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Aliases for TRBV20OR9-2 Gene

Aliases for TRBV20OR9-2 Gene

  • T-Cell Receptor Beta Variable 20/OR9-2 (Non-Functional) 2 5
  • T Cell Receptor Beta Variable 20/OR9-2 (Non-Functional) 2 3
  • T-Cell Receptor, Beta Variable Region 2, Orphon 2 3
  • T Cell Receptor Beta Variable 20/OR9-2 Pseudogene 3
  • T-Cell Receptor Beta Chain Variable Region 3
  • T Cell Receptor Beta Variable 20/OR9-2 2
  • TRBV20/OR9-2 3
  • TCRBV20S2 3
  • TCRBV2S2O 3
  • TCRBV2O 3
  • TCRB 3
  • CDR3 3
  • TCR 3
  • TRB 3

External Ids for TRBV20OR9-2 Gene

Previous HGNC Symbols for TRBV20OR9-2 Gene


Previous GeneCards Identifiers for TRBV20OR9-2 Gene

  • GC09U990072
  • GC09P033607
  • GC09P033618
  • GC09P033621
  • GC09P033704
  • GC09P033742
  • GC09P033779
  • GC09P033818
  • GC09P033705
  • GC09P033875
  • GC09P033908
  • GC09P033948
  • GC09P033984
  • GC09P034020

Summaries for TRBV20OR9-2 Gene

GeneCards Summary for TRBV20OR9-2 Gene

TRBV20OR9-2 (T-Cell Receptor Beta Variable 20/OR9-2 (Non-Functional)) is a Pseudogene. An important paralog of this gene is TRBV20-1.

Additional gene information for TRBV20OR9-2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRBV20OR9-2 Gene

Genomics for TRBV20OR9-2 Gene

Regulatory Elements for TRBV20OR9-2 Gene

Enhancers for TRBV20OR9-2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09H033617 0.8 Ensembl ENCODE 0.7 +0.1 110 0 CTCF PKNOX1 CREB1 RAD21 PIR37945 TRBV20OR9-2
GH09H033613 0.3 FANTOM5 0.7 -3.7 -3744 0 PRSS3 LINC01251 ENSG00000260947 TRBV20OR9-2 PRSS3P4
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TRBV20OR9-2 on UCSC Golden Path with GeneCards custom track

Genomic Location for TRBV20OR9-2 Gene

33,617,762 bp from pter
33,618,508 bp from pter
747 bases
Plus strand

Genomic View for TRBV20OR9-2 Gene

Genes around TRBV20OR9-2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRBV20OR9-2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRBV20OR9-2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRBV20OR9-2 Gene

Proteins for TRBV20OR9-2 Gene

  • Protein details for TRBV20OR9-2 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    Recommended name:
    T-cell receptor beta variable 20/OR9-2 (non-functional)
    Protein Accession:

    Protein attributes for TRBV20OR9-2 Gene

    130 amino acids
    Molecular mass:
    14281 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TRBV20OR9-2 Gene

Post-translational modifications for TRBV20OR9-2 Gene

No Post-translational modifications

Other Protein References for TRBV20OR9-2 Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for TRBV20OR9-2 Gene

Domains & Families for TRBV20OR9-2 Gene

Gene Families for TRBV20OR9-2 Gene

Protein Domains for TRBV20OR9-2 Gene

Suggested Antigen Peptide Sequences for TRBV20OR9-2 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRBV20OR9-2: view

No data available for UniProtKB/Swiss-Prot for TRBV20OR9-2 Gene

Function for TRBV20OR9-2 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for TRBV20OR9-2
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRBV20OR9-2 Gene

Localization for TRBV20OR9-2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRBV20OR9-2 Gene

Pathways & Interactions for TRBV20OR9-2 Gene

SuperPathways for TRBV20OR9-2 Gene

No Data Available

Interacting Proteins for TRBV20OR9-2 Gene

Gene Ontology (GO) - Biological Process for TRBV20OR9-2 Gene


No data available for Pathways by source and SIGNOR curated interactions for TRBV20OR9-2 Gene

Drugs & Compounds for TRBV20OR9-2 Gene

No Compound Related Data Available

Transcripts for TRBV20OR9-2 Gene

mRNA/cDNA for TRBV20OR9-2 Gene

(1) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for TRBV20OR9-2
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for TRBV20OR9-2 Gene

No ASD Table

Relevant External Links for TRBV20OR9-2 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for TRBV20OR9-2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TRBV20OR9-2 Gene

mRNA differential expression in normal tissues according to GTEx for TRBV20OR9-2 Gene

This gene is overexpressed in Brain - Cerebellum (x12.1), Brain - Cerebellar Hemisphere (x11.1), and Pituitary (x7.1).
genes like me logo Genes that share expression patterns with TRBV20OR9-2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRBV20OR9-2 Gene

Orthologs for TRBV20OR9-2 Gene

This gene was present in the common ancestor of mammals.

Orthologs for TRBV20OR9-2 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia TRBV20OR9-2 34
  • 98 (a)
(Bos Taurus)
Mammalia -- 34
  • 71 (a)
-- 34
  • 68 (a)
(Canis familiaris)
Mammalia -- 34
  • 63 (a)
(Monodelphis domestica)
Mammalia -- 34
  • 57 (a)
(Ornithorhynchus anatinus)
Mammalia -- 34
  • 46 (a)
Species where no ortholog for TRBV20OR9-2 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for TRBV20OR9-2 Gene

Gene Tree for TRBV20OR9-2 (if available)
Gene Tree for TRBV20OR9-2 (if available)

Paralogs for TRBV20OR9-2 Gene

Paralogs for TRBV20OR9-2 Gene

genes like me logo Genes that share paralogs with TRBV20OR9-2: view

Variants for TRBV20OR9-2 Gene

Relevant External Links for TRBV20OR9-2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRBV20OR9-2 Gene

Disorders for TRBV20OR9-2 Gene

No disorders were found for TRBV20OR9-2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRBV20OR9-2 Gene

Publications for TRBV20OR9-2 Gene

  1. Organization of human T-cell receptor beta-chain genes: clusters of V beta genes are present on chromosomes 7 and 9. (PMID: 8384723) Robinson MA … Concannon P (Proceedings of the National Academy of Sciences of the United States of America 1993) 2 3 60
  2. Single-cell analysis of glandular T cell receptors in Sjögren's syndrome. (PMID: 27358913) Joachims ML … Farris AD (JCI insight 2016) 3 60
  3. A normal T cell receptor beta CDR3 length distribution in patients with APECED. (PMID: 25880100) Niemi HJ … Tuulasvaara A (Cellular immunology 2015) 3 60
  4. Longitudinal analysis of herpes simplex virus-specific CD4+ cell clonotypes in infected tissues and blood. (PMID: 15897986) Barcy S … Koelle DM (The Journal of infectious diseases 2005) 3 60
  5. Coronary arteries from human cardiac allografts with chronic rejection contain oligoclonal T cells: persistence of identical clonally expanded TCR transcripts from the early post-transplantation period (endomyocardial biopsies) to chronic rejection (coronary arteries). (PMID: 10975868) Slachta CA … Platsoucas CD (Journal of immunology (Baltimore, Md. : 1950) 2000) 3 60

Products for TRBV20OR9-2 Gene

Sources for TRBV20OR9-2 Gene

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