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Aliases for TRF-GAA3-1 Gene

Subcategory (RNA class) for TRF-GAA3-1 Gene

tRNA

Quality Score for this RNA gene is

2

Aliases for TRF-GAA3-1 Gene

  • Transfer RNA-Phe (GAA) 3-1 2 3
  • Transfer RNA Phenylalanine 5 (Anticodon GAA) 2 3
  • TRNA-Phe-GAA-3-1 3
  • TRNAF5 3

External Ids for TRF-GAA3-1 Gene

ORGUL Members for TRF-GAA3-1 Gene

Previous HGNC Symbols for TRF-GAA3-1 Gene

  • TRNAF5

Previous GeneCards Identifiers for TRF-GAA3-1 Gene

  • GC06M028812
  • GC06M028816
  • GC06M028830
  • GC06M028846
  • GC06M028851

Summaries for TRF-GAA3-1 Gene

GeneCards Summary for TRF-GAA3-1 Gene

TRF-GAA3-1 (Transfer RNA-Phe (GAA) 3-1) is an RNA Gene, and is affiliated with the tRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRF-GAA3-1 Gene

Genomics for TRF-GAA3-1 Gene

Regulatory Elements for TRF-GAA3-1 Gene

Enhancers for TRF-GAA3-1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06G028802 1.6 Ensembl ENCODE dbSUPER 0.7 +4.9 4850 1.1 HDGF PKNOX1 ARNT SIN3A YBX1 ZNF2 ZNF766 ZNF302 KLF13 SP3 ZKSCAN3 TRIM27 ZKSCAN8 ZKSCAN4 PGBD1 ZFP57 HLA-F-AS1 MICE ZSCAN9 HCG9P5
GH06G028807 1.6 Ensembl ENCODE dbSUPER 0.7 -0.2 -193 1.0 HDGF PKNOX1 CREB3L1 ARNT ARID4B FEZF1 ZNF2 FOS KLF13 JUNB TRIM27 ZKSCAN3 ZFP57 ZKSCAN4 ZKSCAN8 ZSCAN9 LINC01556 ZNF602P OR2B7P GC06M028850
GH06G028810 1.2 ENCODE dbSUPER 0.7 -2.6 -2574 0.2 ARNT SIN3A ZNF2 ZNF48 PBX2 NBN KDM1A WT1 SP7 LEF1 GC06M028850 GC06M028889 TRA-AGC6-1 TRF-GAA3-1
GH06G028811 1.2 ENCODE dbSUPER 0.7 -2.3 -2264 0.1 ARNT SIN3A ZNF2 ZNF48 REST SMARCA4 NBN KDM1A WT1 SP7 ZNF603P GC06M028850 GC06M028889 TRA-AGC6-1 TRF-GAA3-1
GH06G028808 1.1 ENCODE dbSUPER 0.7 -0.8 -774 0.2 HDGF NFRKB ZBTB40 ZNF335 ELK1 SMARCA5 MIER1 ZBTB11 JUNB ELF4 ZFP57 GC06M028850 GC06M028889 TRA-AGC6-1 TRF-GAA3-1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TRF-GAA3-1 on UCSC Golden Path with GeneCards custom track

Genomic Location for TRF-GAA3-1 Gene

Chromosome:
6
Start:
28,807,833 bp from pter
End:
28,807,905 bp from pter
Size:
73 bases
Orientation:
Minus strand

Genomic View for TRF-GAA3-1 Gene

Genes around TRF-GAA3-1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRF-GAA3-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRF-GAA3-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for TRF-GAA3-1 Gene

Post-translational modifications for TRF-GAA3-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRF-GAA3-1 Gene

Domains & Families for TRF-GAA3-1 Gene

Gene Families for TRF-GAA3-1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRF-GAA3-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRF-GAA3-1 Gene

Function for TRF-GAA3-1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRF-GAA3-1 Gene

Localization for TRF-GAA3-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TRF-GAA3-1 Gene

Pathways & Interactions for TRF-GAA3-1 Gene

SuperPathways for TRF-GAA3-1 Gene

No Data Available

Interacting Proteins for TRF-GAA3-1 Gene

Gene Ontology (GO) - Biological Process for TRF-GAA3-1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRF-GAA3-1 Gene

Drugs & Compounds for TRF-GAA3-1 Gene

No Compound Related Data Available

Transcripts for TRF-GAA3-1 Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRF-GAA3-1 Gene

No ASD Table

Relevant External Links for TRF-GAA3-1 Gene

GeneLoc Exon Structure for
TRF-GAA3-1
ECgene alternative splicing isoforms for
TRF-GAA3-1

No data available for mRNA/cDNA for TRF-GAA3-1 Gene

Expression for TRF-GAA3-1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRF-GAA3-1 Gene

Orthologs for TRF-GAA3-1 Gene

No data available for Orthologs and Evolution for TRF-GAA3-1 Gene

Paralogs for TRF-GAA3-1 Gene

No data available for Paralogs for TRF-GAA3-1 Gene

Variants for TRF-GAA3-1 Gene

Relevant External Links for TRF-GAA3-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRF-GAA3-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRF-GAA3-1 Gene

Disorders for TRF-GAA3-1 Gene

No disorders were found for TRF-GAA3-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRF-GAA3-1 Gene

Publications for TRF-GAA3-1 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan P.P. … Lowe T.M. (Nucleic Acids Res. 2009) 3 64

Products for TRF-GAA3-1 Gene

Sources for TRF-GAA3-1 Gene

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