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Aliases for TRGV6 Gene

Aliases for TRGV6 Gene

  • T-Cell Receptor Gamma Variable 6 (Pseudogene) 2 5
  • T-Cell Receptor, Gamma, Variable Region V5P (Pseudogene) 2 3
  • T Cell Receptor Gamma Variable 6 (Pseudogene) 2 3
  • T-Cell Receptor, Gamma, Variable Region V6 (Pseudogene) 3
  • T Cell Receptor Gamma Variable 6 Pseudogene 2
  • T Cell Receptor Gamma Variable 6 2
  • TCRGV5P 3
  • TCRGV6 3
  • V1S5P 3
  • V1S6P 3

External Ids for TRGV6 Gene

Previous HGNC Symbols for TRGV6 Gene

  • TCRGV6

Previous GeneCards Identifiers for TRGV6 Gene

  • GC07U990111
  • GC07M038087
  • GC07M038121
  • GC07M038153
  • GC07M038346
  • GC07M038380
  • GC07M038264
  • GC07M038439
  • GC07M038462
  • GC07M038476
  • GC07M038488
  • GC07M038501
  • GC07M038514

Summaries for TRGV6 Gene

GeneCards Summary for TRGV6 Gene

TRGV6 (T-Cell Receptor Gamma Variable 6 (Pseudogene)) is a Pseudogene.

Additional gene information for TRGV6 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRGV6 Gene

Genomics for TRGV6 Gene

Regulatory Elements for TRGV6 Gene

Enhancers for TRGV6 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07H038344 1.3 Ensembl ENCODE dbSUPER 5.8 -4.3 -4340 2 HDGF CTCF RB1 RAD21 TCF12 EGR1 ZNF366 ZBTB48 EED ZNF143 TRGV4 TRGV5P TRGV3 AMPH TRGV6 TRGV5
GH07H038334 1.8 FANTOM5 Ensembl ENCODE dbSUPER 0.7 +4.8 4831 3 HDGF PKNOX1 ATF1 ARNT ZNF2 ZNF143 ATF7 RUNX3 SP3 REST ENSG00000272908 TRGV5 TRGV5P STARD3NL AMPH TRGV6 TRGV7
GH07H038340 1.5 Ensembl ENCODE dbSUPER 0.7 -0.4 -400 3 HDGF PKNOX1 ATF1 ARNT ATF7 NCOA1 REST ZNF592 SMARCA4 ZNF184 TRGV4 TRGV3 TRGV5P TRG-AS1 TRGV6
GH07H038339 0.4 Ensembl 0.7 +1.6 1571 0 PKNOX1 ZNF512 TRGV6 TRGV7
GH07H038338 0.4 dbSUPER 0.7 +2.6 2563 0 CEBPB CEBPG TRGV5P TRGV5 TRGV4 TRGV6 TRGV7
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TRGV6 on UCSC Golden Path with GeneCards custom track

Genomic Location for TRGV6 Gene

Chromosome:
7
Start:
38,340,700 bp from pter
End:
38,341,171 bp from pter
Size:
472 bases
Orientation:
Minus strand

Genomic View for TRGV6 Gene

Genes around TRGV6 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRGV6 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRGV6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRGV6 Gene

Proteins for TRGV6 Gene

Post-translational modifications for TRGV6 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRGV6 Gene

Domains & Families for TRGV6 Gene

Gene Families for TRGV6 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRGV6: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRGV6 Gene

Function for TRGV6 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for TRGV6
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRGV6 Gene

Localization for TRGV6 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRGV6 Gene

Pathways & Interactions for TRGV6 Gene

SuperPathways for TRGV6 Gene

No Data Available

Interacting Proteins for TRGV6 Gene

Gene Ontology (GO) - Biological Process for TRGV6 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRGV6 Gene

Drugs & Compounds for TRGV6 Gene

No Compound Related Data Available

Transcripts for TRGV6 Gene

mRNA/cDNA for TRGV6 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for TRGV6
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for TRGV6 Gene

No ASD Table

Relevant External Links for TRGV6 Gene

GeneLoc Exon Structure for
TRGV6
ECgene alternative splicing isoforms for
TRGV6

Expression for TRGV6 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TRGV6 Gene

mRNA differential expression in normal tissues according to GTEx for TRGV6 Gene

This gene is overexpressed in Testis (x18.2), Prostate (x8.1), Spleen (x6.8), Whole Blood (x5.4), and Lung (x4.0).

NURSA nuclear receptor signaling pathways regulating expression of TRGV6 Gene:

TRGV6
genes like me logo Genes that share expression patterns with TRGV6: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRGV6 Gene

Orthologs for TRGV6 Gene

Evolution for TRGV6 Gene

ENSEMBL:
Gene Tree for TRGV6 (if available)
TreeFam:
Gene Tree for TRGV6 (if available)

No data available for Orthologs for TRGV6 Gene

Paralogs for TRGV6 Gene

No data available for Paralogs for TRGV6 Gene

Variants for TRGV6 Gene

Relevant External Links for TRGV6 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRGV6

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRGV6 Gene

Disorders for TRGV6 Gene

No disorders were found for TRGV6 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRGV6 Gene

Publications for TRGV6 Gene

  1. Variable region genes in the human T-cell rearranging gamma (TRG) locus: V-J junction and homology with the mouse genes. (PMID: 2969332) Huck S … Lefranc MP (The EMBO journal 1988) 2 3 60
  2. Diversity and rearrangement of the human T cell rearranging gamma genes: nine germ-line variable genes belonging to two subgroups. (PMID: 2938743) LeFranc MP … Rabbitts TH (Cell 1986) 2 3 60
  3. The human T-cell receptor gamma (TRG) genes. (PMID: 2527426) Lefranc MP … Rabbitts TH (Trends in biochemical sciences 1989) 3 60

Products for TRGV6 Gene

Sources for TRGV6 Gene

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