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TRG Gene

protein-coding   GIFtS: 17
GCID: GC07M038284

T Cell Receptor Gamma Locus


(Previous symbols: TCRG, TRG@)
  See related diseases
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
T Cell Receptor Gamma Locus1 2     T-Cell Receptor1
TCRG1 2     T-Cell Antigen Receptor, Gamma Polypeptide2
TRG@1 2     T-Cell Rearranging Gene, Gamma2
gamma1     T-Cell Receptor, Gamma Cluster2
Gamma Cluster1     H5
Gamma Polypeptide1     HCNGP5
T-Cell Antigen Receptor1     HTRP5
T-Cell Rearranging Gene1     SAP30BP5

External Ids:    HGNC: 122711   Entrez Gene: 69652   OMIM: 6102185   

Export aliases for TRG gene to outside databases


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Entrez Gene summary for TRG Gene:
T cell receptors recognize foreign antigens which have been processed as small peptides and bound to major
histocompatibility complex (MHC) molecules at the surface of antigen presenting cells (APC). Each T cell receptor
is a dimer consisting of one alpha and one beta chain or one delta and one gamma chain. In a single cell, the T
cell receptor loci are rearranged and expressed in the order delta, gamma, beta, and alpha. If both delta and
gamma rearrangements produce functional chains, the cell expresses delta and gamma. If not, the cell proceeds to
rearrange the beta and alpha loci. This region represents the germline organization of the T cell receptor gamma
locus. The gamma locus includes V (variable), J (joining), and C (constant) segments. During T cell development,
the gamma chain is synthesized by a recombination event at the DNA level joining a V segment with a J segment;
the C segment is later joined by splicing at the RNA level. Recombination of many different V segments with
several J segments provides a wide range of antigen recognition. Additional diversity is attained by junctional
diversity, resulting from the random addition of nucleotides by terminal deoxynucleotidyltransferase. Several V
segments of the gamma locus are known to be incapable of encoding a protein and are considered pseudogenes.
Somatic rearrangement of the gamma locus has been observed in T cells derived from patients with T cell leukemia
and ataxia telangiectasia. (provided by RefSeq, Jul 2008)

GeneCards Summary for TRG Gene:
TRG (T cell receptor gamma locus) is a protein-coding gene. Diseases associated with TRG include angioimmunoblastic lymphadenopathy with dysproteinemia, and cytophagic histiocytic panniculitis.

Gene Wiki entry for TRG (TRG@) Gene


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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Regulatory elements:
   Search for regulatory transcription factor binding sites for TRG
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidTRG promoter sequence
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Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat TRG


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 7p14   HGNC cytogenetic band: 7p14

TRG Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
TRG gene location

GeneLoc information about chromosome 7         GeneLoc Exon Structure

GeneLoc location for GC07M038284:  view genomic region     (about GC identifiers)

Start:
38,279,625 bp from pter      End:
38,407,656 bp from pter
Size:
128,032 bases      Orientation:
minus strand

1 alternative location:
Chr7-,CRA_TCAG 38,317,305-38,445,327     

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB: --


(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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HGNC Gene Families:
TRG: T cell receptors / TRG locus

  --

(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Phenotypes:
     7 MGI mutant phenotypes (inferred from 7 alleles(MGI details for Tcrg):
 cellular  digestive/alimentary  hematopoietic system  immune system  integument 
 no phenotypic analysis  normal 

TRG for phenotypes           About GeneDecksing

Animal Models:
     MGI mouse knock-outs for TRG: Tcrgtm1Iku Tcrgtm1.1Dhr Tcrgtm1Ahay Tcrgtm1Scar Tcrgtm1.1Hish

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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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  --

(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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    Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for TRG
Interactions:

    Search GeneGlobe Interaction Network for TRG

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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Browse Small Molecules at EMD Millipore
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  Browse compounds at ApexBio 

Browse Tocris compounds for TRG

2 Novoseek inferred chemical compound relationships for TRG gene    About this table
Compound   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
polyacrylamide 39.1 2 16404354 (1), 11407983 (1)
testosterone 0 1 12865322 (1)



TRG for compounds           About GeneDecksing



(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, and/or QIAGEN )
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miRNA
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GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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TRG expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: --
TRG Expression
About this image

TRG Protein expression data from MOPED1, PaxDb2 and MaxQB3 --
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In Situ
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(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of human and mouse.

