Aliases for TRGV5 Gene
Aliases for TRGV5 Gene
External Ids for TRGV5 Gene
- HGNC: 12290
- Entrez Gene: 6978
- Ensembl: ENSG00000211697
Previous HGNC Symbols for TRGV5 Gene
- TCRGV5
Previous GeneCards Identifiers for TRGV5 Gene
- GC07U990109
- GC07M038095
- GC07M038129
- GC07M038162
- GC07M038351
- GC07M038388
- GC07M038426
- GC07M038451
- GC07M038459
- GC07M038473
- GC07M038485
- GC07M038497
Summaries for TRGV5 Gene
GeneCards Summary for TRGV5 Gene
TRGV5 (T-Cell Receptor Gamma Variable 5) is a Protein Coding gene. An important paralog of this gene is TRGV3.
No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRGV5 Gene
Genomics for TRGV5 Gene
Regulatory Elements for TRGV5 Gene
Enhancers for TRGV5 Gene
| GeneHancer Identifier | Enhancer Score | Enhancer Sources | Gene-Enhancer Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites within enhancer | Gene Targets for Enhancer |
|---|---|---|---|---|---|---|---|---|
| GH07G038334 | 1.8 | FANTOM5 Ensembl ENCODE dbSUPER | 13.3 | +13.7 | 13682 | 3.7 | HDGF PKNOX1 CREB3L1 ARNT ZNF2 ZNF143 KLF13 ZNF263 SP3 JUNB | ENSG00000272908 TRGV5 TRGV5P STARD3NL AMPH TRGV6 TRGV7 |
| GH07G038357 | 1.2 | Ensembl ENCODE dbSUPER | 12.1 | -9.7 | -9679 | 3.8 | CTCF ATF1 RB1 BACH1 NFXL1 RAD21 ZBTB48 EGR1 ZNF143 SMC3 | TRGV4 TRGV5P TRGV5 TRGV3 AMPH TRGV7 GC07P038360 |
| GH07G038394 | 0.8 | FANTOM5 Ensembl | 13.2 | -44.9 | -44916 | 1.1 | CTCF PBX2 RAD21 | AMPH TRGV5 STARD3NL TARP TRGV1 RN7SL83P |
| GH07G038307 | 1.5 | FANTOM5 ENCODE dbSUPER | 5.1 | +40.2 | 40205 | 4.4 | HDGF ATF1 CREB3L1 YY1 GLIS2 ZNF143 KDM4B ZNF263 SP3 ZNF592 | TRGV9 STARD3NL TRGV5 TARP LOC103689914 |
| GH07G038303 | 1 | ENCODE dbSUPER | 5.3 | +44.4 | 44390 | 3.4 | CTCF NFXL1 ZNF384 ZBTB40 RAD21 TCF12 ZNF366 ZBTB48 EGR1 EED | ENSG00000272908 TRGV5P TRGV4 TRGV5 TRGV9 TRGV3 TARP TRGV10 |
- Elite enhancer and/or Elite enhancer-gene association
Download GeneHancer data dump
Enhancers around TRGV5 on UCSC Golden Path with GeneCards custom track
Regulatory Element Products
Genomic Location for TRGV5 Gene
- Chromosome:
- 7
- Start:
- 38,349,355 bp from pter
- End:
- 38,350,022 bp from pter
- Size:
- 668 bases
- Orientation:
- Minus strand
Genomic View for TRGV5 Gene
Genes around TRGV5 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 7p14.1 by Ensembl
- 7p14.1 by Entrez Gene
- 7p14.1 by HGNC
TRGV5 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for TRGV5 Gene
Proteins for TRGV5 Gene
-
Protein details for TRGV5 Gene (UniProtKB/TrEMBL)
- Protein Symbol:
- A0A0B4J1U4
- Recommended name:
- T-cell receptor gamma variable 5
- Protein Accession:
- A0A0B4J1U4
Protein attributes for TRGV5 Gene
- Size:
- 118 amino acids
- Molecular mass:
- 13601 Da
- Quaternary structure:
- No Data Available
Post-translational modifications for TRGV5 Gene
No Post-translational modifications
Other Protein References for TRGV5 Gene
- ENSEMBL proteins:
Antibody Products
- GeneTex Cacna1e antibody for TRGV5
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for TRGV5
- Origene Custom Protein Services for TRGV5
- Search GeneTex for Proteins for TRGV5
No data available for DME Specific Peptides for TRGV5 Gene
Domains & Families for TRGV5 Gene
Gene Families for TRGV5 Gene
Protein Domains for TRGV5 Gene
- InterPro:
- ProtoNet:
Graphical View of Domain Structure for InterPro Entry
No data available for Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRGV5 Gene
Function for TRGV5 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Cyagen custom Knockout/knockin (KOKI) mouse models for TRGV5
-
- Search ViGene Biosciences for TRGV5
CRISPR Products
- Browse CRISPR knockouts for TRGV5
miRNA Products
- Search ViGene Biosciences for TRGV5
Inhibitory RNA Products
- Search ViGene Biosciences for TRGV5
Clone Products
- GenScript: Custom all cDNA clones Services for TRGV5
- VectorBuilder custom plasmid, inducible vectors for TRGV5
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for TRGV5
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRGV5 Gene
Localization for TRGV5 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TRGV5 Gene
Transcripts for TRGV5 Gene
mRNA/cDNA for TRGV5 Gene
- (359) Selected AceView cDNA sequences:
- (1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
CRISPR Products
- Browse CRISPR knockouts for TRGV5
miRNA Products
- Search ViGene Biosciences for TRGV5
Inhibitory RNA Products
- Search ViGene Biosciences for TRGV5
Clone Products
- GenScript: Custom all cDNA clones Services for TRGV5
- VectorBuilder custom plasmid, inducible vectors for TRGV5
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for TRGV5
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Expression for TRGV5 Gene
mRNA differential expression in normal tissues according to GTEx for TRGV5 Gene
This gene is overexpressed in Whole Blood (x12.1) and Spleen (x5.4).
