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Aliases for TRGV5 Gene

Aliases for TRGV5 Gene

  • T Cell Receptor Gamma Variable 5 2 3
  • T-Cell Receptor, Gamma, Variable Region V5 3
  • T-Cell Gamma Precursor Protein 3
  • Variable Region V5 2
  • T-Cell Receptor 2
  • TCRGV5 3
  • Gamma 2
  • V1S5 3

External Ids for TRGV5 Gene

Previous HGNC Symbols for TRGV5 Gene

  • TCRGV5

Previous GeneCards Identifiers for TRGV5 Gene

  • GC07U990109
  • GC07M038095
  • GC07M038129
  • GC07M038162
  • GC07M038351
  • GC07M038388
  • GC07M038426

Summaries for TRGV5 Gene

GeneCards Summary for TRGV5 Gene

TRGV5 (T Cell Receptor Gamma Variable 5) is a Protein Coding gene. An important paralog of this gene is TRGV3.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRGV5 Gene

Genomics for TRGV5 Gene

Genomic Location for TRGV5 Gene

Start:
38,343,894 bp from pter
End:
38,350,022 bp from pter
Size:
6,129 bases
Orientation:
Minus strand

Genomic View for TRGV5 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TRGV5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRGV5 Gene

No data available for Regulatory Elements for TRGV5 Gene

Proteins for TRGV5 Gene

  • Protein details for TRGV5 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A087X039
    Recommended name:
    Protein TRGV5
    Protein Accession:
    A0A087X039
    Secondary Accessions:

    Protein attributes for TRGV5 Gene

    Size:
    119 amino acids
    Molecular mass:
    13739 Da
    Quaternary structure:
    No Data Available
  • Protein details for TRGV5 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A0B4J1U4
    Recommended name:
    Protein TRGV5
    Protein Accession:
    A0A0B4J1U4
    Secondary Accessions:

    Protein attributes for TRGV5 Gene

    Size:
    118 amino acids
    Molecular mass:
    13601 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TRGV5 Gene

Proteomics data for TRGV5 Gene at MOPED

Post-translational modifications for TRGV5 Gene

No Post-translational modifications

Other Protein References for TRGV5 Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for TRGV5 Gene

Domains for TRGV5 Gene

Gene Families for TRGV5 Gene

HGNC:
  • TRG :T cell receptors / TRG locus

Protein Domains for TRGV5 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRGV5: view

No data available for Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRGV5 Gene

Function for TRGV5 Gene

Gene Ontology (GO) - Molecular Function for TRGV5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding --
genes like me logo Genes that share ontologies with TRGV5: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for TRGV5 Gene

Localization for TRGV5 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for TRGV5 Gene COMPARTMENTS Subcellular localization image for TRGV5 gene
Compartment Confidence
extracellular 3

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for TRGV5 Gene

Pathways for TRGV5 Gene

SuperPathways for TRGV5 Gene

No Data Available

Interacting Proteins for TRGV5 Gene

Gene Ontology (GO) - Biological Process for TRGV5 Gene

None

No data available for Pathways by source for TRGV5 Gene

Transcripts for TRGV5 Gene

mRNA/cDNA for TRGV5 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for TRGV5 Gene

No ASD Table

Relevant External Links for TRGV5 Gene

GeneLoc Exon Structure for
TRGV5
ECgene alternative splicing isoforms for
TRGV5

Expression for TRGV5 Gene

mRNA expression in normal human tissues for TRGV5 Gene

mRNA differential expression in normal tissues according to GTEx for TRGV5 Gene

This gene is overexpressed in Whole Blood (12.1) and Spleen (5.4).
genes like me logo Genes that share expressions with TRGV5: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for TRGV5 Gene

Orthologs for TRGV5 Gene

This gene was present in the common ancestor of mammals.

Orthologs for TRGV5 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia -- 36
  • 53 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 36 (a)
ManyToMany
-- 36
  • 41 (a)
ManyToMany
-- 36
  • 24 (a)
ManyToMany
-- 36
  • 31 (a)
ManyToMany
-- 36
  • 34 (a)
ManyToMany
-- 36
  • 32 (a)
ManyToMany
-- 36
  • 39 (a)
ManyToMany
-- 36
  • 40 (a)
ManyToMany
Species with no ortholog for TRGV5:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for TRGV5 Gene

ENSEMBL:
Gene Tree for TRGV5 (if available)
TreeFam:
Gene Tree for TRGV5 (if available)

Paralogs for TRGV5 Gene

Paralogs for TRGV5 Gene

genes like me logo Genes that share paralogs with TRGV5: view

Variants for TRGV5 Gene

Relevant External Links for TRGV5 Gene

HapMap Linkage Disequilibrium report
TRGV5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar and Structural Variations from Database of Genomic Variants (DGV) for TRGV5 Gene

Disorders for TRGV5 Gene

No disorders were found for TRGV5 Gene.

No data available for UniProtKB/Swiss-Prot for TRGV5 Gene

Publications for TRGV5 Gene

  1. The V gamma locus of the human T cell receptor gamma gene. Repertoire polymorphism of the first variable gene segment subgroup. (PMID: 2902186) Font M.P. … Sigaux F. (J. Exp. Med. 1988) 2 3
  2. Variable region genes in the human T-cell rearranging gamma (TRG) locus: V-J junction and homology with the mouse genes. (PMID: 2969332) Huck S. … Lefranc M.P. (EMBO J. 1988) 2 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  4. The human T-cell receptor gamma (TRG) genes. (PMID: 2527426) Lefranc M.P. … Rabbitts T.H. (Trends Biochem. Sci. 1989) 3
  5. Structure of the gamma/delta T cell receptor of a human thymocyte clone. (PMID: 2844954) Okada A. … Alt F.W. (J. Exp. Med. 1988) 3

Products for TRGV5 Gene

Sources for TRGV5 Gene

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