TRIB3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003714 transcription corepressor activity ISS,IEA --
GO:0004672 protein kinase activity IEA --
GO:0004860 protein kinase inhibitor activity IEA --
GO:0005515 protein binding IPI 12743605
GO:0005524 ATP binding IEA --
genes like me logo Genes that share ontologies with TRIB3: view
genes like me logo Genes that share phenotypes with TRIB3: view

Animal Models for TRIB3 Gene

MGI Knock Outs for TRIB3:

Animal Model Products

  • Taconic Biosciences Mouse Models for TRIB3

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Addgene plasmids for TRIB3
  • Applied Biological Materials Clones for TRIB3
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for TRIB3 Gene

Localization for TRIB3 Gene

Subcellular locations from UniProtKB/Swiss-Prot for TRIB3 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for TRIB3 gene
Compartment Confidence
nucleus 5
cytosol 5
plasma membrane 4
mitochondrion 3
peroxisome 2
endoplasmic reticulum 2

Subcellular locations from the

Human Protein Atlas (HPA)
  • Nuclear membrane (3)
  • Nucleoli (3)
  • Nucleus (3)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for TRIB3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus ISS,IEA --
GO:0005730 nucleolus IDA --
GO:0005829 cytosol TAS --
GO:0005886 plasma membrane TAS --
GO:0031965 nuclear membrane IDA --
genes like me logo Genes that share ontologies with TRIB3: view

Pathways & Interactions for TRIB3 Gene

SuperPathways for TRIB3 Gene

genes like me logo Genes that share pathways with TRIB3: view

Gene Ontology (GO) - Biological Process for TRIB3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000122 negative regulation of transcription from RNA polymerase II promoter IDA 15775988
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA --
GO:0006468 protein phosphorylation IEA --
GO:0006469 negative regulation of protein kinase activity IEA,IDA 12791994
genes like me logo Genes that share ontologies with TRIB3: view

No data available for SIGNOR curated interactions for TRIB3 Gene

Drugs & Compounds for TRIB3 Gene

(1) Drugs for TRIB3 Gene - From: Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
genes like me logo Genes that share compounds with TRIB3: view

Transcripts for TRIB3 Gene

Unigene Clusters for TRIB3 Gene

Tribbles homolog 3 (Drosophila):
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Addgene plasmids for TRIB3
  • Applied Biological Materials Clones for TRIB3
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for TRIB3 Gene

ExUns: 1a · 1b ^ 2a · 2b · 2c · 2d ^ 3 ^ 4 ^ 5a · 5b ^ 6 ^ 7a · 7b · 7c ^ 8a · 8b · 8c
SP1: - - - - - - -
SP2: - - - - - -
SP3: - - -
SP4: -
SP5: - -
SP6:

Relevant External Links for TRIB3 Gene

GeneLoc Exon Structure for
TRIB3
ECgene alternative splicing isoforms for
TRIB3

Expression for TRIB3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TRIB3 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for TRIB3 Gene

This gene is overexpressed in Liver (x9.4).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for TRIB3 Gene



NURSA nuclear receptor signaling pathways regulating expression of TRIB3 Gene:

TRIB3

SOURCE GeneReport for Unigene cluster for TRIB3 Gene:

Hs.516826

mRNA Expression by UniProt/SwissProt for TRIB3 Gene:

Q96RU7-TRIB3_HUMAN
Tissue specificity: Highest expression in liver, pancreas, peripheral blood leukocytes and bone marrow. Also highly expressed in a number of primary lung, colon and breast tumors. Expressed in spleen, thymus, and prostate and is undetectable in other examined tissues, including testis, ovary, small intestine, colon, leukocyte, heart, brain, placenta, lung, skeletal muscle, and kidney.

Evidence on tissue expression from TISSUES for TRIB3 Gene

  • Muscle(4.5)
  • Liver(4.4)
  • Lung(2.6)
  • Pancreas(2.1)
  • Intestine(2)
genes like me logo Genes that share expression patterns with TRIB3: view

Primer Products

No data available for Protein differential expression in normal tissues , Protein tissue co-expression partners and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRIB3 Gene

Orthologs for TRIB3 Gene

This gene was present in the common ancestor of animals.

