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Aliases for TRE-TTC1-2 Gene

Subcategory (RNA class) for TRE-TTC1-2 Gene

non-coding RNA

Quality Score for this RNA gene is

2

Aliases for TRE-TTC1-2 Gene

  • Transfer RNA-Glu (TTC) 1-2 2 3
  • Transfer RNA Glutamic Acid 20 (Anticodon UUC) 2 3
  • Transfer RNA-Glu (TTC) 1-1 2 3
  • TRNA-Glu-TTC-1-1 3
  • TRE-TTC1-1 3
  • TRNAE20 3

External Ids for TRE-TTC1-2 Gene

Previous HGNC Symbols for TRE-TTC1-2 Gene

  • TRNAE20
  • TRE-TTC1-1

Previous GeneCards Identifiers for TRE-TTC1-2 Gene

  • GC02M130337

Summaries for TRE-TTC1-2 Gene

GeneCards Summary for TRE-TTC1-2 Gene

TRE-TTC1-2 (Transfer RNA-Glu (TTC) 1-2) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRE-TTC1-2 Gene

Genomics for TRE-TTC1-2 Gene

Regulatory Elements for TRE-TTC1-2 Gene

Enhancers for TRE-TTC1-2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH13F041052 1.4 FANTOM5 Ensembl ENCODE 0.4 +6.9 6909 3.8 HDGF PKNOX1 BMI1 RAD21 RARA MIXL1 ZNF202 ZNF654 CEBPB TBX21 WBP4 ELF1 RGCC CYCSP34 NAA16 TRE-TTC1-2 GC13M041020 GC13M041024
GH13F041048 1.2 FANTOM5 Ensembl ENCODE 0.4 +10.7 10709 2.6 CTCF PKNOX1 JUN MNT PRDM1 WBP4 ELF1 CYCSP34 RGCC NAA16 TRE-TTC1-2 GC13M041020 GC13M041024
GH13F041032 1.1 Ensembl ENCODE 0.3 +27.7 27658 1.3 SOX13 SAP130 ZNF644 TEAD3 RARA NR2F6 CREM HOMEZ GATAD2A SOX5 WBP4 SUGT1P3 GC13M041020 GC13M041024 TRE-TTC1-2
GH13F041034 0.8 Ensembl ENCODE 0.3 +25.7 25709 1.0 JUN BHLHE40 ZNF600 ATF2 SPI1 WBP4 GC13M041020 GC13M041024 TRE-TTC1-2
GH13F041041 0.5 Ensembl 0.3 +19.3 19309 0.2 PKNOX1 CTBP1 NFE2L2 GC13M041020 GC13M041024 TRE-TTC1-2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TRE-TTC1-2 on UCSC Golden Path with GeneCards custom track

Promoters for TRE-TTC1-2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001509139 -91 4201 HDGF PKNOX1 ARNT CREB3L1 MLX ARID4B SIN3A FEZF1 DMAP1 YY1

Genomic Location for TRE-TTC1-2 Gene

Chromosome:
13
Start:
41,060,738 bp from pter
End:
41,060,809 bp from pter
Size:
72 bases
Orientation:
Minus strand

Genomic View for TRE-TTC1-2 Gene

Genes around TRE-TTC1-2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRE-TTC1-2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRE-TTC1-2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRE-TTC1-2 Gene

Proteins for TRE-TTC1-2 Gene

Post-translational modifications for TRE-TTC1-2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRE-TTC1-2 Gene

Domains & Families for TRE-TTC1-2 Gene

Gene Families for TRE-TTC1-2 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRE-TTC1-2: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRE-TTC1-2 Gene

Function for TRE-TTC1-2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRE-TTC1-2 Gene

Localization for TRE-TTC1-2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TRE-TTC1-2 Gene

Pathways & Interactions for TRE-TTC1-2 Gene

SuperPathways for TRE-TTC1-2 Gene

No Data Available

Interacting Proteins for TRE-TTC1-2 Gene

Gene Ontology (GO) - Biological Process for TRE-TTC1-2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRE-TTC1-2 Gene

Transcripts for TRE-TTC1-2 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for TRE-TTC1-2 Gene

No ASD Table

Relevant External Links for TRE-TTC1-2 Gene

GeneLoc Exon Structure for
TRE-TTC1-2
ECgene alternative splicing isoforms for
TRE-TTC1-2

No data available for mRNA/cDNA for TRE-TTC1-2 Gene

Expression for TRE-TTC1-2 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for TRE-TTC1-2 Gene

Orthologs for TRE-TTC1-2 Gene

No data available for Orthologs and Evolution for TRE-TTC1-2 Gene

Paralogs for TRE-TTC1-2 Gene

No data available for Paralogs for TRE-TTC1-2 Gene

Variants for TRE-TTC1-2 Gene

Relevant External Links for TRE-TTC1-2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRE-TTC1-2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRE-TTC1-2 Gene

Disorders for TRE-TTC1-2 Gene

No disorders were found for TRE-TTC1-2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRE-TTC1-2 Gene

Publications for TRE-TTC1-2 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan P.P. … Lowe T.M. (Nucleic Acids Res. 2009) 3 64

Products for TRE-TTC1-2 Gene

Sources for TRE-TTC1-2 Gene

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