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Aliases for TRF-GAA1-1 Gene

Subcategory (RNA class) for TRF-GAA1-1 Gene

non-coding RNA

Quality Score for this RNA gene is

2

Aliases for TRF-GAA1-1 Gene

  • Transfer RNA-Phe (GAA) 1-1 2 3
  • Transfer RNA Phenylalanine 3 (Anticodon GAA) 2 3
  • Transfer RNA-Phe (GAA) 1-5 2 3
  • TRNA-Phe-GAA-1-5 3
  • TRF-GAA1-5 3
  • TRNAF3 3

External Ids for TRF-GAA1-1 Gene

Previous HGNC Symbols for TRF-GAA1-1 Gene

  • TRNAF3
  • TRF-GAA1-5

Previous GeneCards Identifiers for TRF-GAA1-1 Gene

  • GC11M059558
  • GC06M028794

Summaries for TRF-GAA1-1 Gene

GeneCards Summary for TRF-GAA1-1 Gene

TRF-GAA1-1 (Transfer RNA-Phe (GAA) 1-1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for TRF-GAA1-1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRF-GAA1-1 Gene

Genomics for TRF-GAA1-1 Gene

Regulatory Elements for TRF-GAA1-1 Gene

Enhancers for TRF-GAA1-1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06H028789 1.6 Ensembl ENCODE dbSUPER 0.7 +0.6 611 1 PKNOX1 ARNT ARID4B ZNF2 ZNF766 FOS SP3 NFYC REST ZNF592 ZKSCAN8 ZSCAN12 ZKSCAN3 ZKSCAN4 ZSCAN23 ZSCAN9 TRIM27 ZNF311 ZSCAN26 ZFP57
GH06H028794 1.1 Ensembl ENCODE 0.7 -3.8 -3807 0 HDAC1 ZNF777 CEBPG ZBTB40 ZNF2 MTA3 ZNF366 ZSCAN29 ZNF600 PRDM10 ZNF603P ZFP57 TRA-AGC1-1 TRF-GAA1-1 GC06M028798
GH06H028795 1.4 Ensembl ENCODE 0.4 -5.2 -5207 0 PKNOX1 MLX ARNT ARID4B SIN3A DMAP1 ZNF2 ZNF766 SP3 ZHX2 ZKSCAN8 ZSCAN12 ZKSCAN3 GABBR1 ZSCAN23 PGBD1 ZKSCAN4 ZFP57 ZSCAN9 SUMO2P1
GH06H028791 0.7 Ensembl dbSUPER 0.7 -0.5 -507 0 MNT ZBTB40 PRDM1 TRF-GAA1-1 TRA-AGC1-1 GC06M028798
GH06H028792 0.6 Ensembl dbSUPER 0.7 -0.9 -907 0 MNT TRF-GAA1-1 TRA-AGC1-1 GC06M028798
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TRF-GAA1-1 on UCSC Golden Path with GeneCards custom track

Genomic Location for TRF-GAA1-1 Gene

Chromosome:
6
Start:
28,790,722 bp from pter
End:
28,790,794 bp from pter
Size:
73 bases
Orientation:
Minus strand

Genomic View for TRF-GAA1-1 Gene

Genes around TRF-GAA1-1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRF-GAA1-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRF-GAA1-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for TRF-GAA1-1 Gene

Post-translational modifications for TRF-GAA1-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRF-GAA1-1 Gene

Domains & Families for TRF-GAA1-1 Gene

Gene Families for TRF-GAA1-1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRF-GAA1-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRF-GAA1-1 Gene

Function for TRF-GAA1-1 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for TRF-GAA1-1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRF-GAA1-1 Gene

Localization for TRF-GAA1-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRF-GAA1-1 Gene

Pathways & Interactions for TRF-GAA1-1 Gene

SuperPathways for TRF-GAA1-1 Gene

No Data Available

Interacting Proteins for TRF-GAA1-1 Gene

Gene Ontology (GO) - Biological Process for TRF-GAA1-1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRF-GAA1-1 Gene

Drugs & Compounds for TRF-GAA1-1 Gene

No Compound Related Data Available

Transcripts for TRF-GAA1-1 Gene

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for TRF-GAA1-1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for TRF-GAA1-1 Gene

No ASD Table

Relevant External Links for TRF-GAA1-1 Gene

GeneLoc Exon Structure for
TRF-GAA1-1
ECgene alternative splicing isoforms for
TRF-GAA1-1

No data available for mRNA/cDNA for TRF-GAA1-1 Gene

Expression for TRF-GAA1-1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRF-GAA1-1 Gene

Orthologs for TRF-GAA1-1 Gene

No data available for Orthologs and Evolution for TRF-GAA1-1 Gene

Paralogs for TRF-GAA1-1 Gene

No data available for Paralogs for TRF-GAA1-1 Gene

Variants for TRF-GAA1-1 Gene

Relevant External Links for TRF-GAA1-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRF-GAA1-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRF-GAA1-1 Gene

Disorders for TRF-GAA1-1 Gene

No disorders were found for TRF-GAA1-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRF-GAA1-1 Gene

Publications for TRF-GAA1-1 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan PP … Lowe TM (Nucleic acids research 2009) 3 60

Products for TRF-GAA1-1 Gene

Sources for TRF-GAA1-1 Gene

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