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Aliases for TRHDE-AS1 Gene

Subcategory (RNA class) for TRHDE-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TRHDE-AS1 Gene

  • TRHDE Antisense RNA 1 2 3 5
  • TRHDE Antisense RNA 1 (Non-Protein Coding) 2

External Ids for TRHDE-AS1 Gene

Previous GeneCards Identifiers for TRHDE-AS1 Gene

  • GC12M072648

Summaries for TRHDE-AS1 Gene

GeneCards Summary for TRHDE-AS1 Gene

TRHDE-AS1 (TRHDE Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRHDE-AS1 Gene

Genomics for TRHDE-AS1 Gene

Genomic Location for TRHDE-AS1 Gene

Chromosome:
12
Start:
72,253,507 bp from pter
End:
72,274,907 bp from pter
Size:
21,401 bases
Orientation:
Minus strand

Genomic View for TRHDE-AS1 Gene

Genes around TRHDE-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRHDE-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRHDE-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRHDE-AS1 Gene

No data available for Regulatory Elements for TRHDE-AS1 Gene

Proteins for TRHDE-AS1 Gene

Post-translational modifications for TRHDE-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRHDE-AS1 Gene

Domains & Families for TRHDE-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRHDE-AS1 Gene

Function for TRHDE-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRHDE-AS1 Gene

Localization for TRHDE-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TRHDE-AS1 Gene

Pathways & Interactions for TRHDE-AS1 Gene

SuperPathways for TRHDE-AS1 Gene

No Data Available

Interacting Proteins for TRHDE-AS1 Gene

Gene Ontology (GO) - Biological Process for TRHDE-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRHDE-AS1 Gene

Drugs & Compounds for TRHDE-AS1 Gene

No Compound Related Data Available

Transcripts for TRHDE-AS1 Gene

mRNA/cDNA for TRHDE-AS1 Gene

(1) REFSEQ mRNAs :
(7) Additional mRNA sequences :
(13) Selected AceView cDNA sequences:
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TRHDE-AS1 Gene

TRHDE antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TRHDE-AS1 Gene

No ASD Table

Relevant External Links for TRHDE-AS1 Gene

GeneLoc Exon Structure for
TRHDE-AS1
ECgene alternative splicing isoforms for
TRHDE-AS1

Expression for TRHDE-AS1 Gene

mRNA expression in normal human tissues for TRHDE-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for TRHDE-AS1 Gene

This gene is overexpressed in Brain - Cerebellar Hemisphere (x7.0), Brain - Cerebellum (x6.4), and Adipose - Subcutaneous (x5.3).

SOURCE GeneReport for Unigene cluster for TRHDE-AS1 Gene Hs.363603

genes like me logo Genes that share expression patterns with TRHDE-AS1: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for TRHDE-AS1 Gene

Orthologs for TRHDE-AS1 Gene

Evolution for TRHDE-AS1 Gene

ENSEMBL:
Gene Tree for TRHDE-AS1 (if available)
TreeFam:
Gene Tree for TRHDE-AS1 (if available)

No data available for Orthologs for TRHDE-AS1 Gene

Paralogs for TRHDE-AS1 Gene

No data available for Paralogs for TRHDE-AS1 Gene

Variants for TRHDE-AS1 Gene

Sequence variations from dbSNP and Humsavar for TRHDE-AS1 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs4073007 -- 72,254,297(-) GAGCA(A/G)TTATA nc-transcript-variant
rs4073008 -- 72,254,510(-) GAACA(C/T)AGATA nc-transcript-variant
rs4073009 -- 72,254,507(-) CATAG(A/G)TAATG nc-transcript-variant
rs4544048 -- 72,258,485(+) CTTTA(G/T)AGCTG intron-variant
rs4760826 -- 72,269,146(+) GAATG(A/G)ACATT intron-variant

Relevant External Links for TRHDE-AS1 Gene

HapMap Linkage Disequilibrium report
TRHDE-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRHDE-AS1 Gene

Disorders for TRHDE-AS1 Gene

Relevant External Links for TRHDE-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TRHDE-AS1

No disorders were found for TRHDE-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TRHDE-AS1 Gene

Publications for TRHDE-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 67
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for TRHDE-AS1 Gene

Sources for TRHDE-AS1 Gene

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