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Aliases for TRI-AAT5-2 Gene

Subcategory (RNA class) for TRI-AAT5-2 Gene

non-coding RNA

Quality Score for this RNA gene is

2

Aliases for TRI-AAT5-2 Gene

  • Transfer RNA-Ile (AAT) 5-2 2 3
  • Transfer RNA Isoleucine 20 (Anticodon AAU) 2 3
  • Transfer RNA-Ile (AAT) 5-4 2 3
  • TRNA-Ile-AAT-5-4 3
  • TRI-AAT5-4 3
  • TRNAI20 3

External Ids for TRI-AAT5-2 Gene

Previous HGNC Symbols for TRI-AAT5-2 Gene

  • TRNAI20
  • TRI-AAT5-4

Previous GeneCards Identifiers for TRI-AAT5-2 Gene

  • GC17P008193
  • GC17P008196

Summaries for TRI-AAT5-2 Gene

GeneCards Summary for TRI-AAT5-2 Gene

TRI-AAT5-2 (Transfer RNA-Ile (AAT) 5-2) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRI-AAT5-2 Gene

Genomics for TRI-AAT5-2 Gene

Regulatory Elements for TRI-AAT5-2 Gene

Enhancers for TRI-AAT5-2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06F027176 1.8 FANTOM5 Ensembl ENCODE 0.8 -0.4 -425 3.4 CREB3L1 FEZF1 YY1 ZNF143 ZNF263 SP3 NFYC TBX21 SSRP1 ZNF610 ZNF391 BTN3A2 ZNF204P ZKSCAN8 ZNF192P1 ABT1 ZNF322 HIST1H2BK ENSG00000271755 ENSG00000261353
GH06F027187 1.7 FANTOM5 Ensembl ENCODE 0.4 -11.2 -11187 2.2 HDGF PKNOX1 ATF1 ARNT YBX1 ZNF2 YY1 ZNF121 ELK1 ZNF263 HMGN4 ABT1 ZKSCAN8 BTN2A2 HIST1H2AH BTN3A2 LOC102724851 TRI-AAT5-2 GC06M027207 TRV-CAC6-1
GH06F027167 1.3 Ensembl ENCODE 0.4 +8.9 8934 2.7 HDGF ATF1 PKNOX1 ARNT CREB3L1 YY1 ZNF121 ZNF766 FOS KLF13 HMGN4 BTN3A2 ABT1 ZKSCAN8 TRI-AAT5-2 TRT-AGT6-1
GH06F027205 1.1 Ensembl ENCODE 0.3 -28.7 -28695 1.2 BCOR TBP CBX3 NFRKB TAL1 MAX GTF3C2 POLR3A ADNP ZSCAN29 ABT1 ZKSCAN8 POM121L2 ZNF391 BTN3A1 BTN3A2 ZNF602P GC06M027207 TRV-CAC6-1 TRI-AAT5-2
GH06F027195 0.6 Ensembl 0.3 -18.6 -18570 0.3 BCOR CBX3 PKNOX1 CHAMP1 ZNF121 TRIM24 PRDM1 SETDB1 TRIM28 BTN3A2 LOC102724851 GC06M027207 TRV-CAC6-1 TRI-AAT5-2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TRI-AAT5-2 on UCSC Golden Path with GeneCards custom track

Genomic Location for TRI-AAT5-2 Gene

Chromosome:
6
Start:
27,177,215 bp from pter
End:
27,177,288 bp from pter
Size:
74 bases
Orientation:
Minus strand

Genomic View for TRI-AAT5-2 Gene

Genes around TRI-AAT5-2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRI-AAT5-2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRI-AAT5-2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRI-AAT5-2 Gene

Proteins for TRI-AAT5-2 Gene

Post-translational modifications for TRI-AAT5-2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRI-AAT5-2 Gene

Domains & Families for TRI-AAT5-2 Gene

Gene Families for TRI-AAT5-2 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRI-AAT5-2: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRI-AAT5-2 Gene

Function for TRI-AAT5-2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRI-AAT5-2 Gene

Localization for TRI-AAT5-2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TRI-AAT5-2 Gene

Pathways & Interactions for TRI-AAT5-2 Gene

SuperPathways for TRI-AAT5-2 Gene

No Data Available

Interacting Proteins for TRI-AAT5-2 Gene

Gene Ontology (GO) - Biological Process for TRI-AAT5-2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRI-AAT5-2 Gene

Transcripts for TRI-AAT5-2 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for TRI-AAT5-2 Gene

No ASD Table

Relevant External Links for TRI-AAT5-2 Gene

GeneLoc Exon Structure for
TRI-AAT5-2
ECgene alternative splicing isoforms for
TRI-AAT5-2

No data available for mRNA/cDNA for TRI-AAT5-2 Gene

Expression for TRI-AAT5-2 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for TRI-AAT5-2 Gene

Orthologs for TRI-AAT5-2 Gene

No data available for Orthologs and Evolution for TRI-AAT5-2 Gene

Paralogs for TRI-AAT5-2 Gene

No data available for Paralogs for TRI-AAT5-2 Gene

Variants for TRI-AAT5-2 Gene

Relevant External Links for TRI-AAT5-2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRI-AAT5-2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRI-AAT5-2 Gene

Disorders for TRI-AAT5-2 Gene

No disorders were found for TRI-AAT5-2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRI-AAT5-2 Gene

Publications for TRI-AAT5-2 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan P.P. … Lowe T.M. (Nucleic Acids Res. 2009) 3 64

Products for TRI-AAT5-2 Gene

Sources for TRI-AAT5-2 Gene

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