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Aliases for TRGV1 Gene

Aliases for TRGV1 Gene

  • T-Cell Receptor Gamma Variable 1 (Non-Functional) 2 5
  • T Cell Receptor Gamma Variable 1 (Non-Functional) 2 3
  • T Cell Receptor Gamma Variable 1 Pseudogene 2 3
  • T-Cell Receptor, Gamma, Variable Region V1 (Pseudogene) 3
  • T Cell Receptor Gamma Variable 1 2
  • TCRGV1 3
  • V1S1P 3

External Ids for TRGV1 Gene

Previous HGNC Symbols for TRGV1 Gene

  • TCRGV1

Previous GeneCards Identifiers for TRGV1 Gene

  • GC07U990105
  • GC07M038105
  • GC07M038147
  • GC07M038180
  • GC07M038373
  • GC07M038408
  • GC07M038291
  • GC07M038412
  • GC07M038413
  • GC07M038433
  • GC07M038678
  • GC07M038906
  • GC07M039135
  • GC07M039366
  • GC07M038454
  • GC07M038467
  • GC07M038480
  • GC07M038491
  • GC07M038505
  • GC07M038517

Summaries for TRGV1 Gene

GeneCards Summary for TRGV1 Gene

TRGV1 (T-Cell Receptor Gamma Variable 1 (Non-Functional)) is a Pseudogene. An important paralog of this gene is TRGV4.

Additional gene information for TRGV1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRGV1 Gene

Genomics for TRGV1 Gene

Regulatory Elements for TRGV1 Gene

Enhancers for TRGV1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07H038366 1.3 Ensembl ENCODE dbSUPER 0.7 -0.6 -576 4 HDGF CTCF RB1 NFXL1 YBX1 RAD21 RFX5 CTBP1 EED SMC3 TRGV4 TRGV5P TRGV3 AMPH TRGV1 RN7SL83P
GH07H038372 0.5 ENCODE dbSUPER 0.7 -4.3 -4326 0 TRGV4 TRGV1 RN7SL83P
GH07H038374 0.8 ENCODE dbSUPER 0.4 -6.4 -6426 0 CTCF TRIM22 JUNB BATF RAD21 TRGV1 RN7SL83P
GH07H038398 0.6 ENCODE 0.3 -30.7 -30747 0 CTCF ZNF654 ATF1 TRIM22 REST RAD21 CREB1 ZNF143 SMC3 CREM TRGV5 TRGV1 RN7SL83P
GH07H038394 0.5 FANTOM5 Ensembl 0.3 -26.8 -26769 1 AMPH TRGV5 STARD3NL TARP TRGV1 RN7SL83P
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TRGV1 on UCSC Golden Path with GeneCards custom track

Genomic Location for TRGV1 Gene

Chromosome:
7
Start:
38,367,586 bp from pter
End:
38,368,169 bp from pter
Size:
584 bases
Orientation:
Minus strand

Genomic View for TRGV1 Gene

Genes around TRGV1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRGV1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRGV1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRGV1 Gene

Proteins for TRGV1 Gene

  • Protein details for TRGV1 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A0A0MS02
    Recommended name:
    T-cell receptor gamma variable 1 (non-functional)
    Protein Accession:
    A0A0A0MS02

    Protein attributes for TRGV1 Gene

    Size:
    117 amino acids
    Molecular mass:
    13248 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TRGV1 Gene

Post-translational modifications for TRGV1 Gene

No Post-translational modifications

Other Protein References for TRGV1 Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for TRGV1 Gene

Domains & Families for TRGV1 Gene

Gene Families for TRGV1 Gene

Protein Domains for TRGV1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRGV1: view

No data available for Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRGV1 Gene

Function for TRGV1 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for TRGV1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRGV1 Gene

Localization for TRGV1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRGV1 Gene

Pathways & Interactions for TRGV1 Gene

SuperPathways for TRGV1 Gene

No Data Available

Interacting Proteins for TRGV1 Gene

Gene Ontology (GO) - Biological Process for TRGV1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRGV1 Gene

Drugs & Compounds for TRGV1 Gene

No Compound Related Data Available

Transcripts for TRGV1 Gene

mRNA/cDNA for TRGV1 Gene

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for TRGV1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for TRGV1 Gene

No ASD Table

Relevant External Links for TRGV1 Gene

GeneLoc Exon Structure for
TRGV1
ECgene alternative splicing isoforms for
TRGV1

Expression for TRGV1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TRGV1 Gene

mRNA differential expression in normal tissues according to GTEx for TRGV1 Gene

This gene is overexpressed in Spleen (x9.6) and Whole Blood (x6.7).

NURSA nuclear receptor signaling pathways regulating expression of TRGV1 Gene:

TRGV1
genes like me logo Genes that share expression patterns with TRGV1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRGV1 Gene

Orthologs for TRGV1 Gene

This gene was present in the common ancestor of mammals.

Orthologs for TRGV1 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia -- 34
  • 51 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 34
  • 40 (a)
ManyToMany
-- 34
  • 39 (a)
ManyToMany
-- 34
  • 38 (a)
ManyToMany
-- 34
  • 36 (a)
ManyToMany
-- 34
  • 35 (a)
ManyToMany
-- 34
  • 32 (a)
ManyToMany
-- 34
  • 31 (a)
ManyToMany
-- 34
  • 24 (a)
ManyToMany
Species where no ortholog for TRGV1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for TRGV1 Gene

ENSEMBL:
Gene Tree for TRGV1 (if available)
TreeFam:
Gene Tree for TRGV1 (if available)

Paralogs for TRGV1 Gene

Paralogs for TRGV1 Gene

genes like me logo Genes that share paralogs with TRGV1: view

Variants for TRGV1 Gene

Relevant External Links for TRGV1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRGV1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRGV1 Gene

Disorders for TRGV1 Gene

No disorders were found for TRGV1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRGV1 Gene

Publications for TRGV1 Gene

  1. Variable region genes in the human T-cell rearranging gamma (TRG) locus: V-J junction and homology with the mouse genes. (PMID: 2969332) Huck S … Lefranc MP (The EMBO journal 1988) 2 3 60
  2. Diversity and rearrangement of the human T cell rearranging gamma genes: nine germ-line variable genes belonging to two subgroups. (PMID: 2938743) LeFranc MP … Rabbitts TH (Cell 1986) 2 3 60
  3. The human T cell receptor gamma genes are transcribed from TATA-less promoters containing a conserved heptamer sequence. (PMID: 1386651) Hettmann T … Cohen A (Molecular immunology 1992) 3 60
  4. The human T-cell receptor gamma (TRG) genes. (PMID: 2527426) Lefranc MP … Rabbitts TH (Trends in biochemical sciences 1989) 3 60
  5. The promoter regions of the T-cell receptor V9 gamma (TRGV9) and V2 delta (TRDV2) genes display short direct repeats but no TATA box. (PMID: 2806544) Dariavach P … Lefranc MP (FEBS letters 1989) 3 60

Products for TRGV1 Gene

Sources for TRGV1 Gene

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