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Aliases for TRC-GCA2-3 Gene

Subcategory (RNA class) for TRC-GCA2-3 Gene

non-coding RNA

Quality Score for this RNA gene is

2

Aliases for TRC-GCA2-3 Gene

  • Transfer RNA-Cys (GCA) 2-3 2 3
  • Transfer RNA Cysteine 9 (Anticodon GCA) 2 3
  • Transfer RNA-Cys (GCA) 2-2 2 3
  • TRNA-Cys-GCA-2-2 3
  • TRC-GCA2-2 3
  • TRNAC9 3

External Ids for TRC-GCA2-3 Gene

Previous HGNC Symbols for TRC-GCA2-3 Gene

  • TRNAC9
  • TRC-GCA2-2

Summaries for TRC-GCA2-3 Gene

GeneCards Summary for TRC-GCA2-3 Gene

TRC-GCA2-3 (Transfer RNA-Cys (GCA) 2-3) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for TRC-GCA2-3 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRC-GCA2-3 Gene

Genomics for TRC-GCA2-3 Gene

Regulatory Elements for TRC-GCA2-3 Gene

Enhancers for TRC-GCA2-3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17H039151 1.4 ENCODE dbSUPER 0.7 +0.3 287 3 MLX ZFP64 DMAP1 YY1 SLC30A9 ZNF143 SP3 MCM3 NFYC ZFP41 MED1 CDK12 LOC105371762 MED24 THRA SNORA21 SNORD124 LOC105371763 RPL23 RPL19
GH17H039143 1.1 Ensembl ENCODE dbSUPER 0.4 +9.5 9461 2 ZFP69B ZNF692 BHLHE40 FOS MNT FOXP2 TRC-GCA2-3 PIR45010
GH17H039118 1 Ensembl ENCODE 0.3 +34.8 34832 0 PKNOX1 BMI1 RFX5 EED NFYB ZNF207 FOS ATF7 IKZF2 CREM PLXDC1 PIR45010 TRC-GCA2-3
GH17H039138 0.7 ENCODE 0.4 +14.7 14704 1 JUN FOSL1 SMARCC2 ZNF143 RCOR1 FOS MAFK DEK TCF7L2 SMARCC1 LRRC37A11P TRC-GCA2-3 PIR45010
GH17H039131 0.9 Ensembl ENCODE 0.3 +21.7 21682 1 MAFG BACH1 FOSL1 ZNF316 MAFF SMARCA4 IKZF1 FOS NFE2 PRDM10 PLXDC1 TRC-GCA2-3 PIR45010
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TRC-GCA2-3 on UCSC Golden Path with GeneCards custom track

Promoters for TRC-GCA2-3 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000093886 -195 2401 MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 SP3 MCM3 NFYC

Genomic Location for TRC-GCA2-3 Gene

Chromosome:
17
Start:
39,153,734 bp from pter
End:
39,153,805 bp from pter
Size:
72 bases
Orientation:
Minus strand

Genomic View for TRC-GCA2-3 Gene

Genes around TRC-GCA2-3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRC-GCA2-3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRC-GCA2-3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRC-GCA2-3 Gene

Proteins for TRC-GCA2-3 Gene

Post-translational modifications for TRC-GCA2-3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRC-GCA2-3 Gene

Domains & Families for TRC-GCA2-3 Gene

Gene Families for TRC-GCA2-3 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRC-GCA2-3: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRC-GCA2-3 Gene

Function for TRC-GCA2-3 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for TRC-GCA2-3
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRC-GCA2-3 Gene

Localization for TRC-GCA2-3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRC-GCA2-3 Gene

Pathways & Interactions for TRC-GCA2-3 Gene

SuperPathways for TRC-GCA2-3 Gene

No Data Available

Interacting Proteins for TRC-GCA2-3 Gene

Gene Ontology (GO) - Biological Process for TRC-GCA2-3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRC-GCA2-3 Gene

Drugs & Compounds for TRC-GCA2-3 Gene

No Compound Related Data Available

Transcripts for TRC-GCA2-3 Gene

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for TRC-GCA2-3
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for TRC-GCA2-3 Gene

No ASD Table

Relevant External Links for TRC-GCA2-3 Gene

GeneLoc Exon Structure for
TRC-GCA2-3
ECgene alternative splicing isoforms for
TRC-GCA2-3

No data available for mRNA/cDNA for TRC-GCA2-3 Gene

Expression for TRC-GCA2-3 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRC-GCA2-3 Gene

Orthologs for TRC-GCA2-3 Gene

No data available for Orthologs and Evolution for TRC-GCA2-3 Gene

Paralogs for TRC-GCA2-3 Gene

No data available for Paralogs for TRC-GCA2-3 Gene

Variants for TRC-GCA2-3 Gene

Relevant External Links for TRC-GCA2-3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRC-GCA2-3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRC-GCA2-3 Gene

Disorders for TRC-GCA2-3 Gene

No disorders were found for TRC-GCA2-3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRC-GCA2-3 Gene

Publications for TRC-GCA2-3 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan PP … Lowe TM (Nucleic acids research 2009) 3 60

Products for TRC-GCA2-3 Gene

Sources for TRC-GCA2-3 Gene

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