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Aliases for TRAV39 Gene

Aliases for TRAV39 Gene

  • T Cell Receptor Alpha Variable 39 2 3
  • TCRAV27S1 3
  • TCRAV39S1 3

External Ids for TRAV39 Gene

Previous GeneCards Identifiers for TRAV39 Gene

  • GC14U990279
  • GC14P020762
  • GC14P021841
  • GC14P022773
  • GC14P022809
  • GC14P022860

Summaries for TRAV39 Gene

GeneCards Summary for TRAV39 Gene

TRAV39 (T Cell Receptor Alpha Variable 39) is a Protein Coding gene. An important paralog of this gene is TRAV30.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRAV39 Gene

Genomics for TRAV39 Gene

Genomic Location for TRAV39 Gene

Start:
22,304,054 bp from pter
End:
22,304,553 bp from pter
Size:
500 bases
Orientation:
Plus strand

Genomic View for TRAV39 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TRAV39 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRAV39 Gene

No data available for Regulatory Elements for TRAV39 Gene

Proteins for TRAV39 Gene

  • Protein details for TRAV39 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A0B4J263
    Recommended name:
    Protein TRAV39
    Protein Accession:
    A0A0B4J263
    Secondary Accessions:

    Protein attributes for TRAV39 Gene

    Size:
    110 amino acids
    Molecular mass:
    12540 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TRAV39 Gene

Proteomics data for TRAV39 Gene at MOPED

Post-translational modifications for TRAV39 Gene

No Post-translational modifications

Other Protein References for TRAV39 Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for TRAV39 Gene

Domains for TRAV39 Gene

Gene Families for TRAV39 Gene

HGNC:
  • TRAS :T cell receptors / TRA locus

Protein Domains for TRAV39 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRAV39: view

No data available for Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRAV39 Gene

Function for TRAV39 Gene

Gene Ontology (GO) - Molecular Function for TRAV39 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding --
genes like me logo Genes that share ontologies with TRAV39: view

miRNA for TRAV39 Gene

miRTarBase miRNAs that target TRAV39

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for TRAV39 Gene

Localization for TRAV39 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TRAV39 Gene

Pathways for TRAV39 Gene

SuperPathways for TRAV39 Gene

No Data Available

Interacting Proteins for TRAV39 Gene

Gene Ontology (GO) - Biological Process for TRAV39 Gene

None

No data available for Pathways by source for TRAV39 Gene

Transcripts for TRAV39 Gene

mRNA/cDNA for TRAV39 Gene

(1) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TRAV39 Gene

No ASD Table

Relevant External Links for TRAV39 Gene

GeneLoc Exon Structure for
TRAV39
ECgene alternative splicing isoforms for
TRAV39

Expression for TRAV39 Gene

mRNA expression in normal human tissues for TRAV39 Gene

mRNA differential expression in normal tissues according to GTEx for TRAV39 Gene

This gene is overexpressed in Artery - Coronary (15.5), Artery - Tibial (10.4), and Whole Blood (7.9).
genes like me logo Genes that share expressions with TRAV39: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for TRAV39 Gene

Orthologs for TRAV39 Gene

This gene was present in the common ancestor of mammals.

Orthologs for TRAV39 Gene

Organism Taxonomy Gene Similarity Type Details
oppossum
(Monodelphis domestica)
Mammalia TRAV39 36
  • 47 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia TRAV39 36
  • 45 (a)
OneToOne
Species with no ortholog for TRAV39:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for TRAV39 Gene

ENSEMBL:
Gene Tree for TRAV39 (if available)
TreeFam:
Gene Tree for TRAV39 (if available)

Paralogs for TRAV39 Gene

genes like me logo Genes that share paralogs with TRAV39: view

Variants for TRAV39 Gene

Relevant External Links for TRAV39 Gene

HapMap Linkage Disequilibrium report
TRAV39

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar and Structural Variations from Database of Genomic Variants (DGV) for TRAV39 Gene

Disorders for TRAV39 Gene

Relevant External Links for TRAV39

Human Genome Epidemiology (HuGE) Navigator
TRAV39
genes like me logo Genes that share disorders with TRAV39: view

No data available for UniProtKB/Swiss-Prot for TRAV39 Gene

Publications for TRAV39 Gene

  1. The human T-cell receptor TCRAC/TCRDC (C alpha/C delta) region: organization, sequence, and evolution of 97.6 kb of DNA. (PMID: 8188290) Koop B.F. … Hood L. (Genomics 1994) 2 3

Products for TRAV39 Gene

Sources for TRAV39 Gene

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