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Aliases for TRBV25OR9-2 Gene

Aliases for TRBV25OR9-2 Gene

  • T Cell Receptor Beta Variable 25/OR9-2 (Pseudogene) 2 3
  • T-Cell Receptor, Beta Variable Region 11, Orphon 2 3
  • TCRBV11O 2 3
  • T-Cell Receptor Beta Variable 25/OR9-2 (Pseudogene) 5
  • TRBV25/OR9-2 3
  • TCRBV11S2O 3
  • TCRBV25S2 3

External Ids for TRBV25OR9-2 Gene

Previous HGNC Symbols for TRBV25OR9-2 Gene

  • TCRBV11O

Previous GeneCards Identifiers for TRBV25OR9-2 Gene

  • GC09U990070
  • GC09P033652
  • GC09P033664
  • GC09P033620
  • GC09P033673

Summaries for TRBV25OR9-2 Gene

GeneCards Summary for TRBV25OR9-2 Gene

TRBV25OR9-2 (T Cell Receptor Beta Variable 25/OR9-2 (Pseudogene)) is a Pseudogene.

Additional gene information for TRBV25OR9-2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRBV25OR9-2 Gene

Genomics for TRBV25OR9-2 Gene

GeneHancer (GH) Regulatory Elements for TRBV25OR9-2 Gene

Promoters and enhancers for TRBV25OR9-2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09I033675 Promoter/Enhancer 1.3 Ensembl ENCODE 0.4 +14.7 14650 1.9 RB1 SIN3A ZNF335 GLIS2 ATF7 ZNF280D YY2 CEBPB ZNF398 REST PTENP1-AS PTENP1 ENSG00000260947 LINC01251 NUDT2 TRBV25OR9-2
GH09I033655 Enhancer 0.2 FANTOM5 0.4 -6.2 -6153 0.1 PRSS3P4 TRBV25OR9-2 TRBV24OR9-2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TRBV25OR9-2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TRBV25OR9-2 Gene

Genomic Locations for TRBV25OR9-2 Gene
chr9:33,662,166-33,662,664
(GRCh38/hg38)
Size:
499 bases
Orientation:
Plus strand
chr9:33,662,164-33,662,662
(GRCh37/hg19)

Genomic View for TRBV25OR9-2 Gene

Genes around TRBV25OR9-2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRBV25OR9-2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRBV25OR9-2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRBV25OR9-2 Gene

Proteins for TRBV25OR9-2 Gene

Post-translational modifications for TRBV25OR9-2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRBV25OR9-2 Gene

Domains & Families for TRBV25OR9-2 Gene

Gene Families for TRBV25OR9-2 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRBV25OR9-2: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRBV25OR9-2 Gene

Function for TRBV25OR9-2 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRBV25OR9-2 Gene

Localization for TRBV25OR9-2 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for TRBV25OR9-2 gene
Compartment Confidence
nucleus 2
cytosol 2
extracellular 1
mitochondrion 1
peroxisome 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRBV25OR9-2 Gene

Pathways & Interactions for TRBV25OR9-2 Gene

SuperPathways for TRBV25OR9-2 Gene

No Data Available

Interacting Proteins for TRBV25OR9-2 Gene

Gene Ontology (GO) - Biological Process for TRBV25OR9-2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRBV25OR9-2 Gene

Drugs & Compounds for TRBV25OR9-2 Gene

No Compound Related Data Available

Transcripts for TRBV25OR9-2 Gene

mRNA/cDNA for TRBV25OR9-2 Gene

(2) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TRBV25OR9-2 Gene

No ASD Table

Relevant External Links for TRBV25OR9-2 Gene

GeneLoc Exon Structure for
TRBV25OR9-2
ECgene alternative splicing isoforms for
TRBV25OR9-2

Expression for TRBV25OR9-2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TRBV25OR9-2 Gene

genes like me logo Genes that share expression patterns with TRBV25OR9-2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRBV25OR9-2 Gene

Orthologs for TRBV25OR9-2 Gene

Evolution for TRBV25OR9-2 Gene

ENSEMBL:
Gene Tree for TRBV25OR9-2 (if available)
TreeFam:
Gene Tree for TRBV25OR9-2 (if available)

No data available for Orthologs for TRBV25OR9-2 Gene

Paralogs for TRBV25OR9-2 Gene

No data available for Paralogs for TRBV25OR9-2 Gene

Variants for TRBV25OR9-2 Gene

Additional Variant Information for TRBV25OR9-2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRBV25OR9-2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRBV25OR9-2 Gene

Disorders for TRBV25OR9-2 Gene

Additional Disease Information for TRBV25OR9-2

No disorders were found for TRBV25OR9-2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TRBV25OR9-2 Gene

Publications for TRBV25OR9-2 Gene

  1. Organization of human T-cell receptor beta-chain genes: clusters of V beta genes are present on chromosomes 7 and 9. (PMID: 8384723) Robinson MA … Concannon P (Proceedings of the National Academy of Sciences of the United States of America 1993) 2 3 58
  2. Conserved and heterogeneous lipid antigen specificities of CD1d-restricted NKT cell receptors. (PMID: 16517731) Brigl M … Gumperz JE (Journal of immunology (Baltimore, Md. : 1950) 2006) 3 58
  3. Common intra-articular T cell expansions in patients with reactive arthritis: identical beta-chain junctional sequences and cytotoxicity toward HLA-B27. (PMID: 10201900) Dulphy N … Toubert A (Journal of immunology (Baltimore, Md. : 1950) 1999) 3 58

Products for TRBV25OR9-2 Gene

Sources for TRBV25OR9-2 Gene

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