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Aliases for TRBV20OR9-2 Gene

Aliases for TRBV20OR9-2 Gene

  • T Cell Receptor Beta Variable 20/OR9-2 (Non-Functional) 2 3
  • T-Cell Receptor, Beta Variable Region 2, Orphon 2 3
  • TCRBV2O 2 3
  • T-Cell Receptor Beta Variable 20/OR9-2 (Non-Functional) 5
  • T Cell Receptor Beta Variable 20/OR9-2 Pseudogene 3
  • T-Cell Receptor Beta Chain Variable Region 3
  • TRBV20/OR9-2 3
  • TCRBV20S2 3
  • TCRBV2S2O 3
  • TCRB 3
  • CDR3 3
  • TCR 3
  • TRB 3

External Ids for TRBV20OR9-2 Gene

Previous HGNC Symbols for TRBV20OR9-2 Gene

  • TCRBV2O

Previous GeneCards Identifiers for TRBV20OR9-2 Gene

  • GC09U990072
  • GC09P033607
  • GC09P033618
  • GC09P033621
  • GC09P033704
  • GC09P033742
  • GC09P033779
  • GC09P033818
  • GC09P033705
  • GC09P033875
  • GC09P033908
  • GC09P033948
  • GC09P033984
  • GC09P034020
  • GC09P034067

Summaries for TRBV20OR9-2 Gene

GeneCards Summary for TRBV20OR9-2 Gene

TRBV20OR9-2 (T Cell Receptor Beta Variable 20/OR9-2 (Non-Functional)) is a Pseudogene. An important paralog of this gene is TRBV20-1.

Additional gene information for TRBV20OR9-2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRBV20OR9-2 Gene

Genomics for TRBV20OR9-2 Gene

GeneHancer (GH) Regulatory Elements for TRBV20OR9-2 Gene

Promoters and enhancers for TRBV20OR9-2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09I033617 Enhancer 0.7 Ensembl ENCODE 550.8 +0.1 109 0.3 CTCF PKNOX1 CREB1 ZNF444 RAD21 TRBV20OR9-2 PIR37945
GH09I033613 Enhancer 0.2 FANTOM5 0.8 -3.7 -3744 0.2 PRSS3P4 PRSS3 LINC01251 ENSG00000260947 TRBV20OR9-2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TRBV20OR9-2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TRBV20OR9-2 Gene

Genomic Locations for TRBV20OR9-2 Gene
chr9:33,617,762-33,618,508
(GRCh38/hg38)
Size:
747 bases
Orientation:
Plus strand
chr9:33,617,760-33,618,506
(GRCh37/hg19)

Genomic View for TRBV20OR9-2 Gene

Genes around TRBV20OR9-2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRBV20OR9-2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRBV20OR9-2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRBV20OR9-2 Gene

Proteins for TRBV20OR9-2 Gene

  • Protein details for TRBV20OR9-2 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A075B6H5
    Recommended name:
    T-cell receptor beta variable 20/OR9-2 (non-functional)
    Protein Accession:
    A0A075B6H5

    Protein attributes for TRBV20OR9-2 Gene

    Size:
    130 amino acids
    Molecular mass:
    14281 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TRBV20OR9-2 Gene

Post-translational modifications for TRBV20OR9-2 Gene

No Post-translational modifications

Other Protein References for TRBV20OR9-2 Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for TRBV20OR9-2 Gene

Domains & Families for TRBV20OR9-2 Gene

Gene Families for TRBV20OR9-2 Gene

Protein Domains for TRBV20OR9-2 Gene

Suggested Antigen Peptide Sequences for TRBV20OR9-2 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRBV20OR9-2: view

No data available for UniProtKB/Swiss-Prot for TRBV20OR9-2 Gene

Function for TRBV20OR9-2 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRBV20OR9-2 Gene

Localization for TRBV20OR9-2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRBV20OR9-2 Gene

Pathways & Interactions for TRBV20OR9-2 Gene

SuperPathways for TRBV20OR9-2 Gene

No Data Available

Interacting Proteins for TRBV20OR9-2 Gene

Gene Ontology (GO) - Biological Process for TRBV20OR9-2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRBV20OR9-2 Gene

Drugs & Compounds for TRBV20OR9-2 Gene

No Compound Related Data Available

Transcripts for TRBV20OR9-2 Gene

mRNA/cDNA for TRBV20OR9-2 Gene

(1) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRBV20OR9-2 Gene

No ASD Table

Relevant External Links for TRBV20OR9-2 Gene

GeneLoc Exon Structure for
TRBV20OR9-2
ECgene alternative splicing isoforms for
TRBV20OR9-2

Expression for TRBV20OR9-2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TRBV20OR9-2 Gene

mRNA differential expression in normal tissues according to GTEx for TRBV20OR9-2 Gene

This gene is overexpressed in Brain - Cerebellum (x12.1), Brain - Cerebellar Hemisphere (x11.1), and Pituitary (x7.1).
genes like me logo Genes that share expression patterns with TRBV20OR9-2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRBV20OR9-2 Gene

Orthologs for TRBV20OR9-2 Gene

This gene was present in the common ancestor of mammals.

Orthologs for TRBV20OR9-2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TRBV20OR9-2 34
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia -- 34
  • 71 (a)
ManyToMany
-- 34
  • 68 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia -- 34
  • 63 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia -- 34
  • 57 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 34
  • 46 (a)
OneToMany
Species where no ortholog for TRBV20OR9-2 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for TRBV20OR9-2 Gene

ENSEMBL:
Gene Tree for TRBV20OR9-2 (if available)
TreeFam:
Gene Tree for TRBV20OR9-2 (if available)

Paralogs for TRBV20OR9-2 Gene

Paralogs for TRBV20OR9-2 Gene

genes like me logo Genes that share paralogs with TRBV20OR9-2: view

Variants for TRBV20OR9-2 Gene

Additional Variant Information for TRBV20OR9-2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRBV20OR9-2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRBV20OR9-2 Gene

Disorders for TRBV20OR9-2 Gene

No disorders were found for TRBV20OR9-2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRBV20OR9-2 Gene

Publications for TRBV20OR9-2 Gene

  1. Organization of human T-cell receptor beta-chain genes: clusters of V beta genes are present on chromosomes 7 and 9. (PMID: 8384723) Robinson MA … Concannon P (Proceedings of the National Academy of Sciences of the United States of America 1993) 2 3 58
  2. Single-cell analysis of glandular T cell receptors in Sjögren's syndrome. (PMID: 27358913) Joachims ML … Farris AD (JCI insight 2016) 3 58
  3. A normal T cell receptor beta CDR3 length distribution in patients with APECED. (PMID: 25880100) Niemi HJ … Tuulasvaara A (Cellular immunology 2015) 3 58
  4. Longitudinal analysis of herpes simplex virus-specific CD4+ cell clonotypes in infected tissues and blood. (PMID: 15897986) Barcy S … Koelle DM (The Journal of infectious diseases 2005) 3 58
  5. Coronary arteries from human cardiac allografts with chronic rejection contain oligoclonal T cells: persistence of identical clonally expanded TCR transcripts from the early post-transplantation period (endomyocardial biopsies) to chronic rejection (coronary arteries). (PMID: 10975868) Slachta CA … Platsoucas CD (Journal of immunology (Baltimore, Md. : 1950) 2000) 3 58

Products for TRBV20OR9-2 Gene

Sources for TRBV20OR9-2 Gene

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