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Aliases for TREML4 Gene

Aliases for TREML4 Gene

  • Triggering Receptor Expressed On Myeloid Cells-Like 4 2 3
  • TLT4 3 4 6
  • Triggering Receptor Expressed On Myeloid Cells-Like Protein 4 3 4
  • TREM Like Transcript 4 2 3
  • TLT-4 3 4
  • Trem-Like Transcript 4 Protein 3

External Ids for TREML4 Gene

Previous GeneCards Identifiers for TREML4 Gene

  • GC06P041304
  • GC06P040914

Summaries for TREML4 Gene

GeneCards Summary for TREML4 Gene

TREML4 (Triggering Receptor Expressed On Myeloid Cells-Like 4) is a Protein Coding gene. An important paralog of this gene is NCR2.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TREML4 Gene

Genomics for TREML4 Gene

Regulatory Elements for TREML4 Gene

Genomic Location for TREML4 Gene

Start:
41,228,324 bp from pter
End:
41,238,882 bp from pter
Size:
10,559 bases
Orientation:
Plus strand

Genomic View for TREML4 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TREML4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TREML4 Gene

Proteins for TREML4 Gene

  • Protein details for TREML4 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6UXN2-TRML4_HUMAN
    Recommended name:
    Trem-like transcript 4 protein
    Protein Accession:
    Q6UXN2
    Secondary Accessions:
    • B7ZL92

    Protein attributes for TREML4 Gene

    Size:
    200 amino acids
    Molecular mass:
    21924 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TREML4 Gene

Proteomics data for TREML4 Gene at MOPED

Post-translational modifications for TREML4 Gene

  • Glycosylation at Asn93
  • Modification sites at PhosphoSitePlus

Other Protein References for TREML4 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for TREML4 Gene

Domains for TREML4 Gene

Gene Families for TREML4 Gene

HGNC:
  • VSET :Immunoglobulin superfamily / V-set domain containing

Protein Domains for TREML4 Gene

Suggested Antigen Peptide Sequences for TREML4 Gene

Graphical View of Domain Structure for InterPro Entry

Q6UXN2

UniProtKB/Swiss-Prot:

TRML4_HUMAN :
  • Q6UXN2
Domain:
  • Contains 1 Ig-like V-type (immunoglobulin-like) domain.
genes like me logo Genes that share domains with TREML4: view

Function for TREML4 Gene

Gene Ontology (GO) - Molecular Function for TREML4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding --
genes like me logo Genes that share ontologies with TREML4: view

Phenotypes for TREML4 Gene

MGI mutant phenotypes for TREML4:
inferred from 1 alleles
GenomeRNAi human phenotypes for TREML4:
genes like me logo Genes that share phenotypes with TREML4: view

Animal Models for TREML4 Gene

MGI Knock Outs for TREML4:

Animal Model Products

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for TREML4

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , miRNA , Transcription Factor Targeting and HOMER Transcription for TREML4 Gene

Localization for TREML4 Gene

Subcellular locations from UniProtKB/Swiss-Prot for TREML4 Gene

Secreted.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for TREML4 Gene COMPARTMENTS Subcellular localization image for TREML4 gene
Compartment Confidence
extracellular 3
plasma membrane 2
cytosol 1
endoplasmic reticulum 1
mitochondrion 1
peroxisome 1

Gene Ontology (GO) - Cellular Components for TREML4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region IEA --
genes like me logo Genes that share ontologies with TREML4: view

Pathways for TREML4 Gene

SuperPathways for TREML4 Gene

No Data Available

Interacting Proteins for TREML4 Gene

Gene Ontology (GO) - Biological Process for TREML4 Gene

None

No data available for Pathways by source for TREML4 Gene

Transcripts for TREML4 Gene

mRNA/cDNA for TREML4 Gene

(6) Selected AceView cDNA sequences:
(6) Additional mRNA sequences :
(1) REFSEQ mRNAs :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TREML4 Gene

Triggering receptor expressed on myeloid cells-like 4:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for TREML4

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for TREML4
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for TREML4 Gene

ExUns: 1 ^ 2a · 2b ^ 3 ^ 4 ^ 5 ^ 6 ^ 7a · 7b
SP1: -
SP2:

Relevant External Links for TREML4 Gene

GeneLoc Exon Structure for
TREML4
ECgene alternative splicing isoforms for
TREML4

Expression for TREML4 Gene

mRNA expression in normal human tissues for TREML4 Gene

mRNA differential expression in normal tissues according to GTEx for TREML4 Gene

This gene is overexpressed in Whole Blood (40.5).

SOURCE GeneReport for Unigene cluster for TREML4 Gene Hs.434181

genes like me logo Genes that share expressions with TREML4: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for TREML4 Gene

Orthologs for TREML4 Gene

This gene was present in the common ancestor of mammals.

Orthologs for TREML4 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TREML4 35
  • 99.49 (n)
  • 98.46 (a)
TREML4 36
  • 92 (a)
OneToOne
dog
(Canis familiaris)
Mammalia -- 36
  • 17 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Treml4 16
Treml4 36
  • 38 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Treml4 35
  • 68.15 (n)
  • 57.22 (a)
Species with no ortholog for TREML4:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for TREML4 Gene

ENSEMBL:
Gene Tree for TREML4 (if available)
TreeFam:
Gene Tree for TREML4 (if available)

Paralogs for TREML4 Gene

Paralogs for TREML4 Gene

Selected SIMAP similar genes for TREML4 Gene using alignment to 2 proteins:

Pseudogenes.org Pseudogenes for TREML4 Gene

genes like me logo Genes that share paralogs with TREML4: view

Variants for TREML4 Gene

Sequence variations from dbSNP and Humsavar for TREML4 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type MAF
rs1484268 -- 41,233,103(-) TTATC(C/T)ACATT intron-variant
rs1825406 -- 41,229,778(-) CGTGA(C/G)AACAT intron-variant
rs1825407 -- 41,229,696(-) CCCAC(A/C)AGCCC intron-variant
rs1825409 -- 41,232,235(-) TTTCA(A/G)TGGGG intron-variant
rs1825410 -- 41,232,190(-) GAATC(A/C)AGAGG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TREML4 Gene

Variant ID Type Subtype PubMed ID
nsv823679 CNV Loss 20364138

Relevant External Links for TREML4 Gene

HapMap Linkage Disequilibrium report
TREML4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TREML4 Gene

Disorders for TREML4 Gene

Relevant External Links for TREML4

Human Genome Epidemiology (HuGE) Navigator
TREML4
genes like me logo Genes that share disorders with TREML4: view

No data available for UniProtKB/Swiss-Prot for TREML4 Gene

Publications for TREML4 Gene

  1. The human TREM gene cluster at 6p21.1 encodes both activating and inhibitory single IgV domain receptors and includes NKp44. (PMID: 12645956) Allcock R.J.N. … Trowsdale J. (Eur. J. Immunol. 2003) 2 3
  2. The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PMID: 12975309) Clark H.F. … Gray A.M. (Genome Res. 2003) 3 4
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
  4. New genetic associations detected in a host response study to hepatitis B vaccine. (PMID: 20237496) Davila S. … Seielstad M. (Genes Immun. 2010) 3
  5. Integrative DNA, RNA, and protein evidence connects TREML4 to coronary artery calcification. (PMID: 24975946) Sen S.K. … Biesecker L.G. (Am. J. Hum. Genet. 2014) 3

Products for TREML4 Gene

Sources for TREML4 Gene

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