TRB@ Cluster
gene cluster GIFtS : 34
GCID: GC07 P142700
T cell receptor beta locus (Previous symbol: TCRB )
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Aliasesfor TRB@ gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases T Cell Receptor Beta Locus 1 2 TCRB1 2 5 TRB1 2 T-Cell Antigen Receptor, Beta Polypeptide, T-Cell Receptor, Beta Cluster2 T-Cell Receptor, Beta Cluster2
Export aliases for TRB@ gene to outside databases Previous GC identifers: GC07U990096 GC07M140532 GC07P141602 GC07P141678 GC07P141648 GC07Pg41337 GC07P142320 GC07P142362 GC07P142417 GC07P142470 GC07P142631
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Summariesfor TRB@ gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for TRB@ : T cell receptors recognize foreign antigens which have been processed as small peptides and bound to major histocompatibility complex (MHC) molecules at the surface of antigen presenting cells (APC). Each T cell receptor is a dimer consisting of one alpha and one beta chain or one delta and one gamma chain. In a single cell, the T cell receptor loci are rearranged and expressed in the order delta, gamma, beta, and alpha. If both delta and gamma rearrangements produce functional chains, the cell expresses delta and gamma. If not, the cell proceeds to rearrange the beta and alpha loci. This region represents the germline organization of the T cell receptor beta locus. The beta locus includes V (variable), J (joining), diversity (D), and C (constant) segments. During T cell development, the beta chain is synthesized by a recombination event at the DNA level joining a D segment with a J segment; a V segment is then joined to the D-J gene. The C segment is later joined by splicing at the RNA level. Recombination of many different V segments with several J segments provides a wide range of antigen recognition. Additional diversity is attained by junctional diversity, resulting from the random additional of nucleotides by terminal deoxynucleotidyltransferase. Several V segments and one J segment of the beta locus are known to be incapable of encoding a protein and are considered pseudogenes. The beta locus also includes eight trypsinogen genes, three of which encode functional proteins and five of which are pseudogenes. Chromosomal abnormalities involving the T-cell receptor beta locus have been associated with T-cell lymphomas. (provided by RefSeq, Jul 2008)
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Genomic Viewsfor TRB@ gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section Regulatory elements: Search SABiosciences Regulatory transcription factor binding sites for TRB@ Other transcription factors Search SABiosciences Chromatin IP Primers for TRB@ Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat TRB@
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 7q34 HGNC cytogenetic band: 7q34 TRB@ Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 7 GeneLoc Exon Structure
GeneLoc location for GC07P142700: view genomic region
(about GC identifiers )
Start:
141,998,851 bp from pter
End:
142,510,972 bp from pter
Size:
512,122 bases
Orientation:
plus strand
1 alternative location : Chr 7+,CRA_TCAG 141,337,044-141,912,827
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Proteinsfor TRB@ gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: TVB2_HUMAN, P04435 (See
protein sequence )Recommended Name: T-cell receptor beta chain V region CTL-L17 precursor Size : 133 amino acids; 14999 Da
Miscellaneous : This sequence was derived from a human cytotoxic T-lymphocyte that is T3+, T4+, T8-Explore the universe of human proteins at neXtProt for TRB@: NX_P04435 TRB@ Protein expression data from MOPED and PaxDb : --Reactome Protein details: P04435 Human Recombinant Protein Products:
TRB@ Antibody Products: Assay Products for TRB@:
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Protein
Domains / Familiesfor TRB@ gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
TRB@ for domains About GeneDecksing 4 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry P04435 ProtoNet protein and cluster: P04435
2 Blocks protein families : IPB003599 Immunoglobulin subtype IPB013106 Immunoglobulin V-set
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Functionfor TRB@ gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Animal Models: Mouse knock-outs for TRB@: Tcrb tm1Slek Tcrb tm4Slek Tcrb tm1Mom Tcrb tm2Slek Tcrb tm1Habu Tcrb tm7Slek Tcrb tm3Slek Tcrb tm5Slek 14 MGI mutant phenotypes (inferred from 19 alleles ) (MGI details for Tcrb) :
