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TRAV16 Gene(Protein Coding)

T Cell Receptor Alpha Variable 16

GCID:
GC14P021991
GIFtS:
16
Genes Participants
UDN Logo

Aliases for TRAV16 Gene

Aliases for TRAV16 Gene

  • T Cell Receptor Alpha Variable 16 2 3 5
  • TCRAV16S1 3
  • TCRAV9S1 3

External Ids for TRAV16 Gene

Previous GeneCards Identifiers for TRAV16 Gene

  • GC14U990304
  • GC14P020448
  • GC14P021529
  • GC14P021530
  • GC14P022459
  • GC14P022704
  • GC14P022819

Summaries for TRAV16 Gene

GeneCards Summary for TRAV16 Gene

TRAV16 (T Cell Receptor Alpha Variable 16) is a Protein Coding gene. An important paralog of this gene is TRAV8-7.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRAV16 Gene

Genomics for TRAV16 Gene

Products:

  1. Regulatory Element

Regulatory Elements for TRAV16 Gene

Enhancers for TRAV16 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around TRAV16 on UCSC Golden Path with GeneCards custom track

Promoters for TRAV16 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around TRAV16 on UCSC Golden Path with GeneCards custom track

Genomic Location for TRAV16 Gene

Chromosome:
14
Start:
21,990,496 bp from pter
End:
21,990,938 bp from pter
Size:
443 bases
Orientation:
Plus strand

Genomic View for TRAV16 Gene

Genes around TRAV16 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRAV16 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRAV16 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for TRAV16 Gene

Proteins for TRAV16 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

  • Protein details for TRAV16 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A0A6YYK6
    Recommended name:
    Protein TRAV16
    Protein Accession:
    A0A0A6YYK6

    Protein attributes for TRAV16 Gene

    Size:
    110 amino acids
    Molecular mass:
    12635 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TRAV16 Gene

Proteomics data for TRAV16 Gene at MOPED

Post-translational modifications for TRAV16 Gene

No Post-translational modifications

Other Protein References for TRAV16 Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for TRAV16 Gene

Domains & Families for TRAV16 Gene

Gene Families for TRAV16 Gene

HGNC:

Protein Domains for TRAV16 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRAV16: view

No data available for Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRAV16 Gene

Function for TRAV16 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRAV16 Gene

Localization for TRAV16 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TRAV16 Gene

Pathways & Interactions for TRAV16 Gene

SuperPathways for TRAV16 Gene

PathCards logoMore details on SuperPathways for TRAV16
No Data Available

Interacting Proteins for TRAV16 Gene

Gene Ontology (GO) - Biological Process for TRAV16 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRAV16 Gene

Drugs & Compounds for TRAV16 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for TRAV16 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for TRAV16 Gene

(1) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TRAV16 Gene

No ASD Table

Relevant External Links for TRAV16 Gene

GeneLoc Exon Structure for
TRAV16
ECgene alternative splicing isoforms for
TRAV16

Expression for TRAV16 Gene

Products:

  1. Primer

mRNA expression in normal human tissues for TRAV16 Gene

mRNA expression in normal human tissues for TRAV16 Gene
mRNA expression by GTEx for TRAV16 Gene

mRNA differential expression in normal tissues according to GTEx for TRAV16 Gene

This gene is overexpressed in Whole Blood (x26.4), Spleen (x4.7), and Small Intestine - Terminal Ileum (x4.4).
genes like me logo Genes that share expression patterns with TRAV16: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for TRAV16 Gene

Orthologs for TRAV16 Gene

This gene was present in the common ancestor of chordates.

Orthologs for TRAV16 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
 Mammalia TRAV16 36
  • 65 (a)
 OneToOne
oppossum
(Monodelphis domestica)
 Mammalia -- 36
  • 61 (a)
 OneToMany
-- 36
  • 63 (a)
 OneToMany
mouse
(Mus musculus)
 Mammalia Trav12d-1 36
  • 44 (a)
 ManyToMany
lizard
(Anolis carolinensis)
 Reptilia -- 36
  • 30 (a)
 ManyToMany
-- 36
  • 34 (a)
 ManyToMany
-- 36
  • 25 (a)
 ManyToMany
-- 36
  • 34 (a)
 ManyToMany
Species with no ortholog for TRAV16:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for TRAV16 Gene

ENSEMBL:
Gene Tree for TRAV16 (if available)
TreeFam:
Gene Tree for TRAV16 (if available)

Paralogs for TRAV16 Gene

Paralogs for TRAV16 Gene

genes like me logo Genes that share paralogs with TRAV16: view

Variants for TRAV16 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for TRAV16 Gene

Disorders for TRAV16 Gene

No disorders were found for TRAV16 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRAV16 Gene

Publications for TRAV16 Gene

  1. The human T-cell receptor TCRAC/TCRDC (C alpha/C delta) region: organization, sequence, and evolution of 97.6 kb of DNA. (PMID: 8188290) Koop B.F. … Hood L. (Genomics 1994) 2 3 67

Products for TRAV16 Gene

Sources for TRAV16 Gene

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