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Aliases for TRAV5 Gene

Aliases for TRAV5 Gene

  • T Cell Receptor Alpha Variable 5 2 3 5
  • TCRAV15S1 3
  • TCRAV5S1 3

External Ids for TRAV5 Gene

Previous GeneCards Identifiers for TRAV5 Gene

  • GC14U990324
  • GC14P020207
  • GC14P021287
  • GC14P022219
  • GC14P022220
  • GC14P022222
  • GC14P022224
  • GC14P022226

Summaries for TRAV5 Gene

GeneCards Summary for TRAV5 Gene

TRAV5 (T Cell Receptor Alpha Variable 5) is a Protein Coding gene. An important paralog of this gene is TRAV30.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRAV5 Gene

Genomics for TRAV5 Gene

Regulatory Elements for TRAV5 Gene

Enhancers for TRAV5 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around TRAV5 on UCSC Golden Path with GeneCards custom track

Promoters for TRAV5 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around TRAV5 on UCSC Golden Path with GeneCards custom track

Genomic Location for TRAV5 Gene

Chromosome:
14
Start:
21,749,178 bp from pter
End:
21,749,705 bp from pter
Size:
528 bases
Orientation:
Plus strand

Genomic View for TRAV5 Gene

Genes around TRAV5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRAV5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRAV5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRAV5 Gene

Proteins for TRAV5 Gene

  • Protein details for TRAV5 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A0B4J249
    Recommended name:
    Protein TRAV5
    Protein Accession:
    A0A0B4J249

    Protein attributes for TRAV5 Gene

    Size:
    113 amino acids
    Molecular mass:
    12968 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TRAV5 Gene

Proteomics data for TRAV5 Gene at MOPED

Post-translational modifications for TRAV5 Gene

No Post-translational modifications

Other Protein References for TRAV5 Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for TRAV5 Gene

Domains & Families for TRAV5 Gene

Gene Families for TRAV5 Gene

Protein Domains for TRAV5 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRAV5: view

No data available for Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRAV5 Gene

Function for TRAV5 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRAV5 Gene

Localization for TRAV5 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TRAV5 Gene

Pathways & Interactions for TRAV5 Gene

SuperPathways for TRAV5 Gene

No Data Available

Interacting Proteins for TRAV5 Gene

Gene Ontology (GO) - Biological Process for TRAV5 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRAV5 Gene

Drugs & Compounds for TRAV5 Gene

No Compound Related Data Available

Transcripts for TRAV5 Gene

mRNA/cDNA for TRAV5 Gene

(6) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TRAV5 Gene

No ASD Table

Relevant External Links for TRAV5 Gene

GeneLoc Exon Structure for
TRAV5
ECgene alternative splicing isoforms for
TRAV5

Expression for TRAV5 Gene

mRNA expression in normal human tissues for TRAV5 Gene

mRNA differential expression in normal tissues according to GTEx for TRAV5 Gene

This gene is overexpressed in Whole Blood (x32.3) and Spleen (x5.3).
genes like me logo Genes that share expression patterns with TRAV5: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for TRAV5 Gene

Orthologs for TRAV5 Gene

This gene was present in the common ancestor of mammals.

Orthologs for TRAV5 Gene

Organism Taxonomy Gene Similarity Type Details
oppossum
(Monodelphis domestica)
Mammalia -- 36
  • 38 (a)
ManyToMany
-- 36
  • 41 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Trav3-3 36
  • 62 (a)
OneToMany
Trav3-4 36
  • 68 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 36 (a)
OneToMany
Species with no ortholog for TRAV5:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for TRAV5 Gene

ENSEMBL:
Gene Tree for TRAV5 (if available)
TreeFam:
Gene Tree for TRAV5 (if available)

Paralogs for TRAV5 Gene

genes like me logo Genes that share paralogs with TRAV5: view

Variants for TRAV5 Gene

Relevant External Links for TRAV5 Gene

HapMap Linkage Disequilibrium report
TRAV5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRAV5 Gene

Disorders for TRAV5 Gene

No disorders were found for TRAV5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRAV5 Gene

Publications for TRAV5 Gene

  1. The human T-cell receptor TCRAC/TCRDC (C alpha/C delta) region: organization, sequence, and evolution of 97.6 kb of DNA. (PMID: 8188290) Koop B.F. … Hood L. (Genomics 1994) 2 3 67

Products for TRAV5 Gene

Sources for TRAV5 Gene

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