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Aliases for TRD-GTC2-1 Gene

Subcategory (RNA class) for TRD-GTC2-1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TRD-GTC2-1 Gene

  • Transfer RNA-Asp (GTC) 2-1 2 3
  • Transfer RNA Aspartic Acid 18 (Anticodon GUC) 2 3
  • TRNA-Asp-GTC-2-1 3
  • RP11-122G18.11 5
  • TRNAD18 3

External Ids for TRD-GTC2-1 Gene

Previous HGNC Symbols for TRD-GTC2-1 Gene

  • TRNAD18

Previous GeneCards Identifiers for TRD-GTC2-1 Gene

  • GC01M161443
  • GC01M161445
  • GC01M161452

Summaries for TRD-GTC2-1 Gene

GeneCards Summary for TRD-GTC2-1 Gene

TRD-GTC2-1 (Transfer RNA-Asp (GTC) 2-1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRD-GTC2-1 Gene

Genomics for TRD-GTC2-1 Gene

Regulatory Elements for TRD-GTC2-1 Gene

Enhancers for TRD-GTC2-1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01G161439 1.1 ENCODE 0.7 +0.7 688 1.3 HDGF PKNOX1 ARNT CREB3L1 SIN3A FEZF1 ZNF2 CBX5 ZNF143 ZNF207 FCGR2C SDHC RPS23P10 GC01M161459 TRD-GTC2-1 TRG-TCC4-1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TRD-GTC2-1 on UCSC Golden Path with GeneCards custom track

Promoters for TRD-GTC2-1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000254928 396 801 HDGF PKNOX1 ARNT CREB3L1 SIN3A FEZF1 ZNF2 CBX5 ZNF143 ZNF207

Genomic Location for TRD-GTC2-1 Gene

Chromosome:
1
Start:
161,433,444 bp from pter
End:
161,440,996 bp from pter
Size:
7,553 bases
Orientation:
Minus strand

Genomic View for TRD-GTC2-1 Gene

Genes around TRD-GTC2-1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRD-GTC2-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRD-GTC2-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRD-GTC2-1 Gene

Proteins for TRD-GTC2-1 Gene

Post-translational modifications for TRD-GTC2-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRD-GTC2-1 Gene

Domains & Families for TRD-GTC2-1 Gene

Gene Families for TRD-GTC2-1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRD-GTC2-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRD-GTC2-1 Gene

Function for TRD-GTC2-1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRD-GTC2-1 Gene

Localization for TRD-GTC2-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TRD-GTC2-1 Gene

Pathways & Interactions for TRD-GTC2-1 Gene

SuperPathways for TRD-GTC2-1 Gene

No Data Available

Interacting Proteins for TRD-GTC2-1 Gene

Gene Ontology (GO) - Biological Process for TRD-GTC2-1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRD-GTC2-1 Gene

Drugs & Compounds for TRD-GTC2-1 Gene

No Compound Related Data Available

Transcripts for TRD-GTC2-1 Gene

mRNA/cDNA for TRD-GTC2-1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRD-GTC2-1 Gene

No ASD Table

Relevant External Links for TRD-GTC2-1 Gene

GeneLoc Exon Structure for
TRD-GTC2-1
ECgene alternative splicing isoforms for
TRD-GTC2-1

Expression for TRD-GTC2-1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRD-GTC2-1 Gene

Orthologs for TRD-GTC2-1 Gene

Evolution for TRD-GTC2-1 Gene

ENSEMBL:
Gene Tree for TRD-GTC2-1 (if available)
TreeFam:
Gene Tree for TRD-GTC2-1 (if available)

No data available for Orthologs for TRD-GTC2-1 Gene

Paralogs for TRD-GTC2-1 Gene

No data available for Paralogs for TRD-GTC2-1 Gene

Variants for TRD-GTC2-1 Gene

Relevant External Links for TRD-GTC2-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRD-GTC2-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRD-GTC2-1 Gene

Disorders for TRD-GTC2-1 Gene

No disorders were found for TRD-GTC2-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRD-GTC2-1 Gene

Publications for TRD-GTC2-1 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan P.P. … Lowe T.M. (Nucleic Acids Res. 2009) 3 64

Products for TRD-GTC2-1 Gene

Sources for TRD-GTC2-1 Gene

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