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Aliases for TRC-GCA2-1 Gene

Subcategory (RNA class) for TRC-GCA2-1 Gene

non-coding RNA

Quality Score for this RNA gene is

2

Aliases for TRC-GCA2-1 Gene

  • Transfer RNA-Cys (GCA) 2-1 2 3
  • Transfer RNA Cysteine 16 (Anticodon GCA) 2 3
  • Transfer RNA-Cys (GCA) 2-4 2 3
  • TRNA-Cys-GCA-2-4 3
  • TRC-GCA2-4 3
  • TRNAC16 3

External Ids for TRC-GCA2-1 Gene

Previous HGNC Symbols for TRC-GCA2-1 Gene

  • TRNAC16
  • TRC-GCA2-4

Previous GeneCards Identifiers for TRC-GCA2-1 Gene

  • GC17P038867

Summaries for TRC-GCA2-1 Gene

GeneCards Summary for TRC-GCA2-1 Gene

TRC-GCA2-1 (Transfer RNA-Cys (GCA) 2-1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRC-GCA2-1 Gene

Genomics for TRC-GCA2-1 Gene

Regulatory Elements for TRC-GCA2-1 Gene

Enhancers for TRC-GCA2-1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH04F123508 0.8 ENCODE 0.8 +0.1 141 0.2 CTCF TBP KLF1 SREBF2 ZBTB40 BCL11B HIC1 POLR3A PATZ1 SCRT2 TRC-GCA2-1 PIR51287 PIR75522
GH04F123525 0.8 ENCODE 0.3 -16.5 -16520 0.2 SOX13 ELF3 SAP130 RAD21 RARA MIXL1 SOX5 GATAD2A KLF6 HLF TRC-GCA2-1 PIR75522 GC04P123546
GH04F123528 0.8 ENCODE 0.3 -20.3 -20275 1.8 SOX13 ELF3 ZNF792 SAP130 ZNF644 RARA ZNF316 MAFK HOMEZ MIXL1 GC04P123546 TRC-GCA2-1 PIR75522
GH04F123535 0.5 Ensembl ENCODE 0.3 -27.4 -27371 0.6 GC04P123546 PIR75522 TRC-GCA2-1
GH04F123521 0.2 ENCODE 0.4 -13.9 -13877 1.7 SPRY1 TRC-GCA2-1 PIR75522 GC04P123546
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TRC-GCA2-1 on UCSC Golden Path with GeneCards custom track

Genomic Location for TRC-GCA2-1 Gene

Chromosome:
4
Start:
123,508,850 bp from pter
End:
123,508,921 bp from pter
Size:
72 bases
Orientation:
Minus strand

Genomic View for TRC-GCA2-1 Gene

Genes around TRC-GCA2-1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRC-GCA2-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRC-GCA2-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRC-GCA2-1 Gene

Proteins for TRC-GCA2-1 Gene

Post-translational modifications for TRC-GCA2-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRC-GCA2-1 Gene

Domains & Families for TRC-GCA2-1 Gene

Gene Families for TRC-GCA2-1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRC-GCA2-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRC-GCA2-1 Gene

Function for TRC-GCA2-1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRC-GCA2-1 Gene

Localization for TRC-GCA2-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TRC-GCA2-1 Gene

Pathways & Interactions for TRC-GCA2-1 Gene

SuperPathways for TRC-GCA2-1 Gene

No Data Available

Interacting Proteins for TRC-GCA2-1 Gene

Gene Ontology (GO) - Biological Process for TRC-GCA2-1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRC-GCA2-1 Gene

Transcripts for TRC-GCA2-1 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for TRC-GCA2-1 Gene

No ASD Table

Relevant External Links for TRC-GCA2-1 Gene

GeneLoc Exon Structure for
TRC-GCA2-1
ECgene alternative splicing isoforms for
TRC-GCA2-1

No data available for mRNA/cDNA for TRC-GCA2-1 Gene

Expression for TRC-GCA2-1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for TRC-GCA2-1 Gene

Orthologs for TRC-GCA2-1 Gene

No data available for Orthologs and Evolution for TRC-GCA2-1 Gene

Paralogs for TRC-GCA2-1 Gene

No data available for Paralogs for TRC-GCA2-1 Gene

Variants for TRC-GCA2-1 Gene

Relevant External Links for TRC-GCA2-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRC-GCA2-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRC-GCA2-1 Gene

Disorders for TRC-GCA2-1 Gene

No disorders were found for TRC-GCA2-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRC-GCA2-1 Gene

Publications for TRC-GCA2-1 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan P.P. … Lowe T.M. (Nucleic Acids Res. 2009) 3 64

Products for TRC-GCA2-1 Gene

Sources for TRC-GCA2-1 Gene

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