TRB@ for phenotypes About GeneDecksing
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Pathways & Interactionsfor TRB@ gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Unified GeneCards pathways  - 5/17 super-pathways (see all 17 ) About this table See pathways by source Super-pathway contained gene-specific pathways 1 Immune response_NFAT in immune response 2 Immune response_ICOS pathway in T-helper cell 3 Signal transduction_IP3 signaling 4 Immune response_Function of MEF2 in T lymphocytes 5 G-protein signaling Regulation of RAC1 activity
Pathway sources See GeneCards unified pathways Show all pathways 5/15 EMD Millipore Pathways for TRB@ (see all 15 )5/15 GeneGo (Thomson Reuters) Pathways for TRB@ (see all 15 )2 BioSystems Pathways for TRB@ 5/10
Reactome Pathways for TRB@ (see all 10 )
TRB@ for pathways About GeneDecksing Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for TRB@
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Drugs & Compoundsfor TRB@ gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section
TRB@ for compounds About GeneDecksing Browse Tocris compounds for TRB@ 10/15 Novoseek chemical compound relationships for TRB@ gene (see all 15 ) About this table
Search CenterWatch for drugs/clinical trials and news about TRB@
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Transcriptsfor TRB@ gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section GeneLoc Exon Structure
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Expression for TRB@ gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section Expression evidence for TRB@:none See probesets specificity/sensitivity at GeneAnnot CGAP TAG: -- SABiosciences Custom PCR Arrays for TRB@
Primer Products: Browse OriGene genome-wide validated SYBR primer pairs Browse OriGene validated miRNA SYBR primer pairs Search SABiosciences RT2 qPCR
Primer Assays in human, mouse, rat TRB@ Search QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat TRB@ Search QIAGEN QuantiFast Probe-based Assays in human, mouse, rat TRB@
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Orthologsfor TRB@ gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of human and mouse.
Orthologs for TRB@ gene from 1 species (see representative species ) About this table
Organism
Taxonomic classification
Gene
Description
Human Similarity
Orthology Type
Details
mouse (Mus musculus)
Mammalia
Tcrb5
T cell receptor beta chain
--
 
6 -
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Paralogsfor TRB@ gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section --
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Genomic Variantsfor TRB@ gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 7 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for TRB@ (141998851 - 142248851 bp, first 250kb of TRB@)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for TRB@: -- Human Gene Mutation Database (HGMD) : TRB@ Locus Specific Mutation Databases (LSDB): TRB@ SABiosciences Cancer Mutation PCR Assays
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Disorders
/ Diseasesfor TRB@ gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database , Novoseek ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
TRB@ for disorders About GeneDecksing
OMIM gene information: 186930
OMIM disorders : --20/117 diseases for TRB@ (see all 117 ): About MalaCards pure red-cell aplasia graft versus host disease relapsing-remitting multiple sclerosis b-cell non-hodgkin lymphoma churg-strauss syndrome connective tissue disease non-hodgkin lymphoma mixed connective tissue disease severe combined immunodeficiency lymphomatoid papulosis mycosis fungoides dermatitis herpetiformis large granular lymphocyte leukemia eosinophilic fasciitis anaplastic large cell lymphoma guttate psoriasis pemphigus foliaceus malt lymphoma combined immunodeficiency leukemia/lymphoma 10/92 Novoseek disease relationships for TRB@ gene (see all 92 ) About this table
Disease
-log (P-Val)
Hits
PubMed IDs for Articles with Shared Sentences (# sentences)
lymphoma t-cell
75.5
9
2154349 (2), 18952689 (1), 8100721 (1), 2163138 (1) (see all 8 )
lymphoma t-cell cutaneous
69.7
9
16741518 (2), 1836348 (1), 12682631 (1), 2153627 (1) (see all 8 )
granulomatous slack skin
69.4
1
1316105 (1)
lymphoma t-cell peripheral
65.8
1
16237215 (1)
lymphoma
64.4
15
