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Aliases for TRBV6-5 Gene

Aliases for TRBV6-5 Gene

  • T Cell Receptor Beta Variable 6-5 2 3
  • V_segment Translation Product 3
  • TCRBV13S1 3
  • TCRBV6S5 3
  • TRBV65 3

External Ids for TRBV6-5 Gene

Summaries for TRBV6-5 Gene

GeneCards Summary for TRBV6-5 Gene

TRBV6-5 (T Cell Receptor Beta Variable 6-5) is a Protein Coding gene. An important paralog of this gene is TRBV2.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRBV6-5 Gene

Genomics for TRBV6-5 Gene

Genomic Location for TRBV6-5 Gene

Start:
142,450,947 bp from pter
End:
142,451,448 bp from pter
Size:
502 bases
Orientation:
Plus strand

Genomic View for TRBV6-5 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TRBV6-5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRBV6-5 Gene

No data available for Regulatory Elements for TRBV6-5 Gene

Proteins for TRBV6-5 Gene

  • Protein details for TRBV6-5 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A0A6YYR1-A0A0A6YYR1
    Recommended name:
    Protein TRBV6-5
    Protein Accession:
    A0A0A6YYR1
    Secondary Accessions:

    Protein attributes for TRBV6-5 Gene

    Size:
    114 amino acids
    Molecular mass:
    12402 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TRBV6-5 Gene

Proteomics data for TRBV6-5 Gene at MOPED

Post-translational modifications for TRBV6-5 Gene

No Post-translational modifications

Other Protein References for TRBV6-5 Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for TRBV6-5 Gene

Domains for TRBV6-5 Gene

Gene Families for TRBV6-5 Gene

HGNC:
  • TRB :T cell receptors / TRB locus

Protein Domains for TRBV6-5 Gene

genes like me logo Genes that share domains with TRBV6-5: view

No data available for UniProtKB/Swiss-Prot for TRBV6-5 Gene

Function for TRBV6-5 Gene

Gene Ontology (GO) - Molecular Function for TRBV6-5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding --
genes like me logo Genes that share ontologies with TRBV6-5: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for TRBV6-5 Gene

Localization for TRBV6-5 Gene

No data available for Gene Ontology (GO) - Cellular Components for TRBV6-5 Gene

Pathways for TRBV6-5 Gene

SuperPathways for TRBV6-5 Gene

No Data Available

Interacting Proteins for TRBV6-5 Gene

Gene Ontology (GO) - Biological Process for TRBV6-5 Gene

None

No data available for Pathways by source for TRBV6-5 Gene

Transcripts for TRBV6-5 Gene

mRNA/cDNA for TRBV6-5 Gene

(1) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TRBV6-5 Gene

No ASD Table

Relevant External Links for TRBV6-5 Gene

GeneLoc Exon Structure for
TRBV6-5
ECgene alternative splicing isoforms for
TRBV6-5

Expression for TRBV6-5 Gene

mRNA expression in normal human tissues for TRBV6-5 Gene

mRNA differential expression in normal tissues according to GTEx for TRBV6-5 Gene

This gene is overexpressed in Whole Blood (30.7) and Spleen (4.3).
genes like me logo Genes that share expressions with TRBV6-5: view

Orthologs for TRBV6-5 Gene

This gene was present in the common ancestor of chordates.

Orthologs for TRBV6-5 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia -- 37
  • 60 (a)
ManyToMany
-- 37
  • 59 (a)
ManyToMany
-- 37
  • 64 (a)
ManyToMany
-- 37
  • 63 (a)
ManyToMany
-- 37
  • 58 (a)
ManyToMany
-- 37
  • 64 (a)
ManyToMany
-- 37
  • 59 (a)
ManyToMany
-- 37
  • 56 (a)
ManyToMany
-- 37
  • 62 (a)
ManyToMany
-- 37
  • 58 (a)
ManyToMany
-- 37
  • 63 (a)
ManyToMany
-- 37
  • 64 (a)
ManyToMany
-- 37
  • 61 (a)
ManyToMany
-- 37
  • 56 (a)
ManyToMany
TRB@ 37
  • 51 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia -- 37
  • 54 (a)
ManyToMany
-- 37
  • 41 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 37
  • 37 (a)
OneToMany
chicken
(Gallus gallus)
Aves -- 37
  • 29 (a)
ManyToMany
-- 37
  • 36 (a)
ManyToMany
-- 37
  • 30 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia -- 37
  • 25 (a)
ManyToMany
-- 37
  • 34 (a)
ManyToMany
Species with no ortholog for TRBV6-5:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for TRBV6-5 Gene

ENSEMBL:
Gene Tree for TRBV6-5 (if available)
TreeFam:
Gene Tree for TRBV6-5 (if available)

Paralogs for TRBV6-5 Gene

genes like me logo Genes that share paralogs with TRBV6-5: view

Variants for TRBV6-5 Gene

Relevant External Links for TRBV6-5 Gene

HapMap Linkage Disequilibrium report
TRBV6-5

No data available for Sequence variations from dbSNP and Humsavar and Structural Variations from Database of Genomic Variants (DGV) for TRBV6-5 Gene

Disorders for TRBV6-5 Gene

No disorders were found for TRBV6-5 Gene.

No data available for UniProtKB/Swiss-Prot for TRBV6-5 Gene

Publications for TRBV6-5 Gene

  1. The complete 685-kilobase DNA sequence of the human beta T cell receptor locus. (PMID: 8650574) Rowen L. … Hood L. (Science 1996) 2 3
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for TRBV6-5 Gene

Sources for TRBV6-5 Gene

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