Orthologs for TRG gene from 1 species (see representative species )    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
mouse
(Mus musculus)
Mammalia Tcrg5 T cell receptor gamma chain   --   13 -

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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  --

(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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Site Specific Mutation Identification with PCR Assays
Search QIAGEN SeqTarget long-range PCR primers for resequencing TRG
DNA2.0 Custom Variant and Variant Library Synthesis for TRG

(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Novoseek, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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OMIM gene information: 610218    OMIM disorders: --

Selected diseases for TRG (see all 57):    
About MalaCards
angioimmunoblastic lymphadenopathy with dysproteinemia    cytophagic histiocytic panniculitis    subcutaneous panniculitis-like t-cell lymphoma    primary cutaneous anaplastic large cell lymphoma
gastrointestinal lymphoma    juvenile xanthogranuloma    chronic active epstein-barr virus infection    ataxia telangiectasia
t-cell large granular lymphocyte leukemia    precursor t-cell acute lymphoblastic leukemia    takayasu's arteritis    lymphomatoid papulosis
marginal zone b-cell lymphoma    panniculitis    angioimmunoblastic t-cell lymphoma    precursor b-cell acute lymphoblastic leukemia
large granular lymphocyte leukemia    mycosis fungoides    lichen sclerosus    west nile virus


TRG for disorders           About GeneDecksing

Selected Novoseek inferred disease relationships for TRG gene (see all 17)    About this table

Disease   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
minimal residual disease 80.1 10 10914544 (2), 14687622 (2), 12970784 (1), 16247752 (1) (see all 7)
t-all 77.4 26 10914544 (8), 8289500 (3), 10025894 (2), 10516765 (2) (see all 10)
lymphoma t-cell peripheral 74.2 1 17431414 (1)
lymphoma t-cell 70.3 1 16266900 (1)
lymphoblastic leukemia acute 67.8 3 10025893 (1), 8289500 (1), 14687622 (1)
mycosis fungoides 57.7 3 15660892 (1), 18644018 (1), 8409516 (1)
lymphoma t-cell cutaneous 54.6 1 7769255 (1)
lymphoma 52.8 2 10890990 (1), 8199020 (1)
leukemia 51.8 4 10613353 (2), 10865981 (1), 7992601 (1)
lymphoid neoplasm 44.6 1 16266900 (1)


Export disorders for TRG gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for TRG gene, integrated from 10 sources (see all 156):
(articles sorted by number of sources associating them with TRG)
    Utopia: connect your pdf to the dynamic
world of online information

  1. Molecular mapping of the human T cell receptor gamma (TRG) genes and linkage of the variable and constant regions. (PubMed id 2526744)1, 3 Lefranc M.P....Lefranc G. (Eur. J. Immunol. 1989)
  2. Characterization of an expressed CD3-associated Ti gamma-chain reveals C gamma domain polymorphism. (PubMed id 3102973)1, 3 Littman D.R.... Weiss A. (Nature 1987)
  3. Characterization of the androgen-regulated prostate-specific T cell receptor gamma-chain alternate reading frame protein (TARP) promoter. (PubMed id 12865322)1, 9 Cheng W.S....Essand M. (Endocrinology 2003)
  4. Human CD3I^, but not CD3I', haploinsufficiency differentially impairs I^I' versus I+I^ surface TCR expression. (PubMed id 23336327)1 MuA+oz-Ruiz M....Regueiro J.R. (BMC Immunol. 2013)
  5. A second combinatorial immune receptor in monocytes/macrophages is based on the TCRI^I'. (PubMed id 23312956)1 Fuchs T....Kaminski W.E. (Immunobiology 2013)
  6. CD1d-lipid antigen recognition by the ?? TCR. (PubMed id 24076636)1 Uldrich A.P....Godfrey D.I. (Nat. Immunol. 2013)
  7. An abnormal phenotype of lung VI^9VI'2 T cells impairs their responsiveness in tuberculosis patients. (PubMed id 23770719)1 El Daker S....Martino A. (Cell. Immunol. 2013)
  8. Combined TCRG and TCRA TREC analysis reveals increased peripheral T-lymphocyte but constant intra-thymic proliferative history upon ageing. (PubMed id 23000520)1 van der Weerd K....Staal F.J. (Mol. Immunol. 2013)
  9. Dietary gluten triggers concomitant activation of CD4+ and CD8+ I+I^ T cells and I^I' T cells in celiac disease. (PubMed id 23878218)1 Han A....Davis M.M. (Proc. Natl. Acad. Sci. U.S.A. 2013)
  10. Antibody-dependent anti-cytomegalovirus activity of human I^I' T cells expressing CD16 (FcI^RIIIa). (PubMed id 22180442)1 Couzi L....DAcchanet-Merville J. (Blood 2012)

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Disorders
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 6965 HGNC: 12271 euGenes: HUgn6965 ECgene: TRG H-InvDB: TRG

(According to HUGE)
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  --

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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NameDescription
PharmGKB entry for TRG Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for TRG gene:
Search GeneIP for patents involving TRG

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, and ESI BIO, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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