NURSA nuclear receptor signaling pathways regulating expression of TRGV5 Gene:
TRGV5Primer Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRGV5 Gene
Orthologs for TRGV5 Gene
This gene was present in the common ancestor of mammals.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| cow (Bos Taurus) |
Mammalia | -- 35 |
|
OneToMany | |
| platypus (Ornithorhynchus anatinus) |
Mammalia | -- 35 |
|
ManyToMany | |
| -- 35 |
|
ManyToMany | |||
| -- 35 |
|
ManyToMany | |||
| -- 35 |
|
ManyToMany | |||
| -- 35 |
|
ManyToMany | |||
| -- 35 |
|
ManyToMany | |||
| -- 35 |
|
ManyToMany | |||
| -- 35 |
|
ManyToMany |
- Species where no ortholog for TRGV5 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- baker's yeast (Saccharomyces cerevisiae)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- chicken (Gallus gallus)
- chimpanzee (Pan troglodytes)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- dog (Canis familiaris)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- fruit fly (Drosophila melanogaster)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- lizard (Anolis carolinensis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- mouse (Mus musculus)
- oppossum (Monodelphis domestica)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- rainbow trout (Oncorhynchus mykiss)
- rat (Rattus norvegicus)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea squirt (Ciona intestinalis)
- sea squirt (Ciona savignyi)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- tropical clawed frog (Silurana tropicalis)
- wheat (Triticum aestivum)
- worm (Caenorhabditis elegans)
- zebrafish (Danio rerio)
Paralogs for TRGV5 Gene
Variants for TRGV5 Gene
Relevant External Links for TRGV5 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- TRGV5
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRGV5 Gene
Disorders for TRGV5 Gene
Relevant External Links for TRGV5
- Atlas of Genetics and Cytogenetics in Oncology and Haematology:
- TRGV5
No disorders were found for TRGV5 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TRGV5 Gene
Publications for TRGV5 Gene
- Variable region genes in the human T-cell rearranging gamma (TRG) locus: V-J junction and homology with the mouse genes. (PMID: 2969332) Huck S. … Lefranc M.P. (EMBO J. 1988) 2 3 64
- The V gamma locus of the human T cell receptor gamma gene. Repertoire polymorphism of the first variable gene segment subgroup. (PMID: 2902186) Font M.P. … Sigaux F. (J. Exp. Med. 1988) 2 3 64
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64
- The human T-cell receptor gamma (TRG) genes. (PMID: 2527426) Lefranc M.P. … Rabbitts T.H. (Trends Biochem. Sci. 1989) 3 64
- Structure of the gamma/delta T cell receptor of a human thymocyte clone. (PMID: 2844954) Okada A. … Alt F.W. (J. Exp. Med. 1988) 3 64
Products for TRGV5 Gene
- Browse R&D Systems for Antibodies
- Browse R&D Systems for Human Recombinant Proteins
- Browse R&D Systems for biochemical assays
- Browse Primary Antibodies
- Browse Proteins and Enzymes
- Browse ELISAs
- Browse Activity Assays
- Browse cDNA Clones
- Browse Cell Culture Products
- Browse Cell Selection and Detection Kits
- Browse DNA Damage and Repair Kits
- Browse ELISpot/FluoroSpot Kits and Development Modules
- Browse Flow Cytometry Kits
- Browse Immunoprecipitation Assays
- Browse Luminex Assays
- Browse Peptides
- Browse Proteome Profiler Antibody Arrays
- Browse Small Molecules
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for TRGV5
- Origene Custom Protein Services for TRGV5
- Browse OriGene Inhibitory RNA Products For TRGV5
