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Aliases for TREML3P Gene

Aliases for TREML3P Gene

  • Triggering Receptor Expressed On Myeloid Cells Like 3, Pseudogene 2 3 5
  • TREM Like Transcript 3 2 3
  • Triggering Receptor Expressed On Myeloid Cells-Like 3, Pseudogene 2
  • Triggering Receptor Expressed On Myeloid Cells-Like 3 2
  • TREML3 3
  • TLT3 3

External Ids for TREML3P Gene

Previous HGNC Symbols for TREML3P Gene

  • TREML3

Summaries for TREML3P Gene

Entrez Gene Summary for TREML3P Gene

  • TREML3 is located in a gene cluster on chromosome 6 with the single Ig variable (IgV) domain activating receptors TREM1 (MIM 605085) and TREM2 (MIM 605086), but it has distinct structural and functional properties (Allcock et al., 2003 [PubMed 12645956]).[supplied by OMIM, Mar 2008]

GeneCards Summary for TREML3P Gene

TREML3P (Triggering Receptor Expressed On Myeloid Cells Like 3, Pseudogene) is a Pseudogene.

Additional gene information for TREML3P Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TREML3P Gene

Genomics for TREML3P Gene

GeneHancer (GH) Regulatory Elements for TREML3P Gene

Promoters and enhancers for TREML3P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I041198 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE dbSUPER 20.1 +16.5 16517 6.2 HDGF ATF1 SMAD1 ARNT TCF12 RUNX3 ZNF263 NCOA1 ZNF592 MBD2 TREML2 TREML4 TREML3P TREM2 USP49 ADCY10P1 NFYA TREML5P TREML1 ENSG00000218809
GH06I041227 Promoter/Enhancer 1.3 EPDnew Ensembl ENCODE 25 -10.6 -10575 1.3 CTCF ZNF639 ZNF654 CEBPB MAFG CEBPG DPF2 ZNF316 CTBP1 NFE2 TREML4 TREML3P RNA5SP207
GH06I041271 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 9.3 -54.2 -54212 2.3 CTCF POLR2A ZFP64 MAX CREB1 MYC ZKSCAN1 GABPA ENSG00000218809 TREM1 TREML4 NFYA TREML3P TFEB TREML2 TREML1 GC06M041280
GH06I041704 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 6 -488.5 -488519 4.9 HDGF PKNOX1 ATF1 ARID4B SIN3A ZNF2 IRF4 ZNF48 ARID2 ZNF207 GC06M041707 GC06M041708 TFEB TAF8 PGC UBR2 MDFI TREML3P ENSG00000124593 TREM1
GH06I041051 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE dbSUPER 5.6 +162.1 162142 8.5 PKNOX1 ATF1 FOXA2 ZNF48 ZNF766 ATF7 NCOA1 MEF2D MIER3 SMARCA4 APOBEC2 ADCY10P1 TREML3P NFYA OARD1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TREML3P on UCSC Golden Path with GeneCards custom track

Genomic Locations for TREML3P Gene

Genomic Locations for TREML3P Gene
chr6:41,208,554-41,217,947
(GRCh38/hg38)
Size:
9,394 bases
Orientation:
Minus strand
chr6:41,176,292-41,190,382
(GRCh37/hg19)

Genomic View for TREML3P Gene

Genes around TREML3P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TREML3P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TREML3P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TREML3P Gene

Proteins for TREML3P Gene

Post-translational modifications for TREML3P Gene

No Post-translational modifications

No data available for DME Specific Peptides for TREML3P Gene

Domains & Families for TREML3P Gene

Suggested Antigen Peptide Sequences for TREML3P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for TREML3P Gene

Function for TREML3P Gene

Phenotypes From GWAS Catalog for TREML3P Gene

Animal Model Products

miRNA for TREML3P Gene

miRTarBase miRNAs that target TREML3P

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for TREML3P Gene

Localization for TREML3P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TREML3P Gene

Pathways & Interactions for TREML3P Gene

SuperPathways for TREML3P Gene

No Data Available

Interacting Proteins for TREML3P Gene

Gene Ontology (GO) - Biological Process for TREML3P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TREML3P Gene

Drugs & Compounds for TREML3P Gene

No Compound Related Data Available

Transcripts for TREML3P Gene

mRNA/cDNA for TREML3P Gene

(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TREML3P Gene

Triggering receptor expressed on myeloid cells-like 3, pseudogene:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TREML3P Gene

No ASD Table

Relevant External Links for TREML3P Gene

GeneLoc Exon Structure for
TREML3P
ECgene alternative splicing isoforms for
TREML3P

Expression for TREML3P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TREML3P Gene

mRNA differential expression in normal tissues according to GTEx for TREML3P Gene

This gene is overexpressed in Whole Blood (x46.3).

NURSA nuclear receptor signaling pathways regulating expression of TREML3P Gene:

TREML3P

SOURCE GeneReport for Unigene cluster for TREML3P Gene:

Hs.93698
genes like me logo Genes that share expression patterns with TREML3P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TREML3P Gene

Orthologs for TREML3P Gene

Evolution for TREML3P Gene

ENSEMBL:
Gene Tree for TREML3P (if available)
TreeFam:
Gene Tree for TREML3P (if available)

No data available for Orthologs for TREML3P Gene

Paralogs for TREML3P Gene

No data available for Paralogs for TREML3P Gene

Variants for TREML3P Gene

Sequence variations from dbSNP and Humsavar for TREML3P Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000045863 -- 41,213,136(-) C/T intron_variant
rs1000065712 -- 41,219,654(-) G/A/C upstream_transcript_variant
rs1000140619 -- 41,218,378(-) A/G upstream_transcript_variant
rs1000261990 -- 41,218,693(-) C/T upstream_transcript_variant
rs1000372164 -- 41,208,710(-) A/G non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for TREML3P Gene

Variant ID Type Subtype PubMed ID
esv3608788 CNV loss 21293372
nsv602970 CNV gain 21841781
nsv823678 CNV loss 20364138

Additional Variant Information for TREML3P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TREML3P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TREML3P Gene

Disorders for TREML3P Gene

Additional Disease Information for TREML3P

No disorders were found for TREML3P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TREML3P Gene

Publications for TREML3P Gene

  1. The human TREM gene cluster at 6p21.1 encodes both activating and inhibitory single IgV domain receptors and includes NKp44. (PMID: 12645956) Allcock RJ … Trowsdale J (European journal of immunology 2003) 2 3 58

Products for TREML3P Gene

Sources for TREML3P Gene

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