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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

TRG@ Cluster

gene cluster   GIFtS: 21
GCID: GC07M038281

T cell receptor gamma locus


(Previous symbol: TCRG)
 Explore 53 diseases affiliated with
TRG@ via
MalaCards
our new
 Human Malady Compendium 
Biological research products
for TRG@    

Aliases
for TRG@ gene

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section
Aliases
T Cell Receptor Gamma Locus1 2
TCRG1 2 5
TRG1 2
T-Cell Antigen Receptor, Gamma Polypeptide2
T-Cell Rearranging Gene, Gamma2
T-Cell Receptor, Gamma Cluster2

External Ids:    HGNC: 122711   Entrez Gene: 69652   OMIM: 1869705   

Export aliases for TRG@ gene to outside databases

Previous GC identifers: GC07U990097 GC07M038247 GC07M038248 GC07M038319


Summaries
for TRG@ gene

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section
Entrez Gene summary for TRG@:
T cell receptors recognize foreign antigens which have been processed as small peptides and bound to major
histocompatibility complex (MHC) molecules at the surface of antigen presenting cells (APC). Each T cell receptor is a
dimer consisting of one alpha and one beta chain or one delta and one gamma chain. In a single cell, the T cell
receptor loci are rearranged and expressed in the order delta, gamma, beta, and alpha. If both delta and gamma
rearrangements produce functional chains, the cell expresses delta and gamma. If not, the cell proceeds to rearrange
the beta and alpha loci. This region represents the germline organization of the T cell receptor gamma locus. The
gamma locus includes V (variable), J (joining), and C (constant) segments. During T cell development, the gamma chain
is synthesized by a recombination event at the DNA level joining a V segment with a J segment; the C segment is later
joined by splicing at the RNA level. Recombination of many different V segments with several J segments provides a
wide range of antigen recognition. Additional diversity is attained by junctional diversity, resulting from the random
addition of nucleotides by terminal deoxynucleotidyltransferase. Several V segments of the gamma locus are known to be
incapable of encoding a protein and are considered pseudogenes. Somatic rearrangement of the gamma locus has been
observed in T cells derived from patients with T cell leukemia and ataxia telangiectasia. (provided by RefSeq, Jul
2008)

Gene Wiki entry for TRG@


Genomic Views
for TRG@ gene

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
 Regulatory elements:
   Search SABiosciences Regulatory transcription factor binding sites for TRG@
         Other transcription factors

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Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat TRG@


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 7p14   HGNC cytogenetic band: 7p14

TRG@ Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
TRG@ gene location

GeneLoc information about chromosome 7         GeneLoc Exon Structure

GeneLoc location for GC07M038281:  view genomic region     (about GC identifiers)

Start:
 38,279,625 bp from pter      End:
 38,407,656 bp from pter
Size:
 128,032 bases      Orientation:
 minus strand

1 alternative location:
Chr7-,CRA_TCAG 38,317,305-38,445,327     

Proteins
for TRG@ gene

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section
UniProtKB: --

Protein Domains /
Families
for TRG@ gene

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section
   --

Function
for TRG@ gene

(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
About This Section
miRNA
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Inhib. RNA
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In Situ Assay
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Animal Models:
     Mouse knock-outs for TRG@: Tcrgtm1Iku Tcrgtm1.1Dhr Tcrgtm1Ahay Tcrgtm1Scar Tcrgtm1.1Hish
     7 MGI mutant phenotypes (inferred from 7 alleles) (MGI details for Tcrg):
 cellular  digestive/alimentary  hematopoietic system  immune system  integument 
 no phenotypic analysis  normal 

TRG@ for phenotypes           About GeneDecksing


Pathways & Interactions
for TRG@ gene

(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
About This Section



Interactions:

    Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for TRG@

Drugs & Compounds
for TRG@ gene

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section

TRG@ for compounds           About GeneDecksing

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2 Novoseek chemical compound relationships for TRG@ gene    About this table
Compound   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
polyacrylamide 39.1 2 16404354 (1), 11407983 (1)
testosterone 0 1 12865322 (1)

