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Aliases for TREML3P Gene

Aliases for TREML3P Gene

  • Triggering Receptor Expressed On Myeloid Cells Like 3, Pseudogene 2 3 5
  • TREM Like Transcript 3 2 3
  • Triggering Receptor Expressed On Myeloid Cells-Like 3, Pseudogene 2
  • Triggering Receptor Expressed On Myeloid Cells-Like 3 2
  • TREML3 3
  • TLT3 3

External Ids for TREML3P Gene

Previous HGNC Symbols for TREML3P Gene

  • TREML3

Summaries for TREML3P Gene

Entrez Gene Summary for TREML3P Gene

  • TREML3 is located in a gene cluster on chromosome 6 with the single Ig variable (IgV) domain activating receptors TREM1 (MIM 605085) and TREM2 (MIM 605086), but it has distinct structural and functional properties (Allcock et al., 2003 [PubMed 12645956]).[supplied by OMIM, Mar 2008]

GeneCards Summary for TREML3P Gene

TREML3P (Triggering Receptor Expressed On Myeloid Cells Like 3, Pseudogene) is a Pseudogene.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TREML3P Gene

Genomics for TREML3P Gene

Regulatory Elements for TREML3P Gene

Enhancers for TREML3P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06F041198 1.2 Ensembl ENCODE 20.1 +16.6 16574 6.3 HDGF ATF1 WRNIP1 SIN3A ZNF766 GATA2 ELK1 ZNF263 NCOA1 MIER2 TREML4 TREML3P TREM2 ADCY10P1 TREML5P TREML1 ENSG00000218809 TREML2
GH06F041227 0.9 Ensembl ENCODE 25 -10.6 -10591 1.3 CTCF ZNF654 HLF MAFG CEBPB ZNF316 PBX2 TRIM24 NFE2 MAFK TREML4 TREML3P RNA5SP207
GH06F041270 1.2 FANTOM5 Ensembl ENCODE 9.2 -54.1 -54112 2.5 CTCF ZFP64 MAX MYC EZH2 TREM1 TREML4 NFYA TREML3P TFEB TREML2 TREML1 ENSG00000218809 GC06M041280
GH06F041208 1 Ensembl ENCODE 10.1 +8.6 8620 2.4 PKNOX1 ZNF175 CEBPG ZBTB40 ZNF335 IRF9 DIDO1 ZNF584 TRIM24 HLF TREM2 TREML3P ENSG00000218809 TREML2
GH06F041703 1.6 FANTOM5 Ensembl ENCODE 6 -488.5 -488452 5.6 HDGF PKNOX1 WRNIP1 SIN3A ARID4B ZNF48 ZNF2 ZNF143 ZNF207 FOS TFEB PGC UBR2 MDFI TREML3P PRICKLE4 TREM1 GC06M041707 GC06M041708 GC06P041713
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TREML3P on UCSC Golden Path with GeneCards custom track

Genomic Location for TREML3P Gene

Chromosome:
6
Start:
41,208,554 bp from pter
End:
41,217,947 bp from pter
Size:
9,394 bases
Orientation:
Minus strand

Genomic View for TREML3P Gene

Genes around TREML3P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TREML3P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TREML3P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TREML3P Gene

Proteins for TREML3P Gene

Post-translational modifications for TREML3P Gene

No Post-translational modifications

No data available for DME Specific Peptides for TREML3P Gene

Domains & Families for TREML3P Gene

Suggested Antigen Peptide Sequences for TREML3P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for TREML3P Gene

Function for TREML3P Gene

Animal Model Products

miRNA for TREML3P Gene

miRTarBase miRNAs that target TREML3P

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for TREML3P Gene

Localization for TREML3P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TREML3P Gene

Pathways & Interactions for TREML3P Gene

SuperPathways for TREML3P Gene

No Data Available

Interacting Proteins for TREML3P Gene

Gene Ontology (GO) - Biological Process for TREML3P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TREML3P Gene

Transcripts for TREML3P Gene

mRNA/cDNA for TREML3P Gene

(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TREML3P Gene

Triggering receptor expressed on myeloid cells-like 3, pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TREML3P Gene

No ASD Table

Relevant External Links for TREML3P Gene

GeneLoc Exon Structure for
TREML3P
ECgene alternative splicing isoforms for
TREML3P

Expression for TREML3P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TREML3P Gene

mRNA differential expression in normal tissues according to GTEx for TREML3P Gene

This gene is overexpressed in Whole Blood (x46.3).

NURSA nuclear receptor signaling pathways regulating expression of TREML3P Gene:

TREML3P

SOURCE GeneReport for Unigene cluster for TREML3P Gene:

Hs.93698
genes like me logo Genes that share expression patterns with TREML3P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for TREML3P Gene

Orthologs for TREML3P Gene

Evolution for TREML3P Gene

ENSEMBL:
Gene Tree for TREML3P (if available)
TreeFam:
Gene Tree for TREML3P (if available)

No data available for Orthologs for TREML3P Gene

Paralogs for TREML3P Gene

No data available for Paralogs for TREML3P Gene

Variants for TREML3P Gene

Sequence variations from dbSNP and Humsavar for TREML3P Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs111828923 -- 41,218,655(+) GGGAC(G/T)TGGAT upstream-variant-2KB
rs111867556 -- 41,213,345(+) TGAGT(A/G)GTGGG intron-variant
rs111911263 -- 41,217,902(+) ATAGG(A/G)CCCTC nc-transcript-variant
rs111929595 -- 41,215,861(+) ATTCA(A/G)TTTTC intron-variant
rs112032481 -- 41,218,033(+) AGATG(A/C)ATGAC upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for TREML3P Gene

Variant ID Type Subtype PubMed ID
esv3608788 CNV loss 21293372
nsv602970 CNV gain 21841781
nsv823678 CNV loss 20364138

Relevant External Links for TREML3P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TREML3P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TREML3P Gene

Disorders for TREML3P Gene

Relevant External Links for TREML3P

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TREML3P

No disorders were found for TREML3P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TREML3P Gene

Publications for TREML3P Gene

  1. The human TREM gene cluster at 6p21.1 encodes both activating and inhibitory single IgV domain receptors and includes NKp44. (PMID: 12645956) Allcock R.J.N. … Trowsdale J. (Eur. J. Immunol. 2003) 2 3 64

Products for TREML3P Gene

Sources for TREML3P Gene

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