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Aliases for TRAV12-3 Gene

Aliases for TRAV12-3 Gene

  • T Cell Receptor Alpha Variable 12-3 2 3
  • TCRAV12S3 3
  • TCRAV2S2 3
  • TRAV123 3

External Ids for TRAV12-3 Gene

Summaries for TRAV12-3 Gene

GeneCards Summary for TRAV12-3 Gene

TRAV12-3 (T Cell Receptor Alpha Variable 12-3) is a Protein Coding gene. An important paralog of this gene is TRAV30.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRAV12-3 Gene

Genomics for TRAV12-3 Gene

Genomic Location for TRAV12-3 Gene

Start:
21,965,451 bp from pter
End:
21,966,061 bp from pter
Size:
611 bases
Orientation:
Plus strand

Genomic View for TRAV12-3 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TRAV12-3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRAV12-3 Gene

No data available for Regulatory Elements for TRAV12-3 Gene

Proteins for TRAV12-3 Gene

  • Protein details for TRAV12-3 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A0B4J271-A0A0B4J271
    Recommended name:
    Protein TRAV12-3
    Protein Accession:
    A0A0B4J271
    Secondary Accessions:

    Protein attributes for TRAV12-3 Gene

    Size:
    114 amino acids
    Molecular mass:
    13173 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TRAV12-3 Gene

Proteomics data for TRAV12-3 Gene at MOPED

Post-translational modifications for TRAV12-3 Gene

No Post-translational modifications

Other Protein References for TRAV12-3 Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for TRAV12-3 Gene

Domains for TRAV12-3 Gene

Gene Families for TRAV12-3 Gene

HGNC:
  • TRAS :T cell receptors / TRA locus

Protein Domains for TRAV12-3 Gene

genes like me logo Genes that share domains with TRAV12-3: view

No data available for UniProtKB/Swiss-Prot for TRAV12-3 Gene

Function for TRAV12-3 Gene

Gene Ontology (GO) - Molecular Function for TRAV12-3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding --
genes like me logo Genes that share ontologies with TRAV12-3: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for TRAV12-3 Gene

Localization for TRAV12-3 Gene

No data available for Gene Ontology (GO) - Cellular Components for TRAV12-3 Gene

Pathways for TRAV12-3 Gene

SuperPathways for TRAV12-3 Gene

No Data Available

Interacting Proteins for TRAV12-3 Gene

Gene Ontology (GO) - Biological Process for TRAV12-3 Gene

None

No data available for Pathways by source for TRAV12-3 Gene

Transcripts for TRAV12-3 Gene

mRNA/cDNA for TRAV12-3 Gene

(5) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TRAV12-3 Gene

No ASD Table

Relevant External Links for TRAV12-3 Gene

GeneLoc Exon Structure for
TRAV12-3
ECgene alternative splicing isoforms for
TRAV12-3

Expression for TRAV12-3 Gene

mRNA expression in normal human tissues for TRAV12-3 Gene

mRNA differential expression in normal tissues according to GTEx for TRAV12-3 Gene

This gene is overexpressed in Whole Blood (32.6) and Spleen (4.4).
genes like me logo Genes that share expressions with TRAV12-3: view

Orthologs for TRAV12-3 Gene

This gene was present in the common ancestor of mammals.

Orthologs for TRAV12-3 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia -- 37
  • 50 (a)
ManyToMany
-- 37
  • 68 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia -- 37
  • 59 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Trav7-2 37
  • 61 (a)
ManyToMany
Trav7-3 37
  • 66 (a)
ManyToMany
Trav7-4 16
Trav7-4 37
  • 63 (a)
ManyToMany
Trav7-6 37
  • 57 (a)
ManyToMany
Trav7d-3 37
  • 66 (a)
ManyToMany
Trav7d-4 37
  • 64 (a)
ManyToMany
Trav7d-5 37
  • 57 (a)
ManyToMany
Trav7n-6 37
  • 49 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 37
  • 40 (a)
OneToMany
Species with no ortholog for TRAV12-3:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for TRAV12-3 Gene

ENSEMBL:
Gene Tree for TRAV12-3 (if available)
TreeFam:
Gene Tree for TRAV12-3 (if available)

Paralogs for TRAV12-3 Gene

genes like me logo Genes that share paralogs with TRAV12-3: view

Variants for TRAV12-3 Gene

Relevant External Links for TRAV12-3 Gene

HapMap Linkage Disequilibrium report
TRAV12-3

No data available for Sequence variations from dbSNP and Humsavar and Structural Variations from Database of Genomic Variants (DGV) for TRAV12-3 Gene

Disorders for TRAV12-3 Gene

No disorders were found for TRAV12-3 Gene.

No data available for UniProtKB/Swiss-Prot for TRAV12-3 Gene

Publications for TRAV12-3 Gene

  1. Promoter and enhancer elements in the rearranged alpha chain gene of the human T cell receptor. (PMID: 3501368) Luria S. … Givol D. (EMBO J. 1987) 2 3
  2. Sequence and evolution of the human germline V lambda repertoire. (PMID: 8951372) Williams S.C. … Winter G. (J. Mol. Biol. 1996) 2 3

Products for TRAV12-3 Gene

Sources for TRAV12-3 Gene

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