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Aliases for TRC-GCA2-3 Gene

Subcategory (RNA class) for TRC-GCA2-3 Gene

non-coding RNA

Quality Score for this RNA gene is

2

Aliases for TRC-GCA2-3 Gene

  • Transfer RNA-Cys (GCA) 2-3 2 3
  • Transfer RNA Cysteine 9 (Anticodon GCA) 2 3
  • Transfer RNA-Cys (GCA) 2-2 2 3
  • TRNA-Cys-GCA-2-2 3
  • TRC-GCA2-2 3
  • TRNAC9 3

External Ids for TRC-GCA2-3 Gene

Previous HGNC Symbols for TRC-GCA2-3 Gene

  • TRNAC9
  • TRC-GCA2-2

Summaries for TRC-GCA2-3 Gene

GeneCards Summary for TRC-GCA2-3 Gene

TRC-GCA2-3 (Transfer RNA-Cys (GCA) 2-3) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRC-GCA2-3 Gene

Genomics for TRC-GCA2-3 Gene

Regulatory Elements for TRC-GCA2-3 Gene

Enhancers for TRC-GCA2-3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17F039151 0.5 ENCODE 0.8 +0.3 287 3.5 ARNT MLX WRNIP1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 CDK12 ENSG00000275665 ENSG00000266469 SNORA21 MED1 ENSG00000277969 ENSG00000275532 PGAP3 TRC-GCA2-3 PIR45010
GH17F039143 1.1 Ensembl ENCODE 0.4 +9.5 9461 2.2 ATF1 PKNOX1 FEZF1 ZNF335 ZNF366 SCRT2 FOS CREM ZNF263 ZFP69B TRC-GCA2-3 PIR45010
GH17F039138 0.6 Ensembl ENCODE 0.4 +14.7 14704 1.9 JUN SMARCC2 ZNF143 RCOR1 FOS MAFK DEK TCF7L2 NFE2L2 SMARCC1 LRRC37A11P TRC-GCA2-3 PIR45010
GH17F039131 0.9 Ensembl ENCODE 0.3 +21.7 21682 1.0 MAFG BACH1 ARID1B ZNF316 JUND MAFF IKZF1 NFE2L1 PRDM10 FOS PLXDC1 TRC-GCA2-3 PIR45010
GH17F039114 0.5 Ensembl ENCODE 0.3 +38.7 38729 1.0 RNF2 L3MBTL2 BHLHE40 MAFG ZNF316 IKZF1 NFE2L1 PRDM10 NFE2 EMSY PLXDC1 PIR45010 TRC-GCA2-3
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around TRC-GCA2-3 on UCSC Golden Path with GeneCards custom track

Promoters for TRC-GCA2-3 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001345598 505 4200 ARNT MLX WRNIP1 ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1

Genomic Location for TRC-GCA2-3 Gene

Chromosome:
17
Start:
39,153,734 bp from pter
End:
39,153,805 bp from pter
Size:
72 bases
Orientation:
Minus strand

Genomic View for TRC-GCA2-3 Gene

Genes around TRC-GCA2-3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRC-GCA2-3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRC-GCA2-3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRC-GCA2-3 Gene

Proteins for TRC-GCA2-3 Gene

Post-translational modifications for TRC-GCA2-3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRC-GCA2-3 Gene

Domains & Families for TRC-GCA2-3 Gene

Gene Families for TRC-GCA2-3 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRC-GCA2-3: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRC-GCA2-3 Gene

Function for TRC-GCA2-3 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRC-GCA2-3 Gene

Localization for TRC-GCA2-3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TRC-GCA2-3 Gene

Pathways & Interactions for TRC-GCA2-3 Gene

SuperPathways for TRC-GCA2-3 Gene

No Data Available

Interacting Proteins for TRC-GCA2-3 Gene

Gene Ontology (GO) - Biological Process for TRC-GCA2-3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRC-GCA2-3 Gene

Transcripts for TRC-GCA2-3 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for TRC-GCA2-3 Gene

No ASD Table

Relevant External Links for TRC-GCA2-3 Gene

GeneLoc Exon Structure for
TRC-GCA2-3
ECgene alternative splicing isoforms for
TRC-GCA2-3

No data available for mRNA/cDNA for TRC-GCA2-3 Gene

Expression for TRC-GCA2-3 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for TRC-GCA2-3 Gene

Orthologs for TRC-GCA2-3 Gene

No data available for Orthologs and Evolution for TRC-GCA2-3 Gene

Paralogs for TRC-GCA2-3 Gene

No data available for Paralogs for TRC-GCA2-3 Gene

Variants for TRC-GCA2-3 Gene

Relevant External Links for TRC-GCA2-3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRC-GCA2-3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRC-GCA2-3 Gene

Disorders for TRC-GCA2-3 Gene

No disorders were found for TRC-GCA2-3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRC-GCA2-3 Gene

Publications for TRC-GCA2-3 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan P.P. … Lowe T.M. (Nucleic Acids Res. 2009) 3 64

Products for TRC-GCA2-3 Gene

Sources for TRC-GCA2-3 Gene

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