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Aliases for TRE-CTC1-1 Gene

Subcategory (RNA class) for TRE-CTC1-1 Gene

non-coding RNA

Quality Score for this RNA gene is

2

Aliases for TRE-CTC1-1 Gene

  • Transfer RNA-Glu (CTC) 1-1 2 3
  • Transfer RNA Glutamic Acid 21 (Anticodon CUC) 2 3
  • TRNA-Glu-CTC-1-1 3
  • TRNAE21 3

External Ids for TRE-CTC1-1 Gene

Previous HGNC Symbols for TRE-CTC1-1 Gene

  • TRNAE21

Summaries for TRE-CTC1-1 Gene

GeneCards Summary for TRE-CTC1-1 Gene

TRE-CTC1-1 (Transfer RNA-Glu (CTC) 1-1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRE-CTC1-1 Gene

Genomics for TRE-CTC1-1 Gene

Regulatory Elements for TRE-CTC1-1 Gene

Enhancers for TRE-CTC1-1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01G146032 0.9 Ensembl ENCODE 0.7 -2.8 -2837 0.3 CTCF LEF1 ZNF654 ARNT TRIM22 REST RAD21 FOXK2 SMC3 TCF7L2 TXNIP LIX1L-AS1 RBM8A ANKRD35 TRE-CTC1-1
GH01G146019 1.5 Ensembl ENCODE dbSUPER 0.4 -14.4 -14388 3.2 HDGF PKNOX1 ARNT ARID4B YY1 TCF12 GTF3C2 FOS NCOA1 MIER2 POLR3C ANKRD35 TRE-CTC1-1 TXNIP
GH01G146005 1.5 Ensembl ENCODE dbSUPER 0.3 -28.8 -28818 2.4 HDGF ARNT ZNF2 ZNF121 ZNF766 ZNF143 REST TBX21 ZNF592 MAFF ENSG00000213240 PEX11B GNRHR2 ITGA10 ANKRD35 LINC01719 TXNIP TRE-CTC1-1
GH01G146001 1.4 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -34.1 -34092 0.8 CTBP1 GATA3 CEBPB ZBTB33 DPF2 FOXA1 LINC01719 NOTCH2NL NBPF10 TXNIP TRE-CTC1-1
GH01G146013 1.2 Ensembl ENCODE 0.3 -22.5 -22492 0.4 HDGF PKNOX1 ATF1 FOXA2 SIN3A ZNF2 ELK1 GATA2 ZNF143 FOS TXNIP TRE-CTC1-1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TRE-CTC1-1 on UCSC Golden Path with GeneCards custom track

Promoters for TRE-CTC1-1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000012962 1708 4801 MLX CREB3L1 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF548 SP3 TBX21

Genomic Location for TRE-CTC1-1 Gene

Chromosome:
1
Start:
146,035,692 bp from pter
End:
146,035,763 bp from pter
Size:
72 bases
Orientation:
Plus strand

Genomic View for TRE-CTC1-1 Gene

Genes around TRE-CTC1-1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRE-CTC1-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRE-CTC1-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRE-CTC1-1 Gene

Proteins for TRE-CTC1-1 Gene

Post-translational modifications for TRE-CTC1-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRE-CTC1-1 Gene

Domains & Families for TRE-CTC1-1 Gene

Gene Families for TRE-CTC1-1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRE-CTC1-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRE-CTC1-1 Gene

Function for TRE-CTC1-1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRE-CTC1-1 Gene

Localization for TRE-CTC1-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TRE-CTC1-1 Gene

Pathways & Interactions for TRE-CTC1-1 Gene

SuperPathways for TRE-CTC1-1 Gene

No Data Available

Interacting Proteins for TRE-CTC1-1 Gene

Gene Ontology (GO) - Biological Process for TRE-CTC1-1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRE-CTC1-1 Gene

Drugs & Compounds for TRE-CTC1-1 Gene

No Compound Related Data Available

Transcripts for TRE-CTC1-1 Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRE-CTC1-1 Gene

No ASD Table

Relevant External Links for TRE-CTC1-1 Gene

GeneLoc Exon Structure for
TRE-CTC1-1
ECgene alternative splicing isoforms for
TRE-CTC1-1

No data available for mRNA/cDNA for TRE-CTC1-1 Gene

Expression for TRE-CTC1-1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRE-CTC1-1 Gene

Orthologs for TRE-CTC1-1 Gene

No data available for Orthologs and Evolution for TRE-CTC1-1 Gene

Paralogs for TRE-CTC1-1 Gene

No data available for Paralogs for TRE-CTC1-1 Gene

Variants for TRE-CTC1-1 Gene

Relevant External Links for TRE-CTC1-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRE-CTC1-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRE-CTC1-1 Gene

Disorders for TRE-CTC1-1 Gene

No disorders were found for TRE-CTC1-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRE-CTC1-1 Gene

Publications for TRE-CTC1-1 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan P.P. … Lowe T.M. (Nucleic Acids Res. 2009) 3 64

Products for TRE-CTC1-1 Gene

Sources for TRE-CTC1-1 Gene

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