Free for academic non-profit institutions. Other users need a Commercial license

TRGV6 Gene(Pseudogene)

T Cell Receptor Gamma Variable 6 (Pseudogene)

GCID:
GC07M038544
GIFtS:
11
Genes Participants
UDN Logo

Aliases for TRGV6 Gene

Aliases for TRGV6 Gene

  • T Cell Receptor Gamma Variable 6 (Pseudogene) 2 3
  • T-Cell Receptor, Gamma, Variable Region V5P (Pseudogene) 2 3
  • TCRGV6 2 3
  • T-Cell Receptor, Gamma, Variable Region V6 (Pseudogene) 3
  • T-Cell Receptor Gamma Variable 6 (Pseudogene) 5
  • TCRGV5P 3
  • V1S5P 3
  • V1S6P 3

External Ids for TRGV6 Gene

Previous HGNC Symbols for TRGV6 Gene

  • TCRGV6

Previous GeneCards Identifiers for TRGV6 Gene

  • GC07U990111
  • GC07M038087
  • GC07M038121
  • GC07M038153
  • GC07M038346
  • GC07M038380
  • GC07M038264
  • GC07M038439
  • GC07M038462
  • GC07M038476
  • GC07M038488
  • GC07M038501
  • GC07M038514
  • GC07M038526

Summaries for TRGV6 Gene

GeneCards Summary for TRGV6 Gene

TRGV6 (T Cell Receptor Gamma Variable 6 (Pseudogene)) is a Pseudogene.

Additional gene information for TRGV6 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRGV6 Gene

Genomics for TRGV6 Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for TRGV6 Gene

Promoters and enhancers for TRGV6 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH07I038340 Enhancer 1.3 Ensembl ENCODE dbSUPER 550.8 -0.4 -400 3.3 HDGF PKNOX1 ATF1 ARNT POLR2B E2F8 ARID2 ATF7 ZNF263 NCOA1 TRG-AS1 TRGV6 TRGV4 TRGV3 TRGV5P TRG
GH07I038339 Enhancer 0.4 Ensembl 550.8 +1.6 1570 0.4 PKNOX1 ZNF512 TRG-AS1 TRGV6 TRGV7 TRG
GH07I038344 Enhancer 1.1 Ensembl ENCODE dbSUPER 5.8 -4.3 -4339 3 HDGF CTCF RB1 EBF1 RAD21 TCF12 ZNF366 ZBTB48 EGR1 ZNF143 TRGV5P TRGV4 TRGV3 AMPH TRGV6 TRG-AS1 TRGV5 TRG
GH07I038334 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.8 +4.8 4830 3.7 HDGF PKNOX1 ARNT SIN3A ZNF2 POLR2B E2F8 ZNF143 ZNF263 SP3 TRGV7 ENSG00000272908 TRGV5 TRGV5P STARD3NL AMPH TRGV6 TRG
GH07I038338 Enhancer 0.4 dbSUPER 0.8 +2.6 2562 0.7 CEBPB CEBPG TRGV5P TRGV5 TRGV4 TRGV6 TRGV7 TRG
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TRGV6 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TRGV6 Gene

Genomic Locations for TRGV6 Gene
chr7:38,340,700-38,341,171
(GRCh38/hg38)
Size:
472 bases
Orientation:
Minus strand
chr7:38,380,301-38,380,772
(GRCh37/hg19)

Genomic View for TRGV6 Gene

Genes around TRGV6 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRGV6 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRGV6 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for TRGV6 Gene

Proteins for TRGV6 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for TRGV6 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRGV6 Gene

Domains & Families for TRGV6 Gene

Gene Families for TRGV6 Gene

HGNC:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRGV6: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRGV6 Gene

Function for TRGV6 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for TRGV6 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRGV6 Gene

Localization for TRGV6 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRGV6 Gene

Pathways & Interactions for TRGV6 Gene

SuperPathways for TRGV6 Gene

PathCards logo More details on SuperPathways for TRGV6
No Data Available

Interacting Proteins for TRGV6 Gene

Gene Ontology (GO) - Biological Process for TRGV6 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRGV6 Gene

Drugs & Compounds for TRGV6 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for TRGV6 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for TRGV6 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRGV6 Gene

No ASD Table

Relevant External Links for TRGV6 Gene

GeneLoc Exon Structure for
TRGV6
ECgene alternative splicing isoforms for
TRGV6

Expression for TRGV6 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TRGV6 Gene

mRNA expression in normal human tissues for TRGV6 Gene
mRNA expression by GTEx for TRGV6 Gene

mRNA differential expression in normal tissues according to GTEx for TRGV6 Gene

This gene is overexpressed in Testis (x18.2), Prostate (x8.1), Spleen (x6.8), Whole Blood (x5.4), and Lung (x4.0).

NURSA nuclear receptor signaling pathways regulating expression of TRGV6 Gene:

TRGV6
genes like me logo Genes that share expression patterns with TRGV6: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRGV6 Gene

Orthologs for TRGV6 Gene

Evolution for TRGV6 Gene

ENSEMBL:
Gene Tree for TRGV6 (if available)
TreeFam:
Gene Tree for TRGV6 (if available)

No data available for Orthologs for TRGV6 Gene

Paralogs for TRGV6 Gene

No data available for Paralogs for TRGV6 Gene

Variants for TRGV6 Gene

Additional Variant Information for TRGV6 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRGV6

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRGV6 Gene

Disorders for TRGV6 Gene

No disorders were found for TRGV6 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRGV6 Gene

Publications for TRGV6 Gene

  1. Variable region genes in the human T-cell rearranging gamma (TRG) locus: V-J junction and homology with the mouse genes. (PMID: 2969332) Huck S … Lefranc MP (The EMBO journal 1988) 2 3 58
  2. Diversity and rearrangement of the human T cell rearranging gamma genes: nine germ-line variable genes belonging to two subgroups. (PMID: 2938743) LeFranc MP … Rabbitts TH (Cell 1986) 2 3 58
  3. The human T-cell receptor gamma (TRG) genes. (PMID: 2527426) Lefranc MP … Rabbitts TH (Trends in biochemical sciences 1989) 3 58

Products for TRGV6 Gene

Sources for TRGV6 Gene

Content
Loading form....