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Aliases for TRAV40 Gene

Aliases for TRAV40 Gene

  • T Cell Receptor Alpha Variable 40 2 3
  • TCRAV31S1 3
  • TCRAV40S1 3

External Ids for TRAV40 Gene

Summaries for TRAV40 Gene

GeneCards Summary for TRAV40 Gene

TRAV40 (T Cell Receptor Alpha Variable 40) is a Protein Coding gene. An important paralog of this gene is TRAV8-7.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRAV40 Gene

Genomics for TRAV40 Gene

Genomic Location for TRAV40 Gene

Start:
22,314,490 bp from pter
End:
22,314,919 bp from pter
Size:
430 bases
Orientation:
Plus strand

Genomic View for TRAV40 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TRAV40 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRAV40 Gene

No data available for Regulatory Elements for TRAV40 Gene

Proteins for TRAV40 Gene

  • Protein details for TRAV40 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A0B4J280-A0A0B4J280
    Recommended name:
    Protein TRAV40
    Protein Accession:
    A0A0B4J280
    Secondary Accessions:

    Protein attributes for TRAV40 Gene

    Size:
    105 amino acids
    Molecular mass:
    11556 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TRAV40 Gene

Proteomics data for TRAV40 Gene at MOPED

Post-translational modifications for TRAV40 Gene

No Post-translational modifications

Other Protein References for TRAV40 Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for TRAV40 Gene

Domains for TRAV40 Gene

Gene Families for TRAV40 Gene

HGNC:
  • TRAS :T cell receptors / TRA locus

Protein Domains for TRAV40 Gene

genes like me logo Genes that share domains with TRAV40: view

No data available for UniProtKB/Swiss-Prot for TRAV40 Gene

Function for TRAV40 Gene

Gene Ontology (GO) - Molecular Function for TRAV40 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding --
genes like me logo Genes that share ontologies with TRAV40: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for TRAV40 Gene

Localization for TRAV40 Gene

No data available for Gene Ontology (GO) - Cellular Components for TRAV40 Gene

Pathways for TRAV40 Gene

SuperPathways for TRAV40 Gene

No Data Available

Interacting Proteins for TRAV40 Gene

Gene Ontology (GO) - Biological Process for TRAV40 Gene

None

No data available for Pathways by source for TRAV40 Gene

Transcripts for TRAV40 Gene

mRNA/cDNA for TRAV40 Gene

(1) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TRAV40 Gene

No ASD Table

Relevant External Links for TRAV40 Gene

GeneLoc Exon Structure for
TRAV40
ECgene alternative splicing isoforms for
TRAV40

Expression for TRAV40 Gene

mRNA expression in normal human tissues for TRAV40 Gene

genes like me logo Genes that share expressions with TRAV40: view

Orthologs for TRAV40 Gene

This gene was present in the common ancestor of chordates.

Orthologs for TRAV40 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia -- 37
  • 30 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Trav12-3 37
  • 32 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia -- 37
  • 45 (a)
ManyToMany
-- 37
  • 44 (a)
ManyToMany
-- 37
  • 39 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 37
  • 31 (a)
ManyToMany
-- 37
  • 24 (a)
ManyToMany
-- 37
  • 25 (a)
ManyToMany
-- 37
  • 34 (a)
ManyToMany
-- 37
  • 32 (a)
ManyToMany
-- 37
  • 40 (a)
ManyToMany
-- 37
  • 37 (a)
ManyToMany
-- 37
  • 33 (a)
ManyToMany
-- 37
  • 21 (a)
ManyToMany
-- 37
  • 30 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia -- 37
  • 27 (a)
ManyToMany
-- 37
  • 28 (a)
ManyToMany
-- 37
  • 20 (a)
ManyToMany
-- 37
  • 29 (a)
ManyToMany
Species with no ortholog for TRAV40:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for TRAV40 Gene

ENSEMBL:
Gene Tree for TRAV40 (if available)
TreeFam:
Gene Tree for TRAV40 (if available)

Paralogs for TRAV40 Gene

genes like me logo Genes that share paralogs with TRAV40: view

Variants for TRAV40 Gene

Relevant External Links for TRAV40 Gene

HapMap Linkage Disequilibrium report
TRAV40

No data available for Sequence variations from dbSNP and Humsavar and Structural Variations from Database of Genomic Variants (DGV) for TRAV40 Gene

Disorders for TRAV40 Gene

Relevant External Links for TRAV40

Human Genome Epidemiology (HuGE) Navigator
TRAV40
genes like me logo Genes that share disorders with TRAV40: view

No data available for UniProtKB/Swiss-Prot for TRAV40 Gene

Publications for TRAV40 Gene

  1. Molecular analysis of T-cell receptor transcripts in a human T-cell leukemia bearing a t(1;14) and an inv(7); cell surface expression of a TCR-beta chain in the absence of alpha chain. (PMID: 8412327) Bernard O. … Azogui O. (Leukemia 1993) 2 3
  2. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PMID: 23251661) Comuzzie A.G. … Butte N.F. (PLoS ONE 2012) 3

Products for TRAV40 Gene

Sources for TRAV40 Gene

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