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Aliases for TRE-TTC9-1 Gene

Subcategory (RNA class) for TRE-TTC9-1 Gene

non-coding RNA

Quality Score for this RNA gene is

2

Aliases for TRE-TTC9-1 Gene

  • Transfer RNA-Glu (TTC) 9-1 2 3
  • Transfer RNA Glutamic Acid 40 (Anticodon UUC) Pseudogene 2 3
  • TRNA-Glu-TTC-9-1 3
  • TRNAE40P 3

External Ids for TRE-TTC9-1 Gene

Previous HGNC Symbols for TRE-TTC9-1 Gene

  • TRNAE40P

Summaries for TRE-TTC9-1 Gene

GeneCards Summary for TRE-TTC9-1 Gene

TRE-TTC9-1 (Transfer RNA-Glu (TTC) 9-1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRE-TTC9-1 Gene

Genomics for TRE-TTC9-1 Gene

Regulatory Elements for TRE-TTC9-1 Gene

Enhancers for TRE-TTC9-1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02G203347 0.8 ENCODE 0.4 +17.0 16966 0.2 HDAC1 LEF1 PKNOX1 TAL1 TCF12 FOXM1 GATA2 NCOR1 TRIM24 SMARCE1 ENSG00000256458 TRE-TTC9-1
GH02G203352 0.7 ENCODE 0.4 +11.5 11466 0.2 PKNOX1 FOXA2 ZHX2 DPF2 PPARG FOXA1 GATA3 ZNF629 CEBPA CREB1 TRE-TTC9-1 ENSG00000256458
GH02G203340 0.9 Ensembl ENCODE 0.3 +23.3 23322 2.0 TEAD4 SIN3A CHD7 FOXA1 CTBP1 GATA3 ZNF316 SMARCA4 POU5F1 CREB1 ENSG00000256458 TRE-TTC9-1
GH02G203396 0.7 ENCODE 0.3 -32.4 -32435 0.2 HDGF CTCF TEAD1 TEAD4 CHD7 RAD21 ZKSCAN1 TEAD3 ZNF692 ZNF341 PIR60558 TRE-TTC9-1
GH02G203403 0.5 ENCODE 0.3 -39.5 -39453 1.3 CTCF JUND JUN GLIS1 FOS CARF FAM117B CYP20A1 PIR60558 TRE-TTC9-1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TRE-TTC9-1 on UCSC Golden Path with GeneCards custom track

Genomic Location for TRE-TTC9-1 Gene

Chromosome:
2
Start:
203,364,408 bp from pter
End:
203,364,478 bp from pter
Size:
71 bases
Orientation:
Minus strand

Genomic View for TRE-TTC9-1 Gene

Genes around TRE-TTC9-1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRE-TTC9-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRE-TTC9-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRE-TTC9-1 Gene

Proteins for TRE-TTC9-1 Gene

Post-translational modifications for TRE-TTC9-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRE-TTC9-1 Gene

Domains & Families for TRE-TTC9-1 Gene

Gene Families for TRE-TTC9-1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRE-TTC9-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRE-TTC9-1 Gene

Function for TRE-TTC9-1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRE-TTC9-1 Gene

Localization for TRE-TTC9-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TRE-TTC9-1 Gene

Pathways & Interactions for TRE-TTC9-1 Gene

SuperPathways for TRE-TTC9-1 Gene

No Data Available

Interacting Proteins for TRE-TTC9-1 Gene

Gene Ontology (GO) - Biological Process for TRE-TTC9-1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRE-TTC9-1 Gene

Transcripts for TRE-TTC9-1 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for TRE-TTC9-1 Gene

No ASD Table

Relevant External Links for TRE-TTC9-1 Gene

GeneLoc Exon Structure for
TRE-TTC9-1
ECgene alternative splicing isoforms for
TRE-TTC9-1

No data available for mRNA/cDNA for TRE-TTC9-1 Gene

Expression for TRE-TTC9-1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRE-TTC9-1 Gene

Orthologs for TRE-TTC9-1 Gene

No data available for Orthologs and Evolution for TRE-TTC9-1 Gene

Paralogs for TRE-TTC9-1 Gene

No data available for Paralogs for TRE-TTC9-1 Gene

Variants for TRE-TTC9-1 Gene

Relevant External Links for TRE-TTC9-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRE-TTC9-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRE-TTC9-1 Gene

Disorders for TRE-TTC9-1 Gene

No disorders were found for TRE-TTC9-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRE-TTC9-1 Gene

Publications for TRE-TTC9-1 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan P.P. … Lowe T.M. (Nucleic Acids Res. 2009) 3 64

Products for TRE-TTC9-1 Gene

Sources for TRE-TTC9-1 Gene

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