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Aliases for TRE-TTC3-1 Gene

Subcategory (RNA class) for TRE-TTC3-1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TRE-TTC3-1 Gene

  • Transfer RNA-Glu (TTC) 3-1 2 3
  • Transfer RNA Glutamic Acid 1 (Anticodon UUC) 2 3
  • Transfer RNA Glutamic Acid (Anticodon UUC) 3
  • TRNA Glutamic Acid (Anticodon UUC) 3
  • TRNA Glutamic Acid 2
  • TRNA-Glu-TTC-3-1 3
  • RP11-108M9.3 5
  • TRNAE1 3
  • TRNE 3
  • TRE 3

External Ids for TRE-TTC3-1 Gene

Previous HGNC Symbols for TRE-TTC3-1 Gene

  • TRE
  • TRNAE1

Previous GeneCards Identifiers for TRE-TTC3-1 Gene

  • GC01P016874
  • GC01P016878
  • GC01P016882
  • GC01P016885

Summaries for TRE-TTC3-1 Gene

GeneCards Summary for TRE-TTC3-1 Gene

TRE-TTC3-1 (Transfer RNA-Glu (TTC) 3-1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRE-TTC3-1 Gene

Genomics for TRE-TTC3-1 Gene

Regulatory Elements for TRE-TTC3-1 Gene

Enhancers for TRE-TTC3-1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F016677 0.6 Ensembl ENCODE 14.2 -192.9 -192851 1.0 ARNT MLX ARID4B SIN3A ZNF2 FOS KLF13 SP3 KAT8 SSRP1 ENSG00000237938 MST1L TRE-TTC3-1 SPEN MFAP2 ESPNP ENSG00000224621 RPS16P1 RCC2 CROCC
GH01F016680 0.7 Ensembl 12.5 -190.1 -190111 1.7 SMARCA5 SMAD5 RELA POLR2H ZNF316 POLR2A NCOR1 POLR3A IKZF1 ZNF341 TRE-TTC3-1 ESPNP MST1L GC01M016679 PIR33052
GH01F016676 0.9 Ensembl ENCODE 11.4 -193.9 -193926 0.8 SAP130 ZNF384 ZNF316 SCRT2 ADNP EED FOS ZNF600 ZNF652 GATAD2A MST1L TRE-TTC3-1 FAM231A GC01M016679
GH01F016171 1.5 FANTOM5 Ensembl ENCODE 6.4 -692.5 -692528 13.9 HDGF PKNOX1 MLX ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 SPEN RPL22P3 LINC01772 ARHGEF19 EIF1AXP1 EPHA2 FAM131C ENSG00000237938 RPS16P1 MFAP2
GH01F016696 1.6 FANTOM5 Ensembl ENCODE 5.7 -170.6 -170616 7.7 HDGF PKNOX1 ARNT CREB3L1 MLX ARID4B SIN3A FEZF1 ZNF2 YY1 MFAP2 ENSG00000237938 LINC01772 RPS16P1 ZBTB17 RPL22P3 ENSG00000224621 MST1L ESPNP TRE-TTC3-1
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around TRE-TTC3-1 on UCSC Golden Path with GeneCards custom track

Promoters for TRE-TTC3-1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001742066 1755 601 SREBF2 ZNF76 KLF17 SIN3A ZEB1 GLIS2 POLR3A ZNF366 SP3 ZEB2

Genomic Location for TRE-TTC3-1 Gene

Chromosome:
1
Start:
16,870,945 bp from pter
End:
16,874,092 bp from pter
Size:
3,148 bases
Orientation:
Plus strand

Genomic View for TRE-TTC3-1 Gene

Genes around TRE-TTC3-1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRE-TTC3-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRE-TTC3-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRE-TTC3-1 Gene

Proteins for TRE-TTC3-1 Gene

Post-translational modifications for TRE-TTC3-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRE-TTC3-1 Gene

Domains & Families for TRE-TTC3-1 Gene

Gene Families for TRE-TTC3-1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRE-TTC3-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRE-TTC3-1 Gene

Function for TRE-TTC3-1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRE-TTC3-1 Gene

Localization for TRE-TTC3-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TRE-TTC3-1 Gene

Pathways & Interactions for TRE-TTC3-1 Gene

SuperPathways for TRE-TTC3-1 Gene

No Data Available

Interacting Proteins for TRE-TTC3-1 Gene

Gene Ontology (GO) - Biological Process for TRE-TTC3-1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRE-TTC3-1 Gene

Transcripts for TRE-TTC3-1 Gene

mRNA/cDNA for TRE-TTC3-1 Gene

(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TRE-TTC3-1 Gene

No ASD Table

Relevant External Links for TRE-TTC3-1 Gene

GeneLoc Exon Structure for
TRE-TTC3-1
ECgene alternative splicing isoforms for
TRE-TTC3-1

Expression for TRE-TTC3-1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for TRE-TTC3-1 Gene

Orthologs for TRE-TTC3-1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for TRE-TTC3-1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U1 35
  • 100 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia U1 35
  • 58 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia U1 35
  • 55 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Gm25012 35
  • 51 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia U1 35
  • 32 (a)
ManyToMany
chicken
(Gallus gallus)
Aves U1 35
  • 58 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia U1 35
  • 52 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii U1 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35
  • 44 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea U1 35
  • 38 (a)
OneToMany
Species where no ortholog for TRE-TTC3-1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for TRE-TTC3-1 Gene

ENSEMBL:
Gene Tree for TRE-TTC3-1 (if available)
TreeFam:
Gene Tree for TRE-TTC3-1 (if available)

Paralogs for TRE-TTC3-1 Gene

No data available for Paralogs for TRE-TTC3-1 Gene

Variants for TRE-TTC3-1 Gene

Relevant External Links for TRE-TTC3-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRE-TTC3-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRE-TTC3-1 Gene

Disorders for TRE-TTC3-1 Gene

Relevant External Links for TRE-TTC3-1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TRE-TTC3-1

No disorders were found for TRE-TTC3-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TRE-TTC3-1 Gene

Publications for TRE-TTC3-1 Gene

  1. A human tRNAGlu gene of high transcriptional activity. (PMID: 6134271) Goddard J.P. … Smith J.D. (Nucleic Acids Res. 1983) 2 3 64
  2. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan P.P. … Lowe T.M. (Nucleic Acids Res. 2009) 3 64
  3. Chromosomal assignment of a glutamic acid transfer RNA (tRNAGlu) gene to 1p36. (PMID: 2912885) Boyd E. … Connor J.M. (Hum. Genet. 1989) 3 64

Products for TRE-TTC3-1 Gene

Sources for TRE-TTC3-1 Gene

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