Search CenterWatch for drugs/clinical trials and news about TRG@ 

Transcripts
for TRG@ gene

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from EMD Millipore,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
About This Section

miRNA
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Inhib. RNA
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Clone
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Primer
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GeneLoc Exon Structure


Expression
for TRG@ gene

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

TRG@ expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: --

Microarray
RNAseq (Illumina Body Map)
(100×FPKM)½
SAGE (Serial Analysis of Gene Expression)
About this image    SABiosciences Custom PCR Arrays for TRG@
Primer
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In Situ
Assay Products: 
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Orthologs
for TRG@ gene

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section
This gene was present in the common ancestor of human and mouse.

Orthologs for TRG@ gene from 1 species (see representative species )    About this table
Organism Taxonomic
classification		 Gene Description Human
Similarity		 Orthology
Type		 Details
mouse
(Mus musculus)		 Mammalia Tcrg5 T cell receptor gamma chain   --   13 -

Paralogs
for TRG@ gene

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
  --

Genomic Variants
for TRG@ gene

(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section

10/1317 NCBI SNPs in TRG@ are shown (see all 1317)     About this table
Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance		Chr 7 posSequence#AA
Chg		TypeMore#Allele
freq		PopTotal
sample		More
----------
rs1410656181,2
C,--38298763(+) GGAGA-/TTTATG 2 -- ds50010--------
rs770362621,2
C--38298853(+) TGTGCC/TGAACC 2 -- ds50010--------
rs1492078751,2
--38298961(+) TCACAC/TGGTAC 2 -- ds50010--------
rs1131380651,2
C,--38298962(+) CACACG/AGTACG 2 -- ds50011Minor allele frequency- A:0.50NA 2
rs1479228881,2
--38299016(+) CCGAAC/TGAATC 2 -- ds50010--------
rs1879742901,2
--38299102(+) AACCAC/TGATCT 2 -- ds50010--------
rs42622431,2
C,F,H,--38299200(+) TGGATG/ATTCAA 2 -- ds50015Minor allele frequency- A:0.15NS NA WA 236
rs1930364901,2
--38299212(+) TTGATA/GTCATC 2 -- ds50010--------
rs1470971171,2
--38299232(+) TACCAC/TGGACA 2 -- ds50010--------
rs715467021,2
C,--38299242(+) AAAAGC/TCAACT 2 -- ds50011Minor allele frequency- T:0.50NA 2

HapMap Linkage Disequilibrium report for TRG@ (38279625 - 38407656 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
      Database of Genomic Variants (DGV) variations for TRG@: --

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Disorders / Diseases
for TRG@ gene

(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Novoseek, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section
TRG@ for disorders           About GeneDecksing

OMIM gene information: 186970    OMIM disorders: --

20/53 diseases for TRG@ (see all 53):    About MalaCards
chronic active epstein-barr virus infection    subcutaneous panniculitis-like t-cell lymphoma    angioimmunoblastic lymphadenopathy with dysproteinemia    large granular lymphocyte leukemia
b-cell non-hodgkin lymphoma    leukemia    non-hodgkin lymphoma    t-cell large granular lymphocyte leukemia
t-cell leukemia    ataxia telangiectasia    west nile virus    lymphomatoid papulosis
mycosis fungoides    juvenile xanthogranuloma    anaplastic large cell lymphoma    lichen sclerosus
severe combined immunodeficiency    panniculitis    hodgkin's lymphoma    lymphocytic leukemia

10/17 Novoseek disease relationships for TRG@ gene (see all 17)    About this table

Disease   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
minimal residual disease 80.1 10 10914544 (2), 14687622 (2), 12970784 (1), 16247752 (1) (see all 7)
t-all 77.4 26 10914544 (8), 8289500 (3), 10025894 (2), 10516765 (2) (see all 10)
lymphoma t-cell peripheral 74.2 1 17431414 (1)
lymphoma t-cell 70.3 1 16266900 (1)
lymphoblastic leukemia acute 67.8 3 10025893 (1), 8289500 (1), 14687622 (1)
mycosis fungoides 57.7 3 15660892 (1), 18644018 (1), 8409516 (1)
lymphoma t-cell cutaneous 54.6 1 7769255 (1)
lymphoma 52.8 2 10890990 (1), 8199020 (1)
leukemia 51.8 4 10613353 (2), 10865981 (1), 7992601 (1)
lymphoid neoplasm 44.6 1 16266900 (1)

