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Aliases for TRF-GAA2-1 Gene

Subcategory (RNA class) for TRF-GAA2-1 Gene

non-coding RNA

Quality Score for this RNA gene is

2

Aliases for TRF-GAA2-1 Gene

  • Transfer RNA-Phe (GAA) 2-1 2 3
  • Transfer RNA Phenylalanine 1 (Anticodon GAA) 2 3
  • TRNA-Phe-GAA-2-1 3
  • TRNAF1 3

External Ids for TRF-GAA2-1 Gene

Previous HGNC Symbols for TRF-GAA2-1 Gene

  • TRNAF1

Summaries for TRF-GAA2-1 Gene

GeneCards Summary for TRF-GAA2-1 Gene

TRF-GAA2-1 (Transfer RNA-Phe (GAA) 2-1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRF-GAA2-1 Gene

Genomics for TRF-GAA2-1 Gene

Regulatory Elements for TRF-GAA2-1 Gene

Enhancers for TRF-GAA2-1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11F059572 0.7 Ensembl ENCODE 0.4 -7.8 -7794 3.3 CEBPB ZNF530 PRDM1 STX3 LOC101927226 MS4A6A PIR56354 TRF-GAA2-1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TRF-GAA2-1 on UCSC Golden Path with GeneCards custom track

Promoters for TRF-GAA2-1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001768818 451 1599 ARNT ARID4B SIN3A YBX1 ZNF2 CBX5 FOS SP3 JUNB TBX21

Genomic Location for TRF-GAA2-1 Gene

Chromosome:
11
Start:
59,566,380 bp from pter
End:
59,566,452 bp from pter
Size:
73 bases
Orientation:
Minus strand

Genomic View for TRF-GAA2-1 Gene

Genes around TRF-GAA2-1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRF-GAA2-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRF-GAA2-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRF-GAA2-1 Gene

Proteins for TRF-GAA2-1 Gene

Post-translational modifications for TRF-GAA2-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRF-GAA2-1 Gene

Domains & Families for TRF-GAA2-1 Gene

Gene Families for TRF-GAA2-1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRF-GAA2-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRF-GAA2-1 Gene

Function for TRF-GAA2-1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRF-GAA2-1 Gene

Localization for TRF-GAA2-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TRF-GAA2-1 Gene

Pathways & Interactions for TRF-GAA2-1 Gene

SuperPathways for TRF-GAA2-1 Gene

No Data Available

Interacting Proteins for TRF-GAA2-1 Gene

Gene Ontology (GO) - Biological Process for TRF-GAA2-1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRF-GAA2-1 Gene

Transcripts for TRF-GAA2-1 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for TRF-GAA2-1 Gene

No ASD Table

Relevant External Links for TRF-GAA2-1 Gene

GeneLoc Exon Structure for
TRF-GAA2-1
ECgene alternative splicing isoforms for
TRF-GAA2-1

No data available for mRNA/cDNA for TRF-GAA2-1 Gene

Expression for TRF-GAA2-1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for TRF-GAA2-1 Gene

Orthologs for TRF-GAA2-1 Gene

No data available for Orthologs and Evolution for TRF-GAA2-1 Gene

Paralogs for TRF-GAA2-1 Gene

No data available for Paralogs for TRF-GAA2-1 Gene

Variants for TRF-GAA2-1 Gene

Relevant External Links for TRF-GAA2-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRF-GAA2-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRF-GAA2-1 Gene

Disorders for TRF-GAA2-1 Gene

No disorders were found for TRF-GAA2-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRF-GAA2-1 Gene

Publications for TRF-GAA2-1 Gene

  1. Analysis of a human gene cluster coding for tRNA(GAAPhe) and tRNA(UUULys). (PMID: 3678837) Doran J.L. … Roy K.L. (Gene 1987) 2 3 64
  2. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan P.P. … Lowe T.M. (Nucleic Acids Res. 2009) 3 64

Products for TRF-GAA2-1 Gene

Sources for TRF-GAA2-1 Gene

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