Orthologs for TRIB3 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TRIB3 33 34
  • 96.37 (n)
dog
(Canis familiaris)
Mammalia TRIB3 33 34
  • 84.97 (n)
cow
(Bos Taurus)
Mammalia TRIB3 33 34
  • 81.7 (n)
mouse
(Mus musculus)
Mammalia Trib3 33 16 34
  • 76.84 (n)
rat
(Rattus norvegicus)
Mammalia Trib3 33
  • 75.17 (n)
oppossum
(Monodelphis domestica)
Mammalia TRIB3 34
  • 64 (a)
OneToOne
chicken
(Gallus gallus)
Aves -- 34
  • 21 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia TRIB3 34
  • 60 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii trib3 33 34
  • 57.91 (n)
fruit fly
(Drosophila melanogaster)
Insecta trbl 34
  • 23 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea nipi-3 34
  • 11 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea CSA.8356 34
  • 32 (a)
OneToMany
Species where no ortholog for TRIB3 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for TRIB3 Gene

ENSEMBL:
Gene Tree for TRIB3 (if available)
TreeFam:
Gene Tree for TRIB3 (if available)

Paralogs for TRIB3 Gene

Paralogs for TRIB3 Gene

(5) SIMAP similar genes for TRIB3 Gene using alignment to 3 proteins:

genes like me logo Genes that share paralogs with TRIB3: view

Variants for TRIB3 Gene

Sequence variations from dbSNP and Humsavar for TRIB3 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type
rs757496714 A glioblastoma multiforme sample 388,189(+) TGCAA(C/T)TGCTG reference, missense
rs1000068301 -- 398,006(+) GGTCA(C/T)TGTAG downstream-variant-500B
rs1000232773 -- 382,878(+) TTCCC(C/T)TCCAA intron-variant
rs1000307157 -- 387,840(+) TGGAA(G/T)ATAAA intron-variant
rs1000310121 -- 396,080(+) GGCTT(G/T)TGTCT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TRIB3 Gene

Variant ID Type Subtype PubMed ID
dgv4219n100 CNV gain 25217958
dgv773e199 CNV deletion 23128226
esv2057444 CNV deletion 18987734
esv2657243 CNV deletion 23128226
esv3644950 CNV loss 21293372
esv3644951 CNV loss 21293372
esv3644952 CNV gain 21293372
esv3644953 CNV gain 21293372
esv3893263 CNV loss 25118596
nsv1065287 CNV loss 25217958
nsv1109346 CNV deletion 24896259
nsv458839 CNV loss 19166990
nsv458841 CNV loss 19166990
nsv458842 CNV loss 19166990
nsv470534 CNV loss 18288195
nsv510777 CNV deletion 20534489
nsv519415 CNV loss 19592680
nsv585169 CNV loss 21841781
nsv585170 CNV loss 21841781
nsv585171 CNV loss 21841781

Variation tolerance for TRIB3 Gene

Residual Variation Intolerance Score: 92.5% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 7.14; 80.69% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for TRIB3 Gene

Human Gene Mutation Database (HGMD)
TRIB3
SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRIB3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TRIB3 Gene

Disorders for TRIB3 Gene

MalaCards: The human disease database

(1) MalaCards diseases for TRIB3 Gene - From: DISEASES and Novoseek

Disorder Aliases PubMed IDs
diabetes mellitus, noninsulin-dependent
  • diabetes, type 2
- elite association - COSMIC cancer census association via MalaCards
Search TRIB3 in MalaCards View complete list of genes associated with diseases

Relevant External Links for TRIB3

Genetic Association Database (GAD)
TRIB3
Human Genome Epidemiology (HuGE) Navigator
TRIB3
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TRIB3
genes like me logo Genes that share disorders with TRIB3: view

No data available for UniProtKB/Swiss-Prot and Genatlas for TRIB3 Gene

Publications for TRIB3 Gene

  1. Association of TRB3 gene Q84R polymorphism with type 2 diabetes mellitus in Chinese population. (PMID: 19291425) Shi Z … Zhang J (Endocrine 2009) 3 22 45 60
  2. TRB3 is a PI 3-kinase dependent indicator for nutrient starvation. (PMID: 16129579) Schwarzer R … Kaufmann J (Cellular signalling 2006) 3 4 22 60
  3. The functional Q84R polymorphism of mammalian Tribbles homolog TRB3 is associated with insulin resistance and related cardiovascular risk in Caucasians from Italy. (PMID: 16123373) Prudente S … Trischitta V (Diabetes 2005) 3 22 45 60
  4. Characterization of human NIPK (TRB3, SKIP3) gene activation in stressful conditions. (PMID: 15781252) Ord D … Ord T (Biochemical and biophysical research communications 2005) 3 4 22 60
  5. TRB3, a novel ER stress-inducible gene, is induced via ATF4-CHOP pathway and is involved in cell death. (PMID: 15775988) Ohoka N … Hayashi H (The EMBO journal 2005) 3 4 22 60

Products for TRIB3 Gene

  • Addgene plasmids for TRIB3

Sources for TRIB3 Gene

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