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Aliases for TRHDE-AS1 Gene

Subcategory (RNA class) for TRHDE-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TRHDE-AS1 Gene

  • TRHDE Antisense RNA 1 2 3 5
  • TRHDE Antisense RNA 1 (Non-Protein Coding) 2

External Ids for TRHDE-AS1 Gene

Previous GeneCards Identifiers for TRHDE-AS1 Gene

  • GC12M072648

Summaries for TRHDE-AS1 Gene

GeneCards Summary for TRHDE-AS1 Gene

TRHDE-AS1 (TRHDE Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRHDE-AS1 Gene

Genomics for TRHDE-AS1 Gene

Regulatory Elements for TRHDE-AS1 Gene

Enhancers for TRHDE-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12G072269 1.3 Ensembl ENCODE dbSUPER 9.6 +1.1 1067 8.7 CTCF PKNOX1 MXI1 SUZ12 ZSCAN4 RBBP5 POLR2A FOS EZH2 L3MBTL2 TRHDE-AS1 TRHDE GC12P072258
GH12G072293 0.9 FANTOM5 ENCODE 5.9 -21.0 -20954 4.3 JUND BHLHE40 ZSCAN4 FOS NFE2 MAFK NFE2L2 TRHDE TPH2 TRHDE-AS1 ENSG00000257287
GH12G072279 0.9 ENCODE dbSUPER 0.4 -5.7 -5689 2.0 MTA2 ZBED1 BHLHE40 JUNB DPF2 TBX21 CBX5 IKZF1 SCRT2 TCF7 TRHDE-AS1 ENSG00000257287
GH12G072298 0.4 FANTOM5 0.3 -23.4 -23397 0.3 PKNOX1 TPH2 TRHDE TRHDE-AS1 ENSG00000257287
GH12G072346 0.6 ENCODE 0.2 -71.6 -71639 0.2 CTCF ZNF654 SMARCA4 MAX SMC3 REST NFE2 RAD21 TRHDE-AS1 ENSG00000257287
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TRHDE-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for TRHDE-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000269074 1507 801 CTCF MXI1 SUZ12 BHLHE40 CBX2 REST RBBP5 EZH2

Genomic Location for TRHDE-AS1 Gene

Chromosome:
12
Start:
72,253,507 bp from pter
End:
72,274,907 bp from pter
Size:
21,401 bases
Orientation:
Minus strand

Genomic View for TRHDE-AS1 Gene

Genes around TRHDE-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRHDE-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRHDE-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRHDE-AS1 Gene

Proteins for TRHDE-AS1 Gene

Post-translational modifications for TRHDE-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRHDE-AS1 Gene

Domains & Families for TRHDE-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRHDE-AS1 Gene

Function for TRHDE-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRHDE-AS1 Gene

Localization for TRHDE-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TRHDE-AS1 Gene

Pathways & Interactions for TRHDE-AS1 Gene

SuperPathways for TRHDE-AS1 Gene

No Data Available

Interacting Proteins for TRHDE-AS1 Gene

Gene Ontology (GO) - Biological Process for TRHDE-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRHDE-AS1 Gene

Drugs & Compounds for TRHDE-AS1 Gene

No Compound Related Data Available

Transcripts for TRHDE-AS1 Gene

mRNA/cDNA for TRHDE-AS1 Gene

(1) REFSEQ mRNAs :
(7) Additional mRNA sequences :
(13) Selected AceView cDNA sequences:
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TRHDE-AS1 Gene

TRHDE antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TRHDE-AS1 Gene

No ASD Table

Relevant External Links for TRHDE-AS1 Gene

GeneLoc Exon Structure for
TRHDE-AS1
ECgene alternative splicing isoforms for
TRHDE-AS1

Expression for TRHDE-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TRHDE-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for TRHDE-AS1 Gene

This gene is overexpressed in Brain - Cerebellar Hemisphere (x7.0), Brain - Cerebellum (x6.4), and Adipose - Subcutaneous (x5.3).

SOURCE GeneReport for Unigene cluster for TRHDE-AS1 Gene:

Hs.363603
genes like me logo Genes that share expression patterns with TRHDE-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRHDE-AS1 Gene

Orthologs for TRHDE-AS1 Gene

Evolution for TRHDE-AS1 Gene

ENSEMBL:
Gene Tree for TRHDE-AS1 (if available)
TreeFam:
Gene Tree for TRHDE-AS1 (if available)

No data available for Orthologs for TRHDE-AS1 Gene

Paralogs for TRHDE-AS1 Gene

No data available for Paralogs for TRHDE-AS1 Gene

Variants for TRHDE-AS1 Gene

Sequence variations from dbSNP and Humsavar for TRHDE-AS1 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs1000112346 -- 72,256,761(+) CCTTC(C/T)TGTGG intron-variant
rs1000238280 -- 72,263,570(+) TATGT(C/T)AGAAT intron-variant, nc-transcript-variant
rs1000466903 -- 72,272,074(+) CAGCT(G/T)CAGGG intron-variant, nc-transcript-variant, upstream-variant-2KB
rs1000571696 -- 72,261,977(+) AATGG(A/C)ACACC intron-variant
rs1000623995 -- 72,262,244(+) GCTCA(C/T)TCTGT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TRHDE-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2422452 CNV duplication 17116639
esv2662698 CNV deletion 23128226
esv3629926 CNV loss 21293372
nsv1044083 CNV gain 25217958
nsv469465 CNV gain 19166990
nsv559362 CNV loss 21841781
nsv559363 CNV gain 21841781
nsv770 CNV deletion 18451855
nsv826433 CNV loss 20364138
nsv832452 CNV gain 17160897

Relevant External Links for TRHDE-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRHDE-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TRHDE-AS1 Gene

Disorders for TRHDE-AS1 Gene

Relevant External Links for TRHDE-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TRHDE-AS1

No disorders were found for TRHDE-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TRHDE-AS1 Gene

Publications for TRHDE-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for TRHDE-AS1 Gene

Sources for TRHDE-AS1 Gene

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