Genetic Association Database (GAD): TRG@
Human Genome Epidemiology (HuGE) Navigator: TRG@ (18 documents)

Export disorders for TRG@ gene to outside databases

Publications
for TRG@ gene

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
About This Section

PubMed articles for TRG@ gene, integrated from 9 sources (see all 152):
(articles sorted by number of sources associating them with TRG@)		    Utopia: connect your pdf to the dynamic
world of online information

  1. Molecular mapping of the human T cell receptor gamma (TRG) genes and linkage of the variable and constant regions. (PubMed id 2526744)1, 3 Lefranc M.P....Lefranc G. (1989)
  2. Characterization of an expressed CD3-associated Ti gamma-chain reveals C gamma domain polymorphism. (PubMed id 3102973)1, 3 Littman D.R....Weiss A. (1987)
  3. Physical map of an asthma susceptibility locus in 7p15-p14 and an association study of TCRG. (PubMed id 12357338)4, 9 Polvi A....Laitinen T. (2002)
  4. Characterization of the androgen-regulated prostate-specific T cell receptor gamma-chain alternate reading frame protein (TARP) promoter. (PubMed id 12865322)1, 9 Cheng W.S....Essand M. (2003)
  5. Combined TCRG and TCRA TREC analysis reveals increased peripheral T-lymphocyte but constant intra-thymic proliferative history upon ag eing. (PubMed id 23000520)1 van der Weerd K....Staal F.J. (2013)
  6. Antibody-dependent anti-cytomegalovirus activity of hu man gd T cells expressing CD16 (FcgRIIIa). (PubMed id 22180442)1 Couzi L....Dechanet-Merville J. (2012)
  7. Activated human gd T cells induce peptide-specific CD8 + T-cell responses to tumor-associated self-antigens. (PubMed id 21928126)1 Altvater B....Rossig C. (2012)
  8. Granulocyte colony-stimulating factor affects the dist ribution and clonality of TRGV and TRDV repertoire of T cells and graft-versus-h ost disease. (PubMed id 22171570)1 Xuan L....Liu Q. (2011)
  9. Nonhepatosplenic I^I' T-cell lymphomas represent a spec trum of aggressive cytotoxic T-cell lymphomas with a mainly extranodal presenta tion. (PubMed id 21753698)1 Garcia-Herrera A....Martinez A. (2011)
  10. An aggressive systemic juvenile xanthogranuloma clona lly related to a preceding T-cell acute lymphoblastic leukemia. (PubMed id 20848640)1 Perez-Becker R....Klapper W. (2011)

External Searches for TRG@ gene

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section
 ANDOR
Aliases
Disorders
Free Text  
  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

Genome Databases showing TRG@ gene

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section
Entrez Gene: 6965 HGNC: 12271 euGenes: HUgn6965 ECgene: TRG@ H-InvDB: TRG@

Other Databases showing TRG@ gene

(According to HUGE)
About This Section
   --

Specialized Databases showing TRG@ gene

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
NameDescription
PharmGKB entry for TRG@ Pharmacogenomics, SNPs, Pathways
ATLAS Chromosomes in Cancer entry for TRG@ Genetics and Cytogenetics in Oncology and Haematology
IMGT entry for TRG@ The international ImMunoGeneTics information system® specializing in Immunoglobulins (IG), T cell receptors (TR), Major Histocompatibility Complex (MHC) and related proteins of the immune system (RPI) of human and other vertebrate species.

Intellectual Property
for TRG@ gene

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
About This Section
Patent Information for TRG@ gene:
Search GeneIP for patents involving TRG@

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



Products
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Developed at the Crown Human Genome Center, Department of Molecular Genetics, the Weizmann Institute of Science

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