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Aliases for TRAV16 Gene

Aliases for TRAV16 Gene

  • T Cell Receptor Alpha Variable 16 2 3
  • TCRAV16S1 3
  • TCRAV9S1 3

External Ids for TRAV16 Gene

Summaries for TRAV16 Gene

GeneCards Summary for TRAV16 Gene

TRAV16 (T Cell Receptor Alpha Variable 16) is a Protein Coding gene. An important paralog of this gene is TRAV8-7.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRAV16 Gene

Genomics for TRAV16 Gene

Genomic Location for TRAV16 Gene

Start:
21,990,496 bp from pter
End:
21,990,938 bp from pter
Size:
443 bases
Orientation:
Plus strand

Genomic View for TRAV16 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TRAV16 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRAV16 Gene

No data available for Regulatory Elements for TRAV16 Gene

Proteins for TRAV16 Gene

  • Protein details for TRAV16 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A0A6YYK6-A0A0A6YYK6
    Recommended name:
    Protein TRAV16
    Protein Accession:
    A0A0A6YYK6
    Secondary Accessions:

    Protein attributes for TRAV16 Gene

    Size:
    109 amino acids
    Molecular mass:
    12578 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TRAV16 Gene

Proteomics data for TRAV16 Gene at MOPED

Post-translational modifications for TRAV16 Gene

No Post-translational modifications

Other Protein References for TRAV16 Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for TRAV16 Gene

Domains for TRAV16 Gene

Gene Families for TRAV16 Gene

HGNC:
  • TRAS :T cell receptors / TRA locus

Protein Domains for TRAV16 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRAV16: view

No data available for Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRAV16 Gene

Function for TRAV16 Gene

Gene Ontology (GO) - Molecular Function for TRAV16 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding --
genes like me logo Genes that share ontologies with TRAV16: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for TRAV16 Gene

Localization for TRAV16 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TRAV16 Gene

Pathways for TRAV16 Gene

SuperPathways for TRAV16 Gene

No Data Available

Interacting Proteins for TRAV16 Gene

Gene Ontology (GO) - Biological Process for TRAV16 Gene

None

No data available for Pathways by source for TRAV16 Gene

Transcripts for TRAV16 Gene

mRNA/cDNA for TRAV16 Gene

(1) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TRAV16 Gene

No ASD Table

Relevant External Links for TRAV16 Gene

GeneLoc Exon Structure for
TRAV16
ECgene alternative splicing isoforms for
TRAV16

Expression for TRAV16 Gene

mRNA expression in normal human tissues for TRAV16 Gene

mRNA differential expression in normal tissues according to GTEx for TRAV16 Gene

This gene is overexpressed in Whole Blood (26.4), Spleen (4.7), and Small Intestine - Terminal Ileum (4.4).
genes like me logo Genes that share expressions with TRAV16: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for TRAV16 Gene

Orthologs for TRAV16 Gene

This gene was present in the common ancestor of chordates.

Orthologs for TRAV16 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia TRAV16 36
  • 65 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Trav12d-1 36
  • 44 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia -- 36
  • 61 (a)
OneToMany
-- 36
  • 63 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 30 (a)
ManyToMany
-- 36
  • 34 (a)
ManyToMany
-- 36
  • 25 (a)
ManyToMany
-- 36
  • 34 (a)
ManyToMany
Species with no ortholog for TRAV16:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for TRAV16 Gene

ENSEMBL:
Gene Tree for TRAV16 (if available)
TreeFam:
Gene Tree for TRAV16 (if available)

Paralogs for TRAV16 Gene

genes like me logo Genes that share paralogs with TRAV16: view

Variants for TRAV16 Gene

Relevant External Links for TRAV16 Gene

HapMap Linkage Disequilibrium report
TRAV16

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar and Structural Variations from Database of Genomic Variants (DGV) for TRAV16 Gene

Disorders for TRAV16 Gene

No disorders were found for TRAV16 Gene.

No data available for UniProtKB/Swiss-Prot for TRAV16 Gene

Publications for TRAV16 Gene

  1. The human T-cell receptor TCRAC/TCRDC (C alpha/C delta) region: organization, sequence, and evolution of 97.6 kb of DNA. (PMID: 8188290) Koop B.F. … Hood L. (Genomics 1994) 2 3

Products for TRAV16 Gene

Sources for TRAV16 Gene

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