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Aliases for TRD-GTC10-1 Gene

Subcategory (RNA class) for TRD-GTC10-1 Gene

non-coding RNA

Quality Score for this RNA gene is

2

Aliases for TRD-GTC10-1 Gene

  • Transfer RNA-Asp (GTC) 10-1 2 3
  • Transfer RNA Aspartic Acid 20 (Anticodon GUC) Pseudogene 2 3
  • TRNA-Asp-GTC-10-1 3
  • TRNAD20P 3

External Ids for TRD-GTC10-1 Gene

Previous HGNC Symbols for TRD-GTC10-1 Gene

  • TRNAD20P

Summaries for TRD-GTC10-1 Gene

GeneCards Summary for TRD-GTC10-1 Gene

TRD-GTC10-1 (Transfer RNA-Asp (GTC) 10-1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRD-GTC10-1 Gene

Genomics for TRD-GTC10-1 Gene

Regulatory Elements for TRD-GTC10-1 Gene

Enhancers for TRD-GTC10-1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F161512 0.9 Ensembl ENCODE 0.4 -9.8 -9805 1.9 KLF1 ZNF316 NR4A1 BHLHE40 KLF17 EMSY WT1 FCGR2C FCRLA ENSG00000273112 TRD-GTC10-1
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around TRD-GTC10-1 on UCSC Golden Path with GeneCards custom track

Promoters for TRD-GTC10-1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000167166 1355 1801 ARNT ZNF48 BRCA1 ZNF2 GTF3C2 ZNF766 GLIS2 FOS KLF13 ZNF202

Genomic Location for TRD-GTC10-1 Gene

Chromosome:
1
Start:
161,523,145 bp from pter
End:
161,523,216 bp from pter
Size:
72 bases
Orientation:
Plus strand

Genomic View for TRD-GTC10-1 Gene

Genes around TRD-GTC10-1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRD-GTC10-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRD-GTC10-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRD-GTC10-1 Gene

Proteins for TRD-GTC10-1 Gene

Post-translational modifications for TRD-GTC10-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRD-GTC10-1 Gene

Domains & Families for TRD-GTC10-1 Gene

Gene Families for TRD-GTC10-1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRD-GTC10-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRD-GTC10-1 Gene

Function for TRD-GTC10-1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRD-GTC10-1 Gene

Localization for TRD-GTC10-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TRD-GTC10-1 Gene

Pathways & Interactions for TRD-GTC10-1 Gene

SuperPathways for TRD-GTC10-1 Gene

No Data Available

Interacting Proteins for TRD-GTC10-1 Gene

Gene Ontology (GO) - Biological Process for TRD-GTC10-1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRD-GTC10-1 Gene

Transcripts for TRD-GTC10-1 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for TRD-GTC10-1 Gene

No ASD Table

Relevant External Links for TRD-GTC10-1 Gene

GeneLoc Exon Structure for
TRD-GTC10-1
ECgene alternative splicing isoforms for
TRD-GTC10-1

No data available for mRNA/cDNA for TRD-GTC10-1 Gene

Expression for TRD-GTC10-1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for TRD-GTC10-1 Gene

Orthologs for TRD-GTC10-1 Gene

No data available for Orthologs and Evolution for TRD-GTC10-1 Gene

Paralogs for TRD-GTC10-1 Gene

No data available for Paralogs for TRD-GTC10-1 Gene

Variants for TRD-GTC10-1 Gene

Relevant External Links for TRD-GTC10-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRD-GTC10-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRD-GTC10-1 Gene

Disorders for TRD-GTC10-1 Gene

No disorders were found for TRD-GTC10-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRD-GTC10-1 Gene

Publications for TRD-GTC10-1 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan P.P. … Lowe T.M. (Nucleic Acids Res. 2009) 3 64

Products for TRD-GTC10-1 Gene

Sources for TRD-GTC10-1 Gene

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