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Aliases for TRGV5P Gene

Aliases for TRGV5P Gene

  • T Cell Receptor Gamma Variable 5P (Pseudogene) 2 3 5
  • T-Cell Receptor, Gamma, Variable Region V5P (Pseudogene) 2 3
  • T Cell Receptor Gamma Variable 5 Pseudogene 2 3
  • T Cell Receptor Gamma Variable 5P Pseudogene 2
  • T Cell Receptor Gamma Variable 5P 2
  • TCRGV5P 3
  • V1S5P 3

External Ids for TRGV5P Gene

Previous HGNC Symbols for TRGV5P Gene

  • TCRGV5P

Previous GeneCards Identifiers for TRGV5P Gene

  • GC07U990110
  • GC07M038091
  • GC07M038125
  • GC07M038157
  • GC07M038352
  • GC07M038385
  • GC07M038268
  • GC07M038386
  • GC07M038392
  • GC07M038429
  • GC07M038676
  • GC07M038904
  • GC07M039133
  • GC07M039364
  • GC07M038452
  • GC07M038460
  • GC07M038474
  • GC07M038486

Summaries for TRGV5P Gene

GeneCards Summary for TRGV5P Gene

TRGV5P (T Cell Receptor Gamma Variable 5P (Pseudogene)) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRGV5P Gene

Genomics for TRGV5P Gene

Regulatory Elements for TRGV5P Gene

Enhancers for TRGV5P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07F038366 1 Ensembl ENCODE 34.1 -23.2 -23246 4.2 HDGF CTCF WRNIP1 NFXL1 YBX1 EBF1 RAD21 EED ZNF143 SMC3 TRGV4 TRGV5P TRGV3 AMPH TRGV1 RN7SL83P
GH07F038344 0.7 ENCODE 35 +0.3 318 2.3 HDGF ZNF263 CTCF ZNF654 SP3 TRIM22 RAD21 ZBTB48 ZNF366 IKZF1 TRGV4 TRGV5P TRGV3 AMPH TRGV6 TRG-AS1
GH07F038358 0.7 ENCODE 34.5 -13.7 -13702 2.2 ZNF263 CTCF ATF1 ZNF654 TRIM22 NFXL1 REST RAD21 IKZF1 ZNF143 TRGV4 TRGV5P TRGV5 TRGV3 AMPH GC07P038360
GH07F038362 0.7 ENCODE 30 -17.7 -17700 2.0 ZNF263 CTCF ZNF146 MTA2 TRIM22 NFXL1 EBF1 RAD21 ZNF366 IKZF1 TRGV4 TRGV5P TRGV3 GC07P038360 TRGV2
GH07F038334 1.3 FANTOM5 ENCODE 13.1 +9.2 9159 3.7 HDGF ATF1 PKNOX1 ARNT CREB3L1 ZNF48 ZNF2 ZNF143 ZNF263 SP3 ENSG00000272908 TRGV5 TRGV5P STARD3NL AMPH TRGV6 TRGV7
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TRGV5P on UCSC Golden Path with GeneCards custom track

Promoters for TRGV5P Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001891053 -801 201 ATF2
ENSR00001891054 -1401 200 ATF2

Genomic Location for TRGV5P Gene

Chromosome:
7
Start:
38,345,030 bp from pter
End:
38,345,499 bp from pter
Size:
470 bases
Orientation:
Minus strand

Genomic View for TRGV5P Gene

Genes around TRGV5P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRGV5P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRGV5P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRGV5P Gene

Proteins for TRGV5P Gene

Post-translational modifications for TRGV5P Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRGV5P Gene

Domains & Families for TRGV5P Gene

Gene Families for TRGV5P Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRGV5P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRGV5P Gene

Function for TRGV5P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRGV5P Gene

Localization for TRGV5P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TRGV5P Gene

Pathways & Interactions for TRGV5P Gene

SuperPathways for TRGV5P Gene

No Data Available

Interacting Proteins for TRGV5P Gene

Gene Ontology (GO) - Biological Process for TRGV5P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRGV5P Gene

Transcripts for TRGV5P Gene

mRNA/cDNA for TRGV5P Gene

Alternative Splicing Database (ASD) splice patterns (SP) for TRGV5P Gene

No ASD Table

Relevant External Links for TRGV5P Gene

GeneLoc Exon Structure for
TRGV5P
ECgene alternative splicing isoforms for
TRGV5P

Expression for TRGV5P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TRGV5P Gene

mRNA differential expression in normal tissues according to GTEx for TRGV5P Gene

This gene is overexpressed in Spleen (x8.3) and Whole Blood (x7.0).

NURSA nuclear receptor signaling pathways regulating expression of TRGV5P Gene:

TRGV5P
genes like me logo Genes that share expression patterns with TRGV5P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for TRGV5P Gene

Orthologs for TRGV5P Gene

Evolution for TRGV5P Gene

ENSEMBL:
Gene Tree for TRGV5P (if available)
TreeFam:
Gene Tree for TRGV5P (if available)

No data available for Orthologs for TRGV5P Gene

Paralogs for TRGV5P Gene

No data available for Paralogs for TRGV5P Gene

Variants for TRGV5P Gene

Relevant External Links for TRGV5P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRGV5P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRGV5P Gene

Disorders for TRGV5P Gene

No disorders were found for TRGV5P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRGV5P Gene

Publications for TRGV5P Gene

  1. Variable region genes in the human T-cell rearranging gamma (TRG) locus: V-J junction and homology with the mouse genes. (PMID: 2969332) Huck S. … Lefranc M.P. (EMBO J. 1988) 2 3 64
  2. Diversity and rearrangement of the human T cell rearranging gamma genes: nine germ-line variable genes belonging to two subgroups. (PMID: 2938743) LeFranc M.P. … Rabbitts T.H. (Cell 1986) 2 3 64
  3. The human T-cell receptor gamma (TRG) genes. (PMID: 2527426) Lefranc M.P. … Rabbitts T.H. (Trends Biochem. Sci. 1989) 3 64

Products for TRGV5P Gene

Sources for TRGV5P Gene

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