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Aliases for TRERNA1 Gene

Subcategory (RNA class) for TRERNA1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TRERNA1 Gene

  • Translation Regulatory Long Non-Coding RNA 1 2 3 5
  • Translational Regulatory Long Non-Coding RNA 2 3
  • Long Intergenic Non-Protein Coding RNA 651 2 3
  • Noncoding RNA-Activating 7 3
  • LINC00651 3
  • NcRNA-A7 3
  • TreRNA 3

External Ids for TRERNA1 Gene

Previous HGNC Symbols for TRERNA1 Gene

  • LINC00651

Previous GeneCards Identifiers for TRERNA1 Gene

  • GC20M048659

Summaries for TRERNA1 Gene

GeneCards Summary for TRERNA1 Gene

TRERNA1 (Translation Regulatory Long Non-Coding RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for TRERNA1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRERNA1 Gene

Genomics for TRERNA1 Gene

Regulatory Elements for TRERNA1 Gene

Enhancers for TRERNA1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20H050032 1.4 Ensembl ENCODE dbSUPER 5.1 +7.4 7448 2 ELF3 PKNOX1 FOXA2 DMAP1 ZNF121 FOS ATF7 CEBPB REST NR2F2 SPATA2 TRERNA1 LOC105372654
GH20H050039 1 Ensembl ENCODE 0.7 +0.8 825 3 PKNOX1 ZMYM3 ZIC2 ZNF644 ZKSCAN1 ZFHX2 ADNP RCOR1 IKZF2 EGR2 SNAI1 RNF114 SPATA2 TRERNA1 LOC105372654
GH20H050046 1.7 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -7.2 -7167 5 ELF3 BATF RAD21 ZNF121 ZNF366 CEBPB REST NR2F2 ZNF341 GLIS1 SNAI1 SLC9A8 ADNP LINC01273 RNF114 CEBPB DPM1 DDX27 PTPN1 B4GALT5
GH20H050038 0.9 ENCODE 0.7 +2.8 2781 0 HDGF NFIB ZFP64 ARID4B SIN3A DMAP1 RAD21 ZBTB7B RCOR1 EGR2 PSMD10P1 DDX27 TRERNA1 LOC105372654
GH20H050052 1.4 FANTOM5 Ensembl ENCODE 0.4 -13.3 -13265 4 PTBP1 ARNT DMAP1 NFXL1 RAD21 DNMT3B GLIS2 EGR1 RCOR1 ATF7 UBE2V1 SPATA2 LOC105372655 TRERNA1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TRERNA1 on UCSC Golden Path with GeneCards custom track

Genomic Location for TRERNA1 Gene

Chromosome:
20
Start:
50,040,707 bp from pter
End:
50,041,629 bp from pter
Size:
923 bases
Orientation:
Minus strand

Genomic View for TRERNA1 Gene

Genes around TRERNA1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRERNA1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRERNA1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRERNA1 Gene

Proteins for TRERNA1 Gene

Post-translational modifications for TRERNA1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRERNA1 Gene

Domains & Families for TRERNA1 Gene

Gene Families for TRERNA1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRERNA1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRERNA1 Gene

Function for TRERNA1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRERNA1 Gene

Localization for TRERNA1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRERNA1 Gene

Pathways & Interactions for TRERNA1 Gene

SuperPathways for TRERNA1 Gene

No Data Available

Interacting Proteins for TRERNA1 Gene

Gene Ontology (GO) - Biological Process for TRERNA1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRERNA1 Gene

Drugs & Compounds for TRERNA1 Gene

No Compound Related Data Available

Transcripts for TRERNA1 Gene

mRNA/cDNA for TRERNA1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TRERNA1 Gene

No ASD Table

Relevant External Links for TRERNA1 Gene

GeneLoc Exon Structure for
TRERNA1
ECgene alternative splicing isoforms for
TRERNA1

Expression for TRERNA1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TRERNA1 Gene

mRNA differential expression in normal tissues according to GTEx for TRERNA1 Gene

This gene is overexpressed in Testis (x19.6), Whole Blood (x12.7), Spleen (x9.0), Small Intestine - Terminal Ileum (x4.2), and Cervix - Endocervix (x4.1).

NURSA nuclear receptor signaling pathways regulating expression of TRERNA1 Gene:

TRERNA1
genes like me logo Genes that share expression patterns with TRERNA1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRERNA1 Gene

Orthologs for TRERNA1 Gene

Evolution for TRERNA1 Gene

ENSEMBL:
Gene Tree for TRERNA1 (if available)
TreeFam:
Gene Tree for TRERNA1 (if available)

No data available for Orthologs for TRERNA1 Gene

Paralogs for TRERNA1 Gene

No data available for Paralogs for TRERNA1 Gene

Variants for TRERNA1 Gene

Sequence variations from dbSNP and Humsavar for TRERNA1 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type
rs1000396294 -- 50,040,390(+) TGGCC(C/T)GTGGG downstream-variant-500B
rs1001534008 -- 50,042,170(+) GCTGA(A/G)GCCGG upstream-variant-2KB
rs1001597772 -- 50,042,655(+) TCCTA(A/C)GCTTT upstream-variant-2KB
rs1002519687 -- 50,041,800(+) GTGCC(A/G)GGCAC upstream-variant-2KB
rs1002600356 -- 50,041,477(+) AATCC(C/T)TGTTC nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for TRERNA1 Gene

Variant ID Type Subtype PubMed ID
nsv3413 CNV insertion 18451855
nsv509776 CNV insertion 20534489
nsv833999 CNV loss 17160897
nsv834000 CNV gain+loss 17160897

Relevant External Links for TRERNA1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRERNA1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TRERNA1 Gene

Disorders for TRERNA1 Gene

Relevant External Links for TRERNA1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TRERNA1

No disorders were found for TRERNA1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TRERNA1 Gene

Publications for TRERNA1 Gene

  1. Identification of a long non-coding RNA-associated RNP complex regulating metastasis at the translational step. (PMID: 23974796) Gumireddy K … Huang Q (The EMBO journal 2013) 2 3 60
  2. Long noncoding RNAs with enhancer-like function in human cells. (PMID: 20887892) Ørom UA … Shiekhattar R (Cell 2010) 2 3 60
  3. miR-190a inhibits epithelial-mesenchymal transition of hepatoma cells via targeting the long non-coding RNA treRNA. (PMID: 26608035) Wang X … Yang M (FEBS letters 2015) 3 60
  4. lncRNAdb: a reference database for long noncoding RNAs. (PMID: 21112873) Amaral PP … Mattick JS (Nucleic acids research 2011) 3 60
  5. LncRNA TRERNA1 Function as an Enhancer of SNAI1 Promotes Gastric Cancer Metastasis by Regulating Epithelial-Mesenchymal Transition. (PMID: 28918030) Wu H … Fan H (Molecular therapy. Nucleic acids 2017) 3

Products for TRERNA1 Gene

Sources for TRERNA1 Gene

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