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Aliases for TRE-CTC1-7 Gene

Subcategory (RNA class) for TRE-CTC1-7 Gene

non-coding RNA

Quality Score for this RNA gene is

2

Aliases for TRE-CTC1-7 Gene

  • Transfer RNA-Glu (CTC) 1-7 2 3
  • Transfer RNA Glutamic Acid 19 (Anticodon CUC) 2 3
  • TRNA-Glu-CTC-1-7 3
  • TRNAE19 3

External Ids for TRE-CTC1-7 Gene

Previous HGNC Symbols for TRE-CTC1-7 Gene

  • TRNAE19

Summaries for TRE-CTC1-7 Gene

GeneCards Summary for TRE-CTC1-7 Gene

TRE-CTC1-7 (Transfer RNA-Glu (CTC) 1-7) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for TRE-CTC1-7 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRE-CTC1-7 Gene

Genomics for TRE-CTC1-7 Gene

Regulatory Elements for TRE-CTC1-7 Gene

Enhancers for TRE-CTC1-7 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06H125770 0.8 ENCODE 0.4 +10.3 10309 0 CTCF RAD21 CHAMP1 GATA2 SCRT2 SMC3 ZNF143 ZSCAN29 ATF7 RUNX3 TRE-CTC1-7 LOC105377986
GH06H125759 1 ENCODE dbSUPER 0.3 +21.0 21039 0 CTCF ATF1 RB1 RAD21 MTA3 CTBP1 FOXK2 ZSCAN29 ATF7 CREM HDDC2 HINT3 LOC105377986 TRE-CTC1-7
GH06H125769 0.6 dbSUPER 0.4 +11.0 11001 0 TCF12 CTCF PKNOX1 GATA2 TAL1 SCRT2 MAFG ZNF548 ZNF24 HEY2 RNF217 TRE-CTC1-7 LOC105377986
GH06H125752 0.7 dbSUPER 0.3 +26.7 26733 1 CTCF FOXA2 RNF2 HLF MAX REST RAD21 YY1 FOXA1 ZNF341 HEY2 LOC105377986 HDDC2 HINT3 TRE-CTC1-7
GH06H125773 0.5 dbSUPER 0.4 +6.6 6563 1 PKNOX1 ZNF211 ZNF133 RCOR1 RELA HEY2 TRE-CTC1-7 LOC105377986
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TRE-CTC1-7 on UCSC Golden Path with GeneCards custom track

Promoters for TRE-CTC1-7 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000202242 -583 1800 HNRNPUL1 PKNOX1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143 ZNF207

Genomic Location for TRE-CTC1-7 Gene

Chromosome:
6
Start:
125,780,247 bp from pter
End:
125,780,318 bp from pter
Size:
72 bases
Orientation:
Minus strand

Genomic View for TRE-CTC1-7 Gene

Genes around TRE-CTC1-7 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRE-CTC1-7 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRE-CTC1-7 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRE-CTC1-7 Gene

Proteins for TRE-CTC1-7 Gene

Post-translational modifications for TRE-CTC1-7 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRE-CTC1-7 Gene

Domains & Families for TRE-CTC1-7 Gene

Gene Families for TRE-CTC1-7 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRE-CTC1-7: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRE-CTC1-7 Gene

Function for TRE-CTC1-7 Gene

Phenotypes From GWAS Catalog for TRE-CTC1-7 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for TRE-CTC1-7
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRE-CTC1-7 Gene

Localization for TRE-CTC1-7 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRE-CTC1-7 Gene

Pathways & Interactions for TRE-CTC1-7 Gene

SuperPathways for TRE-CTC1-7 Gene

No Data Available

Interacting Proteins for TRE-CTC1-7 Gene

Gene Ontology (GO) - Biological Process for TRE-CTC1-7 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRE-CTC1-7 Gene

Drugs & Compounds for TRE-CTC1-7 Gene

No Compound Related Data Available

Transcripts for TRE-CTC1-7 Gene

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for TRE-CTC1-7
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for TRE-CTC1-7 Gene

No ASD Table

Relevant External Links for TRE-CTC1-7 Gene

GeneLoc Exon Structure for
TRE-CTC1-7
ECgene alternative splicing isoforms for
TRE-CTC1-7

No data available for mRNA/cDNA for TRE-CTC1-7 Gene

Expression for TRE-CTC1-7 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRE-CTC1-7 Gene

Orthologs for TRE-CTC1-7 Gene

No data available for Orthologs and Evolution for TRE-CTC1-7 Gene

Paralogs for TRE-CTC1-7 Gene

No data available for Paralogs for TRE-CTC1-7 Gene

Variants for TRE-CTC1-7 Gene

Relevant External Links for TRE-CTC1-7 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRE-CTC1-7

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRE-CTC1-7 Gene

Disorders for TRE-CTC1-7 Gene

No disorders were found for TRE-CTC1-7 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRE-CTC1-7 Gene

Publications for TRE-CTC1-7 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan PP … Lowe TM (Nucleic acids research 2009) 3 60

Products for TRE-CTC1-7 Gene

Sources for TRE-CTC1-7 Gene

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