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Aliases for TRAV13-1 Gene

Aliases for TRAV13-1 Gene

  • T Cell Receptor Alpha Variable 13-1 2 3
  • T-Cell Receptor Alpha Variable 13-1 5
  • TCRAV13S1 3
  • TCRAV8S1 3
  • TRAV131 3

External Ids for TRAV13-1 Gene

Previous GeneCards Identifiers for TRAV13-1 Gene

  • GC14U990308
  • GC14P020327
  • GC14P021406
  • GC14P022338

Summaries for TRAV13-1 Gene

Entrez Gene Summary for TRAV13-1 Gene

  • T cell receptors recognize foreign antigens which have been processed as small peptides and bound to major histocompatibility complex (MHC) molecules at the surface of antigen presenting cells (APC). Each T cell receptor is a dimer consisting of one alpha and one beta chain or one delta and one gamma chain. In a single cell, the T cell receptor loci are rearranged and expressed in the order delta, gamma, beta, and alpha. If both delta and gamma rearrangements produce functional chains, the cell expresses delta and gamma. If not, the cell proceeds to rearrange the beta and alpha loci. This region represents the germline organization of the T cell receptor alpha and delta loci. Both the alpha and delta loci include V (variable), J (joining), and C (constant) segments and the delta locus also includes diversity (D) segments. The delta locus is situated within the alpha locus, between the alpha V and J segments. During T cell development, the delta chain is synthesized by a recombination event at the DNA level joining a D segment with a J segment; a V segment is then joined to the D-J gene. The alpha chain is synthesized by recombination joining a single V segment with a J segment. For both chains, the C segment is later joined by splicing at the RNA level. Recombination of many different V segments with several J segments provides a wide range of antigen recognition. Additional diversity is attained by junctional diversity, resulting from the random additional of nucleotides by terminal deoxynucleotidyltransferase. Five variable segments can be used in either alpha or delta chains and are described by TRAV/DV symbols. Several V and J segments of the alpha locus are known to be incapable of encoding a protein and are considered pseudogenes. [provided by RefSeq, Aug 2016]

GeneCards Summary for TRAV13-1 Gene

TRAV13-1 (T Cell Receptor Alpha Variable 13-1) is a Protein Coding gene. An important paralog of this gene is TRAV13-2.

Additional gene information for TRAV13-1 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRAV13-1 Gene

Genomics for TRAV13-1 Gene

GeneHancer (GH) Regulatory Elements for TRAV13-1 Gene

Promoters and enhancers for TRAV13-1 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14I021868 Enhancer 0.6 ENCODE 550.8 -0.3 -283 0.3 CTCF ZNF654 ZFP64 RAD21 SMC3 ZNF143 ZNF444 ZBTB20 TRAV13-1 TRAV8-3 TRA
GH14I021021 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE 6 -843.8 -843816 6.1 ZFP64 ZNF133 ARID4B SIN3A DMAP1 ZNF48 SLC30A9 SP3 RXRA SP5 ENSG00000258604 TPPP2 MIR6717 NDRG2 TRAV13-1 ENSG00000255472
GH14I022699 Enhancer 1.2 FANTOM5 ENCODE 5.3 +831.3 831280 1.7 ATF1 FOXA2 MLX ARID4B DMAP1 ZNF48 SLC30A9 ZNF766 GATA2 FOS OXA1L OR6E1P TRAV13-1 REM2 RPL26P2
GH14I021873 Enhancer 0.5 Ensembl ENCODE 0.4 +6.0 5970 3.1 CBX8 TRAV8-5 TRAV13-1 TRAV12-2 TRA
GH14I021860 Enhancer 0.4 ENCODE 0.4 -8.6 -8560 0.2 CTCF ZNF580 TRAV13-1 TRAV8-3 TRA
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TRAV13-1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TRAV13-1 Gene

Genomic Locations for TRAV13-1 Gene
527 bases
Plus strand

Genomic View for TRAV13-1 Gene

Genes around TRAV13-1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRAV13-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRAV13-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRAV13-1 Gene

Proteins for TRAV13-1 Gene

  • Protein details for TRAV13-1 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    Recommended name:
    T-cell receptor alpha variable 13-1
    Protein Accession:

    Protein attributes for TRAV13-1 Gene

    112 amino acids
    Molecular mass:
    12580 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TRAV13-1 Gene

Post-translational modifications for TRAV13-1 Gene

No Post-translational modifications

Other Protein References for TRAV13-1 Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for TRAV13-1 Gene

Domains & Families for TRAV13-1 Gene

Gene Families for TRAV13-1 Gene

Protein Domains for TRAV13-1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRAV13-1: view

No data available for Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRAV13-1 Gene

Function for TRAV13-1 Gene

Phenotypes From GWAS Catalog for TRAV13-1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRAV13-1 Gene

Localization for TRAV13-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRAV13-1 Gene

Pathways & Interactions for TRAV13-1 Gene

SuperPathways for TRAV13-1 Gene

No Data Available

Interacting Proteins for TRAV13-1 Gene

Gene Ontology (GO) - Biological Process for TRAV13-1 Gene


No data available for Pathways by source and SIGNOR curated interactions for TRAV13-1 Gene

Drugs & Compounds for TRAV13-1 Gene

No Compound Related Data Available

Transcripts for TRAV13-1 Gene

mRNA/cDNA for TRAV13-1 Gene

(6) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRAV13-1 Gene

No ASD Table

Relevant External Links for TRAV13-1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for TRAV13-1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TRAV13-1 Gene

mRNA differential expression in normal tissues according to GTEx for TRAV13-1 Gene

This gene is overexpressed in Whole Blood (x31.6), Spleen (x4.6), and Small Intestine - Terminal Ileum (x4.2).
genes like me logo Genes that share expression patterns with TRAV13-1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRAV13-1 Gene

Orthologs for TRAV13-1 Gene

This gene was present in the common ancestor of mammals.

Orthologs for TRAV13-1 Gene

Organism Taxonomy Gene Similarity Type Details
(Mus musculus)
Mammalia Trav10d 34
  • 67 (a)
(Bos Taurus)
Mammalia -- 34
  • 63 (a)
-- 34
  • 55 (a)
(Monodelphis domestica)
Mammalia -- 34
  • 40 (a)
-- 34
  • 35 (a)
(Ornithorhynchus anatinus)
Mammalia -- 34
  • 33 (a)
Species where no ortholog for TRAV13-1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for TRAV13-1 Gene

Gene Tree for TRAV13-1 (if available)
Gene Tree for TRAV13-1 (if available)

Paralogs for TRAV13-1 Gene

Paralogs for TRAV13-1 Gene Pseudogenes for TRAV13-1 Gene

genes like me logo Genes that share paralogs with TRAV13-1: view

Variants for TRAV13-1 Gene

Additional Variant Information for TRAV13-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRAV13-1 Gene

Disorders for TRAV13-1 Gene

No disorders were found for TRAV13-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRAV13-1 Gene

Publications for TRAV13-1 Gene

  1. The human T-cell receptor TCRAC/TCRDC (C alpha/C delta) region: organization, sequence, and evolution of 97.6 kb of DNA. (PMID: 8188290) Koop BF … Hood L (Genomics 1994) 2 3 58

Products for TRAV13-1 Gene

Sources for TRAV13-1 Gene

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