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Aliases for TRE-TTC2-1 Gene

Subcategory (RNA class) for TRE-TTC2-1 Gene

tRNA

Quality Score for this RNA gene is

2

Aliases for TRE-TTC2-1 Gene

  • Transfer RNA-Glu (TTC) 2-1 2 3
  • Transfer RNA Glutamic Acid 7 (Anticodon UUC) 2 3
  • TRNA-Glu-TTC-2-1 3
  • TRNAE7 3

External Ids for TRE-TTC2-1 Gene

ORGUL Members for TRE-TTC2-1 Gene

Previous HGNC Symbols for TRE-TTC2-1 Gene

  • TRNAE7

Summaries for TRE-TTC2-1 Gene

GeneCards Summary for TRE-TTC2-1 Gene

TRE-TTC2-1 (Transfer RNA-Glu (TTC) 2-1) is an RNA Gene, and is affiliated with the tRNA class.

Additional gene information for TRE-TTC2-1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRE-TTC2-1 Gene

Genomics for TRE-TTC2-1 Gene

GeneHancer (GH) Regulatory Elements for TRE-TTC2-1 Gene

Promoters and enhancers for TRE-TTC2-1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13I044917 Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 550.8 -0.4 -402 2.8 FEZF1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 SSRP1 ZNF610 TRE-TTC2-1 GPALPP1 RN7SL49P NUFIP1 TSC22D1 RCN1P2 ERICH6B TPT1-AS1 KCTD4 PIR55542
GH13I044920 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.8 -3.8 -3761 2.9 SOX13 PKNOX1 ESRRA FOXA2 SAP130 TEAD3 CTBP1 GATA3 FOSL2 FOS TSC22D1 NUFIP1 PIR55542 TRE-TTC2-1
GH13I044902 Enhancer 1 Ensembl ENCODE dbSUPER 0.4 +13.0 13007 5.6 RFX1 BMI1 RAD21 NR2F2 FOXA1 JUND GATA3 POLR2A FOSL2 FOS TPT1 TPT1-AS1 RN7SL49P LOC105370187 TRE-TTC2-1
GH13I044925 Enhancer 0.3 dbSUPER 0.4 -8.2 -8156 1.5 ZNF121 PIR55542 NUFIP1 TRE-TTC2-1
GH13I044923 Enhancer 0.2 dbSUPER 0.4 -5.5 -5538 0.6 PIR55542 TRE-TTC2-1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TRE-TTC2-1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TRE-TTC2-1 Gene

Genomic Locations for TRE-TTC2-1 Gene
chr13:44,917,927-44,917,998
(GRCh38/hg38)
Size:
72 bases
Orientation:
Minus strand
chr13:45,492,062-45,492,133
(GRCh37/hg19)

Genomic View for TRE-TTC2-1 Gene

Genes around TRE-TTC2-1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRE-TTC2-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRE-TTC2-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRE-TTC2-1 Gene

Proteins for TRE-TTC2-1 Gene

Post-translational modifications for TRE-TTC2-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRE-TTC2-1 Gene

Domains & Families for TRE-TTC2-1 Gene

Gene Families for TRE-TTC2-1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRE-TTC2-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRE-TTC2-1 Gene

Function for TRE-TTC2-1 Gene

Phenotypes From GWAS Catalog for TRE-TTC2-1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRE-TTC2-1 Gene

Localization for TRE-TTC2-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRE-TTC2-1 Gene

Pathways & Interactions for TRE-TTC2-1 Gene

SuperPathways for TRE-TTC2-1 Gene

No Data Available

Interacting Proteins for TRE-TTC2-1 Gene

Gene Ontology (GO) - Biological Process for TRE-TTC2-1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRE-TTC2-1 Gene

Drugs & Compounds for TRE-TTC2-1 Gene

No Compound Related Data Available

Transcripts for TRE-TTC2-1 Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRE-TTC2-1 Gene

No ASD Table

Relevant External Links for TRE-TTC2-1 Gene

GeneLoc Exon Structure for
TRE-TTC2-1
ECgene alternative splicing isoforms for
TRE-TTC2-1

No data available for mRNA/cDNA for TRE-TTC2-1 Gene

Expression for TRE-TTC2-1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRE-TTC2-1 Gene

Orthologs for TRE-TTC2-1 Gene

No data available for Orthologs and Evolution for TRE-TTC2-1 Gene

Paralogs for TRE-TTC2-1 Gene

No data available for Paralogs for TRE-TTC2-1 Gene

Variants for TRE-TTC2-1 Gene

Additional Variant Information for TRE-TTC2-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRE-TTC2-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRE-TTC2-1 Gene

Disorders for TRE-TTC2-1 Gene

No disorders were found for TRE-TTC2-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRE-TTC2-1 Gene

Publications for TRE-TTC2-1 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan PP … Lowe TM (Nucleic acids research 2009) 3 58

Products for TRE-TTC2-1 Gene

Sources for TRE-TTC2-1 Gene

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