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Aliases for TRAV20 Gene

Aliases for TRAV20 Gene

  • T Cell Receptor Alpha Variable 20 2 3
  • TCRAV20S1 3
  • TCRAV30S1 3

External Ids for TRAV20 Gene

Previous GeneCards Identifiers for TRAV20 Gene

  • GC14U990300
  • GC14P020499
  • GC14P021578
  • GC14P022509
  • GC14P022524
  • GC14P022589
  • GC14P022715
  • GC14P022823

Summaries for TRAV20 Gene

GeneCards Summary for TRAV20 Gene

TRAV20 (T Cell Receptor Alpha Variable 20) is a Protein Coding gene. An important paralog of this gene is TRAV30.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRAV20 Gene

Genomics for TRAV20 Gene

Genomic Location for TRAV20 Gene

Start:
22,040,594 bp from pter
End:
22,041,153 bp from pter
Size:
560 bases
Orientation:
Plus strand

Genomic View for TRAV20 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TRAV20 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRAV20 Gene

No data available for Regulatory Elements for TRAV20 Gene

Proteins for TRAV20 Gene

  • Protein details for TRAV20 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A0B4J274
    Recommended name:
    Protein TRAV20
    Protein Accession:
    A0A0B4J274
    Secondary Accessions:

    Protein attributes for TRAV20 Gene

    Size:
    112 amino acids
    Molecular mass:
    12682 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TRAV20 Gene

Proteomics data for TRAV20 Gene at MOPED

Post-translational modifications for TRAV20 Gene

No Post-translational modifications

Other Protein References for TRAV20 Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for TRAV20 Gene

Domains for TRAV20 Gene

Gene Families for TRAV20 Gene

HGNC:
  • TRAS :T cell receptors / TRA locus

Protein Domains for TRAV20 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRAV20: view

No data available for Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRAV20 Gene

Function for TRAV20 Gene

Gene Ontology (GO) - Molecular Function for TRAV20 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding --
genes like me logo Genes that share ontologies with TRAV20: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for TRAV20 Gene

Localization for TRAV20 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TRAV20 Gene

Pathways for TRAV20 Gene

SuperPathways for TRAV20 Gene

No Data Available

Interacting Proteins for TRAV20 Gene

Gene Ontology (GO) - Biological Process for TRAV20 Gene

None

No data available for Pathways by source for TRAV20 Gene

Transcripts for TRAV20 Gene

mRNA/cDNA for TRAV20 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for TRAV20 Gene

No ASD Table

Relevant External Links for TRAV20 Gene

GeneLoc Exon Structure for
TRAV20
ECgene alternative splicing isoforms for
TRAV20

Expression for TRAV20 Gene

mRNA expression in normal human tissues for TRAV20 Gene

mRNA differential expression in normal tissues according to GTEx for TRAV20 Gene

This gene is overexpressed in Whole Blood (29.8), Spleen (5.6), and Small Intestine - Terminal Ileum (4.7).
genes like me logo Genes that share expressions with TRAV20: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for TRAV20 Gene

Orthologs for TRAV20 Gene

This gene was present in the common ancestor of mammals.

Orthologs for TRAV20 Gene

Organism Taxonomy Gene Similarity Type Details
oppossum
(Monodelphis domestica)
Mammalia -- 36
  • 42 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 49 (a)
ManyToMany
-- 36
  • 53 (a)
ManyToMany
-- 36
  • 53 (a)
ManyToMany
-- 36
  • 55 (a)
ManyToMany
-- 36
  • 46 (a)
ManyToMany
-- 36
  • 52 (a)
ManyToMany
-- 36
  • 50 (a)
ManyToMany
-- 36
  • 49 (a)
ManyToMany
-- 36
  • 51 (a)
ManyToMany
Species with no ortholog for TRAV20:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for TRAV20 Gene

ENSEMBL:
Gene Tree for TRAV20 (if available)
TreeFam:
Gene Tree for TRAV20 (if available)

Paralogs for TRAV20 Gene

genes like me logo Genes that share paralogs with TRAV20: view

Variants for TRAV20 Gene

Relevant External Links for TRAV20 Gene

HapMap Linkage Disequilibrium report
TRAV20

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar and Structural Variations from Database of Genomic Variants (DGV) for TRAV20 Gene

Disorders for TRAV20 Gene

No disorders were found for TRAV20 Gene.

No data available for UniProtKB/Swiss-Prot for TRAV20 Gene

Publications for TRAV20 Gene

  1. The human T-cell receptor TCRAC/TCRDC (C alpha/C delta) region: organization, sequence, and evolution of 97.6 kb of DNA. (PMID: 8188290) Koop B.F. … Hood L. (Genomics 1994) 2 3
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  3. A genome-wide association study of recipient genotype and medium-term kidney allograft function. (PMID: 23432519) O'Brien R.P. … Conlon P.J. (Clin Transplant 2013) 3

Products for TRAV20 Gene

Sources for TRAV20 Gene

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