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Aliases for TRGV1 Gene

Aliases for TRGV1 Gene

  • T Cell Receptor Gamma Variable 1 (Non-Functional) 2 3 5
  • T Cell Receptor Gamma Variable 1 Pseudogene 2 3
  • T-Cell Receptor, Gamma, Variable Region V1 (Pseudogene) 3
  • T Cell Receptor Gamma Variable 1 2
  • TCRGV1 3
  • V1S1P 3

External Ids for TRGV1 Gene

Previous HGNC Symbols for TRGV1 Gene

  • TCRGV1

Previous GeneCards Identifiers for TRGV1 Gene

  • GC07U990105
  • GC07M038105
  • GC07M038147
  • GC07M038180
  • GC07M038373
  • GC07M038408
  • GC07M038291
  • GC07M038412
  • GC07M038413
  • GC07M038433
  • GC07M038678
  • GC07M038906
  • GC07M039135
  • GC07M039366
  • GC07M038454
  • GC07M038467
  • GC07M038480
  • GC07M038491

Summaries for TRGV1 Gene

GeneCards Summary for TRGV1 Gene

TRGV1 (T Cell Receptor Gamma Variable 1 (Non-Functional)) is a Pseudogene. An important paralog of this gene is TRGV4.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRGV1 Gene

Genomics for TRGV1 Gene

Regulatory Elements for TRGV1 Gene

Enhancers for TRGV1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07F038366 1 Ensembl ENCODE 0.8 -0.6 -576 4.2 HDGF CTCF WRNIP1 NFXL1 YBX1 EBF1 RAD21 EED ZNF143 SMC3 TRGV4 TRGV5P TRGV3 AMPH TRGV1 RN7SL83P
GH07F038374 0.7 ENCODE 0.4 -6.4 -6426 0.2 HDAC1 CTCF RAD21 GATA2 SMARCE1 RNF2 L3MBTL2 BHLHE40 TRIM22 JUNB NME8 TRGV1 RN7SL83P
GH07F038393 0.8 FANTOM5 Ensembl 0.3 -26.5 -26469 1.7 CTCF PBX2 RAD21 AMPH TRGV5 STARD3NL TARP TRGV1 RN7SL83P
GH07F038398 0.6 ENCODE 0.3 -30.7 -30747 0.2 CTCF ATF1 ZNF654 TRIM22 REST RAD21 ZNF143 SMC3 CREM TRGV5 TRGV1 RN7SL83P
GH07F038372 0.2 ENCODE 0.8 -4.3 -4326 0.1 TRGV4 TRGV1 RN7SL83P
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TRGV1 on UCSC Golden Path with GeneCards custom track

Genomic Location for TRGV1 Gene

Chromosome:
7
Start:
38,367,586 bp from pter
End:
38,368,169 bp from pter
Size:
584 bases
Orientation:
Minus strand

Genomic View for TRGV1 Gene

Genes around TRGV1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRGV1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRGV1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRGV1 Gene

Proteins for TRGV1 Gene

  • Protein details for TRGV1 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A0A0MS02
    Recommended name:
    Protein TRGV1
    Protein Accession:
    A0A0A0MS02

    Protein attributes for TRGV1 Gene

    Size:
    117 amino acids
    Molecular mass:
    13248 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TRGV1 Gene

Post-translational modifications for TRGV1 Gene

No Post-translational modifications

Other Protein References for TRGV1 Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for TRGV1 Gene

Domains & Families for TRGV1 Gene

Gene Families for TRGV1 Gene

Protein Domains for TRGV1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRGV1: view

No data available for Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRGV1 Gene

Function for TRGV1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRGV1 Gene

Localization for TRGV1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TRGV1 Gene

Pathways & Interactions for TRGV1 Gene

SuperPathways for TRGV1 Gene

No Data Available

Interacting Proteins for TRGV1 Gene

Gene Ontology (GO) - Biological Process for TRGV1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRGV1 Gene

Transcripts for TRGV1 Gene

mRNA/cDNA for TRGV1 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for TRGV1 Gene

No ASD Table

Relevant External Links for TRGV1 Gene

GeneLoc Exon Structure for
TRGV1
ECgene alternative splicing isoforms for
TRGV1

Expression for TRGV1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TRGV1 Gene

mRNA differential expression in normal tissues according to GTEx for TRGV1 Gene

This gene is overexpressed in Spleen (x9.6) and Whole Blood (x6.7).

NURSA nuclear receptor signaling pathways regulating expression of TRGV1 Gene:

TRGV1
genes like me logo Genes that share expression patterns with TRGV1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for TRGV1 Gene

Orthologs for TRGV1 Gene

This gene was present in the common ancestor of mammals.

Orthologs for TRGV1 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia -- 35
  • 51 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 35
  • 40 (a)
ManyToMany
-- 35
  • 39 (a)
ManyToMany
-- 35
  • 38 (a)
ManyToMany
-- 35
  • 36 (a)
ManyToMany
-- 35
  • 35 (a)
ManyToMany
-- 35
  • 32 (a)
ManyToMany
-- 35
  • 31 (a)
ManyToMany
-- 35
  • 24 (a)
ManyToMany
Species where no ortholog for TRGV1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for TRGV1 Gene

ENSEMBL:
Gene Tree for TRGV1 (if available)
TreeFam:
Gene Tree for TRGV1 (if available)

Paralogs for TRGV1 Gene

Paralogs for TRGV1 Gene

genes like me logo Genes that share paralogs with TRGV1: view

Variants for TRGV1 Gene

Relevant External Links for TRGV1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRGV1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRGV1 Gene

Disorders for TRGV1 Gene

No disorders were found for TRGV1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRGV1 Gene

Publications for TRGV1 Gene

  1. Variable region genes in the human T-cell rearranging gamma (TRG) locus: V-J junction and homology with the mouse genes. (PMID: 2969332) Huck S. … Lefranc M.P. (EMBO J. 1988) 2 3 64
  2. Diversity and rearrangement of the human T cell rearranging gamma genes: nine germ-line variable genes belonging to two subgroups. (PMID: 2938743) LeFranc M.P. … Rabbitts T.H. (Cell 1986) 2 3 64
  3. The human T cell receptor gamma genes are transcribed from TATA-less promoters containing a conserved heptamer sequence. (PMID: 1386651) Hettmann T. … Cohen A. (Mol. Immunol. 1992) 3 64
  4. The human T-cell receptor gamma (TRG) genes. (PMID: 2527426) Lefranc M.P. … Rabbitts T.H. (Trends Biochem. Sci. 1989) 3 64
  5. The promoter regions of the T-cell receptor V9 gamma (TRGV9) and V2 delta (TRDV2) genes display short direct repeats but no TATA box. (PMID: 2806544) Dariavach P. … Lefranc M.P. (FEBS Lett. 1989) 3 64

Products for TRGV1 Gene

Sources for TRGV1 Gene

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