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Aliases for TRF-GAA5-1 Gene

Subcategory (RNA class) for TRF-GAA5-1 Gene

tRNA

Quality Score for this RNA gene is

2

Aliases for TRF-GAA5-1 Gene

  • Transfer RNA-Phe (GAA) 5-1 2 3
  • Transfer RNA Phenylalanine 4 (Anticodon GAA) 2 3
  • TRNA-Phe-GAA-5-1 3
  • TRNAF4 3

External Ids for TRF-GAA5-1 Gene

ORGUL Members for TRF-GAA5-1 Gene

Previous HGNC Symbols for TRF-GAA5-1 Gene

  • TRNAF4

Summaries for TRF-GAA5-1 Gene

GeneCards Summary for TRF-GAA5-1 Gene

TRF-GAA5-1 (Transfer RNA-Phe (GAA) 5-1) is an RNA Gene, and is affiliated with the tRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRF-GAA5-1 Gene

Genomics for TRF-GAA5-1 Gene

Regulatory Elements for TRF-GAA5-1 Gene

Enhancers for TRF-GAA5-1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06F028775 1 ENCODE 0.4 +12.1 12143 1.3 ATF1 ARNT SIN3A FEZF1 ZNF2 ETS1 ELK1 GATA2 KLF7 JUNB TRIM27 ZNF603P TRA-AGC23-1 TRF-GAA5-1
GH06F028772 0.8 ENCODE 0.4 +8.4 8372 0.2 TBL1XR1 FOS CREM JUNB ZEB2 REST MEF2D CBX8 SMARCA4 PBX2 ZNF603P TRA-AGC23-1 TRF-GAA5-1
GH06F028771 0.8 ENCODE 0.4 +7.5 7522 0.1 CTCF ESRRA ATF1 SUZ12 NFRKB ZIC2 RAD21 CHAMP1 CREM ZNF263 TRA-AGC23-1 TRF-GAA5-1
GH06F028776 0.8 ENCODE 0.4 +11.4 11352 0.2 HDAC1 ATF1 NFRKB SIN3A ZNF644 ZNF335 FOXK2 ZBTB48 SCRT2 ZNF600 LINC01556 TRA-AGC23-1 TRF-GAA5-1
GH06F028777 0.8 ENCODE 0.4 +12.9 12892 0.2 HDAC1 ATF1 ZNF133 ZNF2 ZNF23 GATA2 SCRT2 KLF7 ZBTB11 ZEB2 TRIM27 TRA-AGC23-1 TRF-GAA5-1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TRF-GAA5-1 on UCSC Golden Path with GeneCards custom track

Genomic Location for TRF-GAA5-1 Gene

Chromosome:
6
Start:
28,764,387 bp from pter
End:
28,764,459 bp from pter
Size:
73 bases
Orientation:
Plus strand

Genomic View for TRF-GAA5-1 Gene

Genes around TRF-GAA5-1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRF-GAA5-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRF-GAA5-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for TRF-GAA5-1 Gene

Post-translational modifications for TRF-GAA5-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRF-GAA5-1 Gene

Domains & Families for TRF-GAA5-1 Gene

Gene Families for TRF-GAA5-1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRF-GAA5-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRF-GAA5-1 Gene

Function for TRF-GAA5-1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRF-GAA5-1 Gene

Localization for TRF-GAA5-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TRF-GAA5-1 Gene

Pathways & Interactions for TRF-GAA5-1 Gene

SuperPathways for TRF-GAA5-1 Gene

No Data Available

Interacting Proteins for TRF-GAA5-1 Gene

Gene Ontology (GO) - Biological Process for TRF-GAA5-1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRF-GAA5-1 Gene

Transcripts for TRF-GAA5-1 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for TRF-GAA5-1 Gene

No ASD Table

Relevant External Links for TRF-GAA5-1 Gene

GeneLoc Exon Structure for
TRF-GAA5-1
ECgene alternative splicing isoforms for
TRF-GAA5-1

No data available for mRNA/cDNA for TRF-GAA5-1 Gene

Expression for TRF-GAA5-1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for TRF-GAA5-1 Gene

Orthologs for TRF-GAA5-1 Gene

No data available for Orthologs and Evolution for TRF-GAA5-1 Gene

Paralogs for TRF-GAA5-1 Gene

No data available for Paralogs for TRF-GAA5-1 Gene

Variants for TRF-GAA5-1 Gene

Relevant External Links for TRF-GAA5-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRF-GAA5-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRF-GAA5-1 Gene

Disorders for TRF-GAA5-1 Gene

No disorders were found for TRF-GAA5-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRF-GAA5-1 Gene

Publications for TRF-GAA5-1 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan P.P. … Lowe T.M. (Nucleic Acids Res. 2009) 3 64

Products for TRF-GAA5-1 Gene

Sources for TRF-GAA5-1 Gene

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