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Aliases for TRF-GAA5-1 Gene

Subcategory (RNA class) for TRF-GAA5-1 Gene

tRNA

Quality Score for this RNA gene is

2

Aliases for TRF-GAA5-1 Gene

  • Transfer RNA-Phe (GAA) 5-1 2 3
  • Transfer RNA Phenylalanine 4 (Anticodon GAA) 2 3
  • TRNA-Phe-GAA-5-1 3
  • TRNAF4 3

External Ids for TRF-GAA5-1 Gene

ORGUL Members for TRF-GAA5-1 Gene

Previous HGNC Symbols for TRF-GAA5-1 Gene

  • TRNAF4

Summaries for TRF-GAA5-1 Gene

GeneCards Summary for TRF-GAA5-1 Gene

TRF-GAA5-1 (Transfer RNA-Phe (GAA) 5-1) is an RNA Gene, and is affiliated with the tRNA class.

Additional gene information for TRF-GAA5-1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRF-GAA5-1 Gene

Genomics for TRF-GAA5-1 Gene

Regulatory Elements for TRF-GAA5-1 Gene

Enhancers for TRF-GAA5-1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06H028775 1.2 ENCODE dbSUPER 0.4 +12.1 12143 1.3 HDGF ARNT FEZF1 ZNF2 ETS1 TCF12 ZNF766 GATA2 ELK1 KLF7 TRIM27 ZNF603P TRA-AGC23-1 TRF-GAA5-1
GH06H028772 1.1 ENCODE dbSUPER 0.4 +8.4 8372 0.2 PKNOX1 TBL1XR1 ARNT EGR1 FOS ATF7 CREM ZEB2 REST ELF1 ZNF603P TRA-AGC23-1 TRF-GAA5-1
GH06H028771 1.1 ENCODE dbSUPER 0.4 +7.5 7522 0.1 ATF1 RB1 NFRKB RAD21 CHAMP1 ATF7 CREM SMARCA5 ZNF654 REST TRA-AGC23-1 TRF-GAA5-1
GH06H028777 1.1 ENCODE dbSUPER 0.4 +12.9 12892 0.2 HDAC1 ZNF2 ZNF23 ZNF766 GATA2 ZSCAN5C SCRT2 KLF7 ATF7 ZBTB11 TRIM27 PGBD1 ENSG00000261839 ZNF192P1 ZSCAN26 TRA-AGC23-1 TRF-GAA5-1
GH06H028776 0.4 ENCODE 0.4 +11.4 11352 0.2 EZH2 LINC01556 TRA-AGC23-1 TRF-GAA5-1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TRF-GAA5-1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TRF-GAA5-1 Gene

Genomic Locations for TRF-GAA5-1 Gene
chr6:28,764,387-28,764,459
(GRCh38/hg38)
Size:
73 bases
Orientation:
Plus strand
chr6:28,732,164-28,732,236
(GRCh37/hg19)

Genomic View for TRF-GAA5-1 Gene

Genes around TRF-GAA5-1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRF-GAA5-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRF-GAA5-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for TRF-GAA5-1 Gene

Post-translational modifications for TRF-GAA5-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRF-GAA5-1 Gene

Domains & Families for TRF-GAA5-1 Gene

Gene Families for TRF-GAA5-1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRF-GAA5-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRF-GAA5-1 Gene

Function for TRF-GAA5-1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRF-GAA5-1 Gene

Localization for TRF-GAA5-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRF-GAA5-1 Gene

Pathways & Interactions for TRF-GAA5-1 Gene

SuperPathways for TRF-GAA5-1 Gene

No Data Available

Interacting Proteins for TRF-GAA5-1 Gene

Gene Ontology (GO) - Biological Process for TRF-GAA5-1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRF-GAA5-1 Gene

Drugs & Compounds for TRF-GAA5-1 Gene

No Compound Related Data Available

Transcripts for TRF-GAA5-1 Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRF-GAA5-1 Gene

No ASD Table

Relevant External Links for TRF-GAA5-1 Gene

GeneLoc Exon Structure for
TRF-GAA5-1
ECgene alternative splicing isoforms for
TRF-GAA5-1

No data available for mRNA/cDNA for TRF-GAA5-1 Gene

Expression for TRF-GAA5-1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRF-GAA5-1 Gene

Orthologs for TRF-GAA5-1 Gene

No data available for Orthologs and Evolution for TRF-GAA5-1 Gene

Paralogs for TRF-GAA5-1 Gene

No data available for Paralogs for TRF-GAA5-1 Gene

Variants for TRF-GAA5-1 Gene

Relevant External Links for TRF-GAA5-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRF-GAA5-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRF-GAA5-1 Gene

Disorders for TRF-GAA5-1 Gene

No disorders were found for TRF-GAA5-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRF-GAA5-1 Gene

Publications for TRF-GAA5-1 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan PP … Lowe TM (Nucleic acids research 2009) 3 60

Products for TRF-GAA5-1 Gene

Sources for TRF-GAA5-1 Gene

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