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Aliases for TRBV5-1 Gene

Aliases for TRBV5-1 Gene

  • T-Cell Receptor Beta Variable 5-1 2 5
  • T Cell Receptor Beta Variable 5-1 2 3
  • TCRBV5S1A1T 3
  • TCRBV5S1 3
  • TRBV51 3

External Ids for TRBV5-1 Gene

Previous GeneCards Identifiers for TRBV5-1 Gene

  • GC07U990237
  • GC07P141351
  • GC07P141428
  • GC07P141475
  • GC07P141668
  • GC07P142163
  • GC07P142185
  • GC07P142322
  • GC07P142371
  • GC07P142409
  • GC07P142460
  • GC07P142582
  • GC07P142673
  • GC07P142741
  • GC07P142803
  • GC07P142602
  • GC07P142836
  • GC07P142999
  • GC07P143147
  • GC07P143347

Summaries for TRBV5-1 Gene

GeneCards Summary for TRBV5-1 Gene

TRBV5-1 (T-Cell Receptor Beta Variable 5-1) is a Protein Coding gene. An important paralog of this gene is TRBV5-3.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRBV5-1 Gene

Genomics for TRBV5-1 Gene

Regulatory Elements for TRBV5-1 Gene

Enhancers for TRBV5-1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07G142323 1 ENCODE dbSUPER 0.7 +3.2 3158 0.2 CTCF RB1 TEAD4 KLF17 ZIC2 RAD21 HIC1 GLIS2 ZBTB48 PATZ1 TRBV6-1 TRBV5-1
GH07G142321 0.8 ENCODE dbSUPER 0.7 -0.5 -491 0.2 CTCF ZNF316 ZNF3 RAD21 MAFK TRBV4-1 TRBV5-1
GH07G142312 1 Ensembl ENCODE dbSUPER 0.4 -6.9 -6928 2.5 ZNF263 CTCF PRDM10 RAD21 TRBV4-1 TRBV5-1
GH07G142326 0.9 ENCODE dbSUPER 0.4 +6.1 6121 0.5 ZNF362 ATF1 ZBTB21 ATF2 ZSCAN21 JUND ATF3 ZNF629 CREB1 NBN TRBV6-1 TRBV5-1
GH07G142320 0.5 Ensembl dbSUPER 0.7 +0.3 324 0.4 TRBV4-1 TRBV5-1 TRBV6-1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TRBV5-1 on UCSC Golden Path with GeneCards custom track

Genomic Location for TRBV5-1 Gene

142,320,677 bp from pter
142,321,544 bp from pter
868 bases
Plus strand

Genomic View for TRBV5-1 Gene

Genes around TRBV5-1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRBV5-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRBV5-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRBV5-1 Gene

Proteins for TRBV5-1 Gene

  • Protein details for TRBV5-1 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    Recommended name:
    T-cell receptor beta variable 5-1
    Protein Accession:

    Protein attributes for TRBV5-1 Gene

    114 amino acids
    Molecular mass:
    12600 Da
    Quaternary structure:
    No Data Available

    Three dimensional structures from OCA and Proteopedia for TRBV5-1 Gene

neXtProt entry for TRBV5-1 Gene

Post-translational modifications for TRBV5-1 Gene

No Post-translational modifications

Other Protein References for TRBV5-1 Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for TRBV5-1 Gene

Domains & Families for TRBV5-1 Gene

Gene Families for TRBV5-1 Gene

Protein Domains for TRBV5-1 Gene

Suggested Antigen Peptide Sequences for TRBV5-1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRBV5-1: view

No data available for UniProtKB/Swiss-Prot for TRBV5-1 Gene

Function for TRBV5-1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRBV5-1 Gene

Localization for TRBV5-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TRBV5-1 Gene

Pathways & Interactions for TRBV5-1 Gene

SuperPathways for TRBV5-1 Gene

No Data Available

Interacting Proteins for TRBV5-1 Gene

Gene Ontology (GO) - Biological Process for TRBV5-1 Gene


No data available for Pathways by source and SIGNOR curated interactions for TRBV5-1 Gene

Drugs & Compounds for TRBV5-1 Gene

No Compound Related Data Available

Transcripts for TRBV5-1 Gene

mRNA/cDNA for TRBV5-1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TRBV5-1 Gene

No ASD Table

Relevant External Links for TRBV5-1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for TRBV5-1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TRBV5-1 Gene

mRNA differential expression in normal tissues according to GTEx for TRBV5-1 Gene

This gene is overexpressed in Whole Blood (x34.2) and Spleen (x4.6).
genes like me logo Genes that share expression patterns with TRBV5-1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRBV5-1 Gene

Orthologs for TRBV5-1 Gene

This gene was present in the common ancestor of mammals.

Orthologs for TRBV5-1 Gene

Organism Taxonomy Gene Similarity Type Details
(Monodelphis domestica)
Mammalia -- 35
  • 48 (a)
-- 35
  • 47 (a)
(Ornithorhynchus anatinus)
Mammalia -- 35
  • 42 (a)
Species where no ortholog for TRBV5-1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for TRBV5-1 Gene

Gene Tree for TRBV5-1 (if available)
Gene Tree for TRBV5-1 (if available)

Paralogs for TRBV5-1 Gene

Variants for TRBV5-1 Gene

Relevant External Links for TRBV5-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRBV5-1 Gene

Disorders for TRBV5-1 Gene

No disorders were found for TRBV5-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRBV5-1 Gene

Publications for TRBV5-1 Gene

  1. The complete 685-kilobase DNA sequence of the human beta T cell receptor locus. (PMID: 8650574) Rowen L. … Hood L. (Science 1996) 2 3 64

Products for TRBV5-1 Gene

Sources for TRBV5-1 Gene

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