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Aliases for TRAV8-5 Gene

Aliases for TRAV8-5 Gene

  • T-Cell Receptor Alpha Variable 8-5 (Pseudogene) 2 5
  • T Cell Receptor Alpha Variable 8-5 (Pseudogene) 2 3
  • T Cell Receptor Alpha Variable 8-5 Pseudogene 2
  • T Cell Receptor Alpha Variable 8-5 2
  • TCRAV8S5 3
  • TRAV85 3

External Ids for TRAV8-5 Gene

Previous GeneCards Identifiers for TRAV8-5 Gene

  • GC14U990318
  • GC14P020361
  • GC14P021441
  • GC14P022371
  • GC14P002489

Summaries for TRAV8-5 Gene

Entrez Gene Summary for TRAV8-5 Gene

  • T cell receptors recognize foreign antigens which have been processed as small peptides and bound to major histocompatibility complex (MHC) molecules at the surface of antigen presenting cells (APC). Each T cell receptor is a dimer consisting of one alpha and one beta chain or one delta and one gamma chain. In a single cell, the T cell receptor loci are rearranged and expressed in the order delta, gamma, beta, and alpha. If both delta and gamma rearrangements produce functional chains, the cell expresses delta and gamma. If not, the cell proceeds to rearrange the beta and alpha loci. This region represents the germline organization of the T cell receptor alpha and delta loci. Both the alpha and delta loci include V (variable), J (joining), and C (constant) segments and the delta locus also includes diversity (D) segments. The delta locus is situated within the alpha locus, between the alpha V and J segments. During T cell development, the delta chain is synthesized by a recombination event at the DNA level joining a D segment with a J segment; a V segment is then joined to the D-J gene. The alpha chain is synthesized by recombination joining a single V segment with a J segment. For both chains, the C segment is later joined by splicing at the RNA level. Recombination of many different V segments with several J segments provides a wide range of antigen recognition. Additional diversity is attained by junctional diversity, resulting from the random additional of nucleotides by terminal deoxynucleotidyltransferase. Five variable segments can be used in either alpha or delta chains and are described by TRAV/DV symbols. Several V and J segments of the alpha locus are known to be incapable of encoding a protein and are considered pseudogenes. [provided by RefSeq, Aug 2016]

GeneCards Summary for TRAV8-5 Gene

TRAV8-5 (T-Cell Receptor Alpha Variable 8-5 (Pseudogene)) is a Pseudogene.

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRAV8-5 Gene

Genomics for TRAV8-5 Gene

Regulatory Elements for TRAV8-5 Gene

Enhancers for TRAV8-5 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH14G021887 0.8 ENCODE 29.4 -15.1 -15106 1.2 PKNOX1 FOXA2 ZSCAN4 FEZF1 RAD21 ZNF302 GATA2 FOS EGR2 ZNF263 TRAV8-5 SUPT16H METTL3 LINC00641 MMP14 CHD8 TRAV12-2 TRAV8-4
GH14G021902 0.4 Ensembl 39.7 -0.1 -77 0.4 CTCF TRAV8-5 TRAV8-4
GH14G021903 0.4 ENCODE 39.7 -0.4 -362 0.2 CTCF TRAV8-5 TRAV8-4
GH14G022472 2.1 FANTOM5 Ensembl ENCODE dbSUPER 5.2 +585.5 585471 32.0 CREB3L1 AGO1 ZFP64 DMAP1 YBX1 YY1 SLC30A9 ZNF143 ZNF263 SP3 METTL3 BCL2L2-PABPN1 ABHD4 MMP14 SLC7A7 MRPL52 OR6J1 TRAV18 TRAV8-5 REM2
GH14G021263 1.6 Ensembl ENCODE dbSUPER 5.6 -636.0 -636023 7.6 HDGF PKNOX1 FOXA2 MLX CREB3L1 ARNT WRNIP1 ARID4B SIN3A DMAP1 SUPT16H METTL3 CHD8 ENSG00000258515 TMEM55B RAB2B APEX1 TRAV8-5 TOX4 HNRNPC
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TRAV8-5 on UCSC Golden Path with GeneCards custom track

Genomic Location for TRAV8-5 Gene

Chromosome:
14
Start:
21,903,077 bp from pter
End:
21,904,598 bp from pter
Size:
1,522 bases
Orientation:
Plus strand

Genomic View for TRAV8-5 Gene

Genes around TRAV8-5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRAV8-5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRAV8-5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRAV8-5 Gene

Proteins for TRAV8-5 Gene

Post-translational modifications for TRAV8-5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRAV8-5 Gene

Domains & Families for TRAV8-5 Gene

Gene Families for TRAV8-5 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRAV8-5: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRAV8-5 Gene

Function for TRAV8-5 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRAV8-5 Gene

Localization for TRAV8-5 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TRAV8-5 Gene

Pathways & Interactions for TRAV8-5 Gene

SuperPathways for TRAV8-5 Gene

No Data Available

Interacting Proteins for TRAV8-5 Gene

Gene Ontology (GO) - Biological Process for TRAV8-5 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRAV8-5 Gene

Transcripts for TRAV8-5 Gene

mRNA/cDNA for TRAV8-5 Gene

(1) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TRAV8-5 Gene

No ASD Table

Relevant External Links for TRAV8-5 Gene

GeneLoc Exon Structure for
TRAV8-5
ECgene alternative splicing isoforms for
TRAV8-5

Expression for TRAV8-5 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TRAV8-5 Gene

mRNA differential expression in normal tissues according to GTEx for TRAV8-5 Gene

This gene is overexpressed in Nerve - Tibial (x11.0), Brain - Spinal cord (cervical c-1) (x7.8), Whole Blood (x5.4), and Colon - Sigmoid (x5.2).
genes like me logo Genes that share expression patterns with TRAV8-5: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRAV8-5 Gene

Orthologs for TRAV8-5 Gene

Evolution for TRAV8-5 Gene

ENSEMBL:
Gene Tree for TRAV8-5 (if available)
TreeFam:
Gene Tree for TRAV8-5 (if available)

No data available for Orthologs for TRAV8-5 Gene

Paralogs for TRAV8-5 Gene

No data available for Paralogs for TRAV8-5 Gene

Variants for TRAV8-5 Gene

Relevant External Links for TRAV8-5 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRAV8-5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRAV8-5 Gene

Disorders for TRAV8-5 Gene

Relevant External Links for TRAV8-5

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TRAV8-5

No disorders were found for TRAV8-5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TRAV8-5 Gene

Publications for TRAV8-5 Gene

  1. The human T-cell receptor TCRAC/TCRDC (C alpha/C delta) region: organization, sequence, and evolution of 97.6 kb of DNA. (PMID: 8188290) Koop B.F. … Hood L. (Genomics 1994) 2 3 64
  2. Comprehensive analysis of the functional TCR repertoire at the single-cell level. (PMID: 18191637) Ozawa T. … Muraguchi A. (Biochem. Biophys. Res. Commun. 2008) 3 64

Products for TRAV8-5 Gene

Sources for TRAV8-5 Gene

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