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for TRGV5
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For TRGV5
- GenScript: Custom all cDNA clones Services for TRGV5
- GenScript Custom Purified and Recombinant Proteins Services for TRGV5
- GenScript Custom Assay Services for TRGV5
- GenScript Custom overexpressing Cell Line Services for TRGV5
- Browse GenScript CRISPR for TRGV5
- Design optimal peptide antigens
- CloneReady with Over 120,000 Genes
- Gene Synthesis: Any Gene in Any Vector
- Vector-based siRNA and miRNA, Ready for Transfection
- Gene Mutant Library, Variants up to 10^11
- Plasmid Preparation
- GenScript Custom Peptide Services for TRGV5
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Proteins
- Sino Biological Antibodies
- Sino Biological ELISA Kits and Pair Sets
- Sino Biological Cell Lysates
- Sino Biological qPCR Primers
- Sino Biological CRO Services for Proteins, Antibodies and Genes
- Sino Biological Transfection Reagents
- Novus Biologicals
- Novus Biologicals Tissue Microarrays
- GeneTex Cacna1e antibody for TRGV5
- Search GeneTex for Proteins for TRGV5
- Search ViGene Biosciences for TRGV5
- Cyagen custom Knockout/knockin (KOKI) mouse models for TRGV5
- VectorBuilder custom plasmid, inducible vectors for TRGV5
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for TRGV5
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Sources for TRGV5 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) RNAdb
- (29) ASD
- (30) ECgene
- (31) GeneAnnot
- (32) CGAP SAGE
- (33) SOURCE
- (34) HomoloGene
- (35) PanEnsembl
- (36) euGenes
- (37) SGD
- (38) FlyBase
- (39) WormBase
- (40) Pseudogene
- (41) DGV
- (42) dbSNP
- (43) GenAtlas
- (44) GeneTests
- (45) HGMD
- (46) GAD
- (47) LSDB
- (48) BGMUT
- (49) HuGE
- (50) eBioscience
- (51) Atlas
- (52) Cell Signaling Technology
- (53) GenBank
- (54) H-invDB
- (55) HORDE
- (56) HUGE
- (57) IMGT
- (58) Leiden
- (59) MILLIPORE
- (60) miRBase
- (61) DME
- (62) NCBI
- (63) OriGene
- (64) PubMed
- (65) R&D Systems
- (66) TGDB
- (67) Tocris
- (68) Abcam
- (69) Novus
- (70) ProSpec
- (71) Sino Biological
- (72) GenScript
- (73) Qiagen
- (74) Cloud-Clone Corp.
- (75) Enzo Life Sciences
- (76) OCA
- (77) Proteopedia
- (78) MOPED
- (79) SPIRE
- (80) neXtProt
- (81) Reactome
- (82) GeneGo (Thomson Reuters)
- (83) fRNAdb
- (84) DISEASES
- (85) SIMAP
- (86) GenomeRNAi
- (87) LifeMap
- (88) miRTarBase
- (89) MalaCards
- (90) Invitrogen
- (91) BitterDB
- (92) Vector BioLabs
- (93) ESI-BIO
- (94) RefSeq
- (95) BioSystems
- (96) MaxQB
- (97) IUPHAR
- (98) BioGPS
- (99) Illumina
- (100) COMPARTMENTS
- (101) HOMER
- (102) PaxDb
- (103) ApexBio
- (104) Addgene
- (105) antibodies-online
- (106) CYP
- (107) NONCODE
- (108) SwitchGear Genomics
- (109) TreeFam
- (110) PathCards
- (111) GeneReviews
- (112) GeneTex
- (113) Taconic Biosciences
- (114) GTEx
- (115) ProteomicsDB
- (116) SCBT
- (117) DGIdb
- (118) ClinicalTrials
- (119) FDA Approved Drugs
- (120) RVIS
- (121) SIGNOR
- (122) diseasecard
- (123) NIH Rare Diseases
- (124) Orphanet
- (125) UMLS
- (126) GTR
- (127) Disease Ontology
- (128) Genetics Home Reference
- (129) MeSH
- (130) MedlinePlus
- (131) CDC
- (132) NINDS
- (133) NCBI Bookshelf
- (134) ClinVar
- (135) Gene Damage Index
- (136) ViGene Biosciences
- (137) HPO
- (138) UDN
- (139) VISTA
- (140) FANTOM5
- (141) ENCODE
- (142) ProSci
- (143) Horizon
- (144) NURSA
- (145) IID
- (146) Cyagen
- (147) VectorBuilder
- (148) SNPedia
- (149) BRCA Exchange
- (150) St John's Lab
- (151) CIViC
- (152) ProteoGenix
- (153) dbSUPER
- (154) TISSUES
- (155) Gene ORGANizer