2207314 (1), 8231259 (1), 8160632 (1), 9723588 (1) (see all 14 )
sezary syndrome
64.4
3
7492785 (1), 1848269 (1), 16741518 (1)
lymphoma large cell
62.9
4
2169708 (1), 1493464 (1), 8396607 (1), 7505507 (1)
lymphoproliferative disorders
62.4
1
1953508 (1)
lymphocytosis
59.9
3
7890378 (1), 9519776 (1), 1695480 (1)
mycosis fungoides
58.1
7
8396607 (1), 2036034 (1), 1731519 (1), 8133398 (1) (see all 6 )
Genetic Association Database (GAD): TRB@ Human Genome Epidemiology (HuGE) Navigator: TRB@ (15 documents) Export disorders for TRB@ gene to outside databases
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Publicationsfor TRB@ gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for TRB@ gene, integrated from 9 sources (see all 386 ): (articles sorted by number of sources associating them with TRB@) Utopia : connect your pdf to the dynamic world of online information
Analysis of the insertion/deletion related polymorphism within T cell antigen receptor beta variable genes in primary Sjogren's syndrome. (PubMed id 15708895) 1 , 4, 9 Lawson C.A....Boylston A.W. (2005) Helicobacter pylori infection: CagA-specific antibodies are associated with clinical outcome, but not with HLA-class II polymorphisms of the host. (PubMed id 12635936) 1 , 4 Kunstmann E....Epplen J.T. (2003) Analysis of two T-cell receptor BV gene segment polymorphisms in caucasoid Brazilian patients with rheumatoid arthritis. (PubMed id 14687707) 1 , 4 Dresch C....Chies J.A. (2003) T-cell receptor polymorphism in primary biliary cirrhosis. (PubMed id 14621425) 1 , 4 Selmi C....Podda M. (2003) Malaria is not responsible for the selection of TCR beta-subunit variable gene haplotypes in The Gambia. (PubMed id 11862389) 1 , 4 Donaldson I.J....Boylston A.W. (2002) Unique TCR beta-subunit variable gene haplotypes in Africans. (PubMed id 11862388) 1 , 4 Donaldson I.J....Boylston A.W. (2002) TCRBV3S1 and TCRBV18 gene segment polymorphisms in Brazilian Caucasoid and Black populations. (PubMed id 11841483) 1 , 4 Dresch C....Chies J.A. (2002) Association study of proposed candidate genes/regions in a population of Spanish asthmatics. (PubMed id 11142503) 1 , 4 Soriano J.B....Lazaro C. (2000) The complete primary structure of the T-cell receptor genes from an alloreactive cytotoxic human T-lymphocyte clone. (PubMed id 2426193) 1 , 2 Leiden J.M.... Strominger J.L. (1986) Location of gene for beta subunit of human T-cell receptor at band 7q35, a region prone to rearrangements in T cells. (PubMed id 3983641) 1 , 3 Isobe M....Croce C.M. (1985)
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External Searches for TRB@ gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing TRB@ gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing TRB@ gene
(According to HUGE )
About This Section --
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Specialized Databases showing TRB@ gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for TRB@ Pharmacogenomics, SNPs, Pathways ATLAS Chromosomes in Cancer entry for TRB@ Genetics and Cytogenetics in Oncology and Haematology IMGT entry for TRB@ The international I mM unoG eneT ics information system® specializing in Immunoglobulins (IG), T cell receptors (TR), Major Histocompatibility Complex (MHC) and related proteins of the immune system (RPI) of human and other vertebrate species.
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About This Section Patent Information for TRB@ gene: Search GeneIP for patents involving TRB@ GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor TRB@ gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat TRB@ Search QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing TRB@ QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat TRB@ Search QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat TRB@ Search QIAGEN QuantiFast Probe-based Assays in human, mouse, rat TRB@ Search QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat TRB@
Search Tocris compounds for TRB@
ThermoFisher Antibody for TRB@
Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat TRB@
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Expression for TRB@
Function for TRB@
Genomic Views for TRB@
Intellectual Property for TRB@
Orthologs for TRB@
Paralogs for TRB@
Pathways / Interactions for TRB@
Products for TRB@
Proteins for TRB@
Publications for TRB@
Search Box for TRB@
Summaries for TRB@
Transcripts for TRB@
Variants for TRB@
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