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Aliases for TRAV13-2 Gene

Aliases for TRAV13-2 Gene

  • T Cell Receptor Alpha Variable 13-2 2 3 5
  • TCRAV13S2 3
  • TCRAV8S2 3
  • TRAV132 3

External Ids for TRAV13-2 Gene

Previous GeneCards Identifiers for TRAV13-2 Gene

  • GC14U990307
  • GC14P020376
  • GC14P021456
  • GC14P022387

Summaries for TRAV13-2 Gene

Entrez Gene Summary for TRAV13-2 Gene

  • T cell receptors recognize foreign antigens which have been processed as small peptides and bound to major histocompatibility complex (MHC) molecules at the surface of antigen presenting cells (APC). Each T cell receptor is a dimer consisting of one alpha and one beta chain or one delta and one gamma chain. In a single cell, the T cell receptor loci are rearranged and expressed in the order delta, gamma, beta, and alpha. If both delta and gamma rearrangements produce functional chains, the cell expresses delta and gamma. If not, the cell proceeds to rearrange the beta and alpha loci. This region represents the germline organization of the T cell receptor alpha and delta loci. Both the alpha and delta loci include V (variable), J (joining), and C (constant) segments and the delta locus also includes diversity (D) segments. The delta locus is situated within the alpha locus, between the alpha V and J segments. During T cell development, the delta chain is synthesized by a recombination event at the DNA level joining a D segment with a J segment; a V segment is then joined to the D-J gene. The alpha chain is synthesized by recombination joining a single V segment with a J segment. For both chains, the C segment is later joined by splicing at the RNA level. Recombination of many different V segments with several J segments provides a wide range of antigen recognition. Additional diversity is attained by junctional diversity, resulting from the random additional of nucleotides by terminal deoxynucleotidyltransferase. Five variable segments can be used in either alpha or delta chains and are described by TRAV/DV symbols. Several V and J segments of the alpha locus are known to be incapable of encoding a protein and are considered pseudogenes. [provided by RefSeq, Aug 2016]

GeneCards Summary for TRAV13-2 Gene

TRAV13-2 (T Cell Receptor Alpha Variable 13-2) is a Protein Coding gene. An important paralog of this gene is TRAV13-1.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRAV13-2 Gene

Genomics for TRAV13-2 Gene

Regulatory Elements for TRAV13-2 Gene

Enhancers for TRAV13-2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH14F021917 1.4 Ensembl ENCODE 0.8 +0.5 517 2.8 ELF3 RAD21 RFX5 SCRT2 ZNF143 FOS RCOR1 THAP11 MIXL1 ZNF654 TRAV19 TRAV13-2 TRAV14DV4
GH14F021913 1.2 Ensembl ENCODE 0.8 -4.2 -4211 0.5 CTCF JUN ZNF644 RAD21 FOXK2 POLR2A ZNF143 SMC3 ZNF652 MIXL1 TRAV19 TRAV13-2 TRAV8-5
GH14F021915 0.9 ENCODE 0.8 -2.2 -2193 0.3 ELF3 PKNOX1 JUN ZNF644 YY1 POLR2A EED STAT1 MTA2 NR3C1 TRAV13-2 TRAV8-5
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around TRAV13-2 on UCSC Golden Path with GeneCards custom track

Promoters for TRAV13-2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001787730 12 401 CTCF ZNF654 RAD21 RFX5 CTBP1 GATA3 ZNF143 SMC3 FOSL2 FOS

Genomic Location for TRAV13-2 Gene

21,918,188 bp from pter
21,918,756 bp from pter
569 bases
Plus strand

Genomic View for TRAV13-2 Gene

Genes around TRAV13-2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRAV13-2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRAV13-2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRAV13-2 Gene

Proteins for TRAV13-2 Gene

  • Protein details for TRAV13-2 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    Recommended name:
    Protein TRAV13-2
    Protein Accession:

    Protein attributes for TRAV13-2 Gene

    113 amino acids
    Molecular mass:
    12716 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TRAV13-2 Gene

Post-translational modifications for TRAV13-2 Gene

No Post-translational modifications

Other Protein References for TRAV13-2 Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for TRAV13-2 Gene

Domains & Families for TRAV13-2 Gene

Gene Families for TRAV13-2 Gene

Protein Domains for TRAV13-2 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRAV13-2: view

No data available for Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRAV13-2 Gene

Function for TRAV13-2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRAV13-2 Gene

Localization for TRAV13-2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TRAV13-2 Gene

Pathways & Interactions for TRAV13-2 Gene

SuperPathways for TRAV13-2 Gene

No Data Available

Interacting Proteins for TRAV13-2 Gene

Gene Ontology (GO) - Biological Process for TRAV13-2 Gene


No data available for Pathways by source and SIGNOR curated interactions for TRAV13-2 Gene

Transcripts for TRAV13-2 Gene

mRNA/cDNA for TRAV13-2 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for TRAV13-2 Gene

No ASD Table

Relevant External Links for TRAV13-2 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for TRAV13-2 Gene

mRNA expression in normal human tissues for TRAV13-2 Gene

mRNA differential expression in normal tissues according to GTEx for TRAV13-2 Gene

This gene is overexpressed in Whole Blood (x27.6), Small Intestine - Terminal Ileum (x5.1), and Spleen (x4.4).

Protein differential expression in normal tissues from HIPED for TRAV13-2 Gene

This gene is overexpressed in Brain (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from MOPED for TRAV13-2 Gene

Protein tissue co-expression partners for TRAV13-2 Gene

genes like me logo Genes that share expression patterns with TRAV13-2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for TRAV13-2 Gene

Orthologs for TRAV13-2 Gene

This gene was present in the common ancestor of mammals.

Orthologs for TRAV13-2 Gene

Organism Taxonomy Gene Similarity Type Details
(Bos Taurus)
Mammalia -- 35
  • 60 (a)
-- 35
  • 53 (a)
(Mus musculus)
Mammalia Trav10d 35
  • 55 (a)
(Monodelphis domestica)
Mammalia -- 35
  • 40 (a)
-- 35
  • 39 (a)
(Ornithorhynchus anatinus)
Mammalia -- 35
  • 31 (a)
Species where no ortholog for TRAV13-2 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for TRAV13-2 Gene

Gene Tree for TRAV13-2 (if available)
Gene Tree for TRAV13-2 (if available)

Paralogs for TRAV13-2 Gene

Variants for TRAV13-2 Gene

Relevant External Links for TRAV13-2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRAV13-2 Gene

Disorders for TRAV13-2 Gene

No disorders were found for TRAV13-2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRAV13-2 Gene

Publications for TRAV13-2 Gene

  1. The human T-cell receptor TCRAC/TCRDC (C alpha/C delta) region: organization, sequence, and evolution of 97.6 kb of DNA. (PMID: 8188290) Koop B.F. … Hood L. (Genomics 1994) 2 3 64

Products for TRAV13-2 Gene

Sources for TRAV13-2 Gene

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