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Aliases for TRERNA1 Gene

Subcategory (RNA class) for TRERNA1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TRERNA1 Gene

  • Translation Regulatory Long Non-Coding RNA 1 2 3
  • Translational Regulatory Long Non-Coding RNA 2 3
  • Long Intergenic Non-Protein Coding RNA 651 2 3
  • Noncoding RNA-Activating 7 3
  • LINC00651 3
  • NcRNA-A7 3
  • TreRNA 3

External Ids for TRERNA1 Gene

Previous HGNC Symbols for TRERNA1 Gene

  • LINC00651

Previous GeneCards Identifiers for TRERNA1 Gene

  • GC20M048659

Summaries for TRERNA1 Gene

GeneCards Summary for TRERNA1 Gene

TRERNA1 (Translation Regulatory Long Non-Coding RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRERNA1 Gene

Genomics for TRERNA1 Gene

Genomic Location for TRERNA1 Gene

Chromosome:
20
Start:
50,040,707 bp from pter
End:
50,041,629 bp from pter
Size:
923 bases
Orientation:
Minus strand

Genomic View for TRERNA1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
GeneLoc Logo Gene Density

RefSeq DNA sequence for TRERNA1 Gene

No data available for Regulatory Elements for TRERNA1 Gene

Proteins for TRERNA1 Gene

Post-translational modifications for TRERNA1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRERNA1 Gene

Domains & Families for TRERNA1 Gene

Gene Families for TRERNA1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRERNA1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRERNA1 Gene

Function for TRERNA1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRERNA1 Gene

Localization for TRERNA1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TRERNA1 Gene

Pathways & Interactions for TRERNA1 Gene

SuperPathways for TRERNA1 Gene

No Data Available

Interacting Proteins for TRERNA1 Gene

Gene Ontology (GO) - Biological Process for TRERNA1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRERNA1 Gene

Drugs & Compounds for TRERNA1 Gene

No Compound Related Data Available

Transcripts for TRERNA1 Gene

mRNA/cDNA for TRERNA1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TRERNA1 Gene

No ASD Table

Relevant External Links for TRERNA1 Gene

GeneLoc Exon Structure for
TRERNA1
ECgene alternative splicing isoforms for
TRERNA1

Expression for TRERNA1 Gene

mRNA expression in normal human tissues for TRERNA1 Gene

mRNA differential expression in normal tissues according to GTEx for TRERNA1 Gene

This gene is overexpressed in Testis (x19.6), Whole Blood (x12.7), Spleen (x9.0), Small Intestine - Terminal Ileum (x4.2), and Cervix - Endocervix (x4.1).
genes like me logo Genes that share expression patterns with TRERNA1: view

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for TRERNA1 Gene

Orthologs for TRERNA1 Gene

Evolution for TRERNA1 Gene

ENSEMBL:
Gene Tree for TRERNA1 (if available)
TreeFam:
Gene Tree for TRERNA1 (if available)

No data available for Orthologs for TRERNA1 Gene

Paralogs for TRERNA1 Gene

No data available for Paralogs for TRERNA1 Gene

Variants for TRERNA1 Gene

Sequence variations from dbSNP and Humsavar for TRERNA1 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type MAF
rs6012816 -- 50,040,532(+) GGCTG(A/G)AACCT downstream-variant-500B
rs6012817 -- 50,043,466(+) TTTTT(A/T)AGACG upstream-variant-2KB
rs6012818 -- 50,043,479(+) GTCTC(C/G)CTCTG upstream-variant-2KB
rs6067330 -- 50,042,806(+) CCTCA(A/G)AGGGA upstream-variant-2KB
rs6125876 -- 50,041,576(+) CTATA(A/C)CCAGT nc-transcript-variant

Relevant External Links for TRERNA1 Gene

HapMap Linkage Disequilibrium report
TRERNA1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRERNA1 Gene

Disorders for TRERNA1 Gene

Relevant External Links for TRERNA1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TRERNA1
genes like me logo Genes that share disorders with TRERNA1: view

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TRERNA1 Gene

Publications for TRERNA1 Gene

  1. Identification of a long non-coding RNA-associated RNP complex regulating metastasis at the translational step. (PMID: 23974796) Gumireddy K. … Huang Q. (EMBO J. 2013) 2 67
  2. Long noncoding RNAs with enhancer-like function in human cells. (PMID: 20887892) A9rom U.A. … Shiekhattar R. (Cell 2010) 2 67
  3. lncRNAdb: a reference database for long noncoding RNAs. (PMID: 21112873) Amaral P.P. … Mattick J.S. (Nucleic Acids Res. 2011) 67

Products for TRERNA1 Gene

Sources for TRERNA1 Gene

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