Free for academic non-profit institutions. Other users need a Commercial license

Aliases for TRAPPC2P2 Gene

Aliases for TRAPPC2P2 Gene

  • Trafficking Protein Particle Complex 2 Pseudogene 2 2 3 5
  • Spondyloepiphyseal Dysplasia, Late, Pseudogene 2 2 3
  • SEDLP2 3

External Ids for TRAPPC2P2 Gene

Previous HGNC Symbols for TRAPPC2P2 Gene

  • SEDLP2

Previous GeneCards Identifiers for TRAPPC2P2 Gene

  • GC08M072524
  • GC08M072360
  • GC08M067854

Summaries for TRAPPC2P2 Gene

GeneCards Summary for TRAPPC2P2 Gene

TRAPPC2P2 (Trafficking Protein Particle Complex 2 Pseudogene 2) is a Pseudogene. Diseases associated with TRAPPC2P2 include Spondyloepiphyseal Dysplasia Tarda.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRAPPC2P2 Gene

Genomics for TRAPPC2P2 Gene

Regulatory Elements for TRAPPC2P2 Gene

Enhancers for TRAPPC2P2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08F071354 1.2 Ensembl ENCODE 16.3 +93.1 93054 2.8 PKNOX1 SIN3A FEZF1 ZNF2 ZNF121 KLF7 ZNF263 SP3 REST TSHZ1 TRAPPC2P2 ENSG00000253287 RPL13P11 GC08M071444 GC08M071253
GH08F071840 0.8 FANTOM5 ENCODE 16.2 -394.2 -394208 6.4 HDGF PKNOX1 WRNIP1 SIN3A ZNF2 GLIS2 ZNF143 ZNF207 KLF7 ZNF263 ENSG00000253287 TRAPPC2P2 LOC101926908 MSC MSC-AS1
GH08F071520 0.4 ENCODE 0.2 -71.4 -71401 0.2 OSR2 FEZF1 KLF8 ZNF18 ZXDB EYA1 LOC102724772 TRAPPC2P2
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around TRAPPC2P2 on UCSC Golden Path with GeneCards custom track

Genomic Location for TRAPPC2P2 Gene

Chromosome:
8
Start:
71,448,711 bp from pter
End:
71,449,240 bp from pter
Size:
530 bases
Orientation:
Minus strand

Genomic View for TRAPPC2P2 Gene

Genes around TRAPPC2P2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRAPPC2P2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRAPPC2P2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRAPPC2P2 Gene

Proteins for TRAPPC2P2 Gene

Post-translational modifications for TRAPPC2P2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRAPPC2P2 Gene

Domains & Families for TRAPPC2P2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRAPPC2P2 Gene

Function for TRAPPC2P2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRAPPC2P2 Gene

Localization for TRAPPC2P2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TRAPPC2P2 Gene

Pathways & Interactions for TRAPPC2P2 Gene

SuperPathways for TRAPPC2P2 Gene

No Data Available

Interacting Proteins for TRAPPC2P2 Gene

Gene Ontology (GO) - Biological Process for TRAPPC2P2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRAPPC2P2 Gene

Transcripts for TRAPPC2P2 Gene

mRNA/cDNA for TRAPPC2P2 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TRAPPC2P2 Gene

No ASD Table

Relevant External Links for TRAPPC2P2 Gene

GeneLoc Exon Structure for
TRAPPC2P2
ECgene alternative splicing isoforms for
TRAPPC2P2

Expression for TRAPPC2P2 Gene

mRNA expression in normal human tissues for TRAPPC2P2 Gene

mRNA differential expression in normal tissues according to GTEx for TRAPPC2P2 Gene

This gene is overexpressed in Testis (x44.6) and Pituitary (x8.4).

NURSA nuclear receptor signaling pathways regulating expression of TRAPPC2P2 Gene:

TRAPPC2P2
genes like me logo Genes that share expression patterns with TRAPPC2P2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for TRAPPC2P2 Gene

Orthologs for TRAPPC2P2 Gene

Evolution for TRAPPC2P2 Gene

ENSEMBL:
Gene Tree for TRAPPC2P2 (if available)
TreeFam:
Gene Tree for TRAPPC2P2 (if available)

No data available for Orthologs for TRAPPC2P2 Gene

Paralogs for TRAPPC2P2 Gene

No data available for Paralogs for TRAPPC2P2 Gene

Variants for TRAPPC2P2 Gene

Relevant External Links for TRAPPC2P2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRAPPC2P2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRAPPC2P2 Gene

Disorders for TRAPPC2P2 Gene

MalaCards: The human disease database

(1) MalaCards diseases for TRAPPC2P2 Gene - From: GeneCards

Disorder Aliases PubMed IDs
spondyloepiphyseal dysplasia tarda
  • x-linked spondyloepiphyseal dysplasia tarda
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for TRAPPC2P2

Genetic Association Database (GAD)
TRAPPC2P2
genes like me logo Genes that share disorders with TRAPPC2P2: view

No data available for UniProtKB/Swiss-Prot and Genatlas for TRAPPC2P2 Gene

Publications for TRAPPC2P2 Gene

  1. Gene structure and expression study of the SEDL gene for spondyloepiphyseal dysplasia tarda. (PMID: 11031107) Gecz J. … Mulley J.C. (Genomics 2000) 2 3 64
  2. Genome-wide association of echocardiographic dimensions, brachial artery endothelial function and treadmill exercise responses in the Framingham Heart Study. (PMID: 17903301) Vasan R.S. … Benjamin E.J. (BMC Med. Genet. 2007) 46 64
  3. Framingham Heart Study 100K Project: genome-wide associations for blood pressure and arterial stiffness. (PMID: 17903302) Levy D. … Mitchell G.F. (BMC Med. Genet. 2007) 46 64

Products for TRAPPC2P2 Gene

Sources for TRAPPC2P2 Gene

